LOC120560261


Basic Information

Item Value
gene id LOC120560261
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28881031 ~ 28890870 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802534.1
ctacagctagctagctgctactGCTAGCAAACATTGCTTTAGCCTGCATAGCCAACACACTCTTCCGGTAGGTATACACATGTAACAGCGTTGTAATAGTTTGACAACACATGGAAGATTGAGTGAAAATGCGAAGATGTGACTGCATATAGGAAAACCTGAAGATGGACAAGGAGAGCAAACTGTCCTCTGCTGTTCAGTCTTTTGACTATAAAcaacagaggagacagagaaaggagCCTGCTGAGCCACACACAGCCTCATCACCAAGTCTGATGTTACCAAATCCTTATGTGTCCGAGCAGAGTTTTAGAGGGAACCGGTCGCCAGGTCTGACCACAAAGCAGAATCCATCAAATACATATGAAGTGCCAGCAGGAAAAGGAGATGTGTCAAGGAGTCGTGGCTACAGCAGCAGTCGTTGTGTTAGAGACACcagtgatgatttcctgcagagagacagatccACATGGGATCCACAAGCAAagACATCAAAAGGCAACAATGGCTCTCTTGCCAAAGGCAGGGTTATGGGCAAGAGCTCGCTGGATGCACAGAAAAAAGGTTTTAGAGGTGCCAGATCTGCGCCGGACTCTGCAGGGAAGCCAAAACCAGCACAGACCGACTTGGTCCCATTTGAAGTAAAGATGACTGATTTCCCAGAGTTAGCTGGTGGTTCGCTGGGAAAACCGGGCTCTCCTCATGTTCAGAGAGAGTGCTGGGGTCCGACTCAAACGCAAACATCGGCATCTTCCTGGAAGtCTGTCAGAAGAATATCCCAAACACAGCCTGACCCCCAGCAAATTACCACTACTGCTAAGCCAGATTCCTCTGCTGCTTCACCAGGTCAGCTGGTGGGGACTTCCTGGGCTAATGTTGCCTCTCAGCCTCCAAAGAAACCTGTCCCTAAAGAAAGAACAATCCGCAGCAATCACATGCAGATGGAGGAAATGGCTGCACATCAGGAAGAGGGAACTCCAGGGAAGAAAAAacggaagaaaaagaagaagaaagctaAAGGTGAAGATGCAGAAGCTGAGTCAGAAGAGCCAGTAATGTATCAGGAGCCTCCAAAATTTGAGGATGAAGAGGAGTTTCCAGGCTTGACTCCTGCTCTGACTAGGACTGATAGATTAATAACAAGCAGCTATGCAGCCACACTATGCAATGAGGTACATATCgaaaaccAAAGAGCGCATCAGTCTACCAACCAAACCAAAGAAAAATCACCCGCAGCAAAAACTCAGCCCACAGAGACGGCTAAGAAAGGACAGAAATCTGAAAAGGTGTCTGGGAAGAAAAGCCAAGTTCCTGTTAAACTGGACATCGGAAACATGTTGGCGGTCCTAGAAAAGAAGCAATCTCAAAAAGCCAAGCAGGACGCCAAACCAGTCATTCTCTCAGttGGTGGAGGACTACCTGTTGTCCAGAAGCAAGCTTTATTTCAGAAGAAGCTGTCCAGGCAGCAGGATAAAATTGCACACAATCCCCTGGACTCCACCAGCCCTTTGGTGAAGAAAGGCAAGCAGAGAGAGGTGCCCAAAGCCAAGAAACCCACTCCTCTCAAGAAGGTCATTTTGAAagaaagggaggagaggaaacaaagaCGTTTgctggaggagagaggactgcTGCCCGAAAATGACTTCCAACCTGCTAATGATgctgcagaagaagaagagcagtGTGACACAAATGCCACAGATGAGGTTGGGAGTCCTTCAGAAGAGCTCGATGGTCCGTCAGAGTTTAACGGGACAAACCAGATGGTGAAAGAGGGGGATGAAGAGGCCGACAAAGATGAGAACGTAGAGCAACAAACCACCTCACCTGTGCCCTGTACAGCCAGTCGACCCAAAATCCACAGCAGAAAGTTCCGAGACTATTGCAGCCAGATGCTGAGCAAAGACGTGGATGAGTGTGTGACGGATCTGCTGAAGGAGCTGGTTCGTTTCCAGGACCGCTTGTACCAGAAGGACCCCATGAAGGCCCGTATGAAAAGACGCATTGTGATGGGGCTCAGAGAGGTCCTGAAGCACCTCAAACTCAGGAAGGTCAAGTGTGTTGTCTTCTCACCCAACTGTGAACGCATCCAGTCCAAAGGAGGCCTGGATGAGGCTCTTTACACCATCATTGACACTTGTCGTGAACAGGGGGTGCCATTCGTGTTTGCCCTATCCAGGAAAGCTTTGGGTCGCTGCGTCAACAAGGCAGTGCCTGTCAGCCTGGTGGGCATCTTCAACTATGACGGTGCACAGGACATCTATCACAAGATGATCGAGTTGTCGTCTGAGGCCAGGAAAGCCTATGAGGTGATGGTGTCGAGCCTGGAGCAGACAGGCCAGGTGGAGGCAGAGGCAGAGGAGTCCGTGGACATTGAGGAAGAGCTGCACATCAGCAGCCTGGCTGAGGAGGCTGAGCCCGGTCCTGACGCCACACAGCCAGAGGAACCAGAGTACATAAAAATTTGGAAGAACATGTTGGAGAAGGATTGCAACCACACATTTCTGAACTTTGAGAAGCAGCTGAGCTCCCTGCGCTTGGATAGTGTATGCACTGAAAACACTGATGAAGATGAGAAGAGTTGACAGTGGCAAACCCCTCTGTGCCTACACAAAATGACTCACTCAACAAAAAAATGCCCCACTCATTCTGATCACCAGCTTAGAAGAAACTAAGATGGACTTAATCCCACATGCAGAAAAAGAGCAATGCAAGCTGTTTGCTGCAGTGGTTCTCCACCTGAGGATTTTGTCAGGAAATTAATCATGTTGCTAGTTTGCAATGAATTATGAATTCCTTTATTTTCTATTTGGAAAGCTAAAGTAATATGTGTTTTTTGAGTTCAAGATAAAGTGTGTGTTGGTGATAAAACTGTAGAGGTGTAATCACTGACTTATTAGGACCAAACCACTCACTTAAAGAAATCCCACAATATGAA
>XM_039802535.1
tacagctagctagctgctactGCTAGCAAACATTGCTTTAGCCTGCATAGCCAACACACTCTTCCGGTAGGTATACACATGTAACAGCGTTGTAATAGTTTGACAACACATGGAAGATTGAGTGAAAATGCGAAGATGTGACTGCATATAGGAAAACCTGAAGATGGACAAGGAGAGCAAACTGTCCTCTGCTGTTCAGTCTTTTGACTATAAAcaacagaggagacagagaaaggagCCTGCTGAGCCACACACAGCCTCATCACCAAGTCTGATGTTACCAAATCCTTATGTGTCCGAGCAGAGTTTTAGAGGGAACCGGTCGCCAGGTCTGACCACAAAGCAGAATCCATCAAATACATATGAAGTGCCAGCAGGAAAAGGAGATGTGTCAAGGAGTCGTGGCTACAGCAGCAGTCGTTGTGTTAGAGACACcagtgatgatttcctgcagagagacagatccACATGGGATCCACAAGCAAagACATCAAAAGGCAACAATGGCTCTCTTGCCAAAGGCAGGGTTATGGGCAAGAGCTCGCTGGATGCACAGAAAAAAGGTTTTAGAGGTGCCAGATCTGCGCCGGACTCTGCAGGGAAGCCAAAACCAGCACAGACCGACTTGGTCCCATTTGAAGTAAAGATGACTGATTTCCCAGAGTTAGCTGGTGGTTCGCTGGGAAAACCGGGCTCTCCTCATGTTCAGAGAGAGTGCTGGGGTCCGACTCAAACGCAAACATCGGCATCTTCCTGGAAGtCTGTCAGAAGAATATCCCAAACACAGCCTGACCCCCAGCAAATTACCACTACTGCTAAGCCAGATTCCTCTGCTGCTTCACCAGGTCAGCTGGTGGGGACTTCCTGGGCTAATGTTGCCTCTCAGCCTCCAAAGAAACCTGTCCCTAAAGAAAGAACAATCCGCAGCAATCACATGCAGATGGAGGAAATGGCTGCACATCAGGAAGAGGGAACTCCAGGGAAGAAAAAacggaagaaaaagaagaagaaagctaAAGGTGAAGATGCAGAAGCTGAGTCAGAAGAGCCAGTAATGTATCAGGAGCCTCCAAAATTTGAGGATGAAGAGGAGTTTCCAGGCTTGACTCCTGCTCTGACTAGGACTGATAGATTAATAACAAGCAGCTATGCAGCCACACTATGCAATGAGgaaaaccAAAGAGCGCATCAGTCTACCAACCAAACCAAAGAAAAATCACCCGCAGCAAAAACTCAGCCCACAGAGACGGCTAAGAAAGGACAGAAATCTGAAAAGGTGTCTGGGAAGAAAAGCCAAGTTCCTGTTAAACTGGACATCGGAAACATGTTGGCGGTCCTAGAAAAGAAGCAATCTCAAAAAGCCAAGCAGGACGCCAAACCAGTCATTCTCTCAGttGGTGGAGGACTACCTGTTGTCCAGAAGCAAGCTTTATTTCAGAAGAAGCTGTCCAGGCAGCAGGATAAAATTGCACACAATCCCCTGGACTCCACCAGCCCTTTGGTGAAGAAAGGCAAGCAGAGAGAGGTGCCCAAAGCCAAGAAACCCACTCCTCTCAAGAAGGTCATTTTGAAagaaagggaggagaggaaacaaagaCGTTTgctggaggagagaggactgcTGCCCGAAAATGACTTCCAACCTGCTAATGATgctgcagaagaagaagagcagtGTGACACAAATGCCACAGATGAGGTTGGGAGTCCTTCAGAAGAGCTCGATGGTCCGTCAGAGTTTAACGGGACAAACCAGATGGTGAAAGAGGGGGATGAAGAGGCCGACAAAGATGAGAACGTAGAGCAACAAACCACCTCACCTGTGCCCTGTACAGCCAGTCGACCCAAAATCCACAGCAGAAAGTTCCGAGACTATTGCAGCCAGATGCTGAGCAAAGACGTGGATGAGTGTGTGACGGATCTGCTGAAGGAGCTGGTTCGTTTCCAGGACCGCTTGTACCAGAAGGACCCCATGAAGGCCCGTATGAAAAGACGCATTGTGATGGGGCTCAGAGAGGTCCTGAAGCACCTCAAACTCAGGAAGGTCAAGTGTGTTGTCTTCTCACCCAACTGTGAACGCATCCAGTCCAAAGGAGGCCTGGATGAGGCTCTTTACACCATCATTGACACTTGTCGTGAACAGGGGGTGCCATTCGTGTTTGCCCTATCCAGGAAAGCTTTGGGTCGCTGCGTCAACAAGGCAGTGCCTGTCAGCCTGGTGGGCATCTTCAACTATGACGGTGCACAGGACATCTATCACAAGATGATCGAGTTGTCGTCTGAGGCCAGGAAAGCCTATGAGGTGATGGTGTCGAGCCTGGAGCAGACAGGCCAGGTGGAGGCAGAGGCAGAGGAGTCCGTGGACATTGAGGAAGAGCTGCACATCAGCAGCCTGGCTGAGGAGGCTGAGCCCGGTCCTGACGCCACACAGCCAGAGGAACCAGAGTACATAAAAATTTGGAAGAACATGTTGGAGAAGGATTGCAACCACACATTTCTGAACTTTGAGAAGCAGCTGAGCTCCCTGCGCTTGGATAGTGTATGCACTGAAAACACTGATGAAGATGAGAAGAGTTGACAGTGGCAAACCCCTCTGTGCCTACACAAAATGACTCACTCAACAAAAAAATGCCCCACTCATTCTGATCACCAGCTTAGAAGAAACTAAGATGGACTTAATCCCACATGCAGAAAAAGAGCAATGCAAGCTGTTTGCTGCAGTGGTTCTCCACCTGAGGATTTTGTCAGGAAATTAATCATGTTGCTAGTTTGCAATGAATTATGAATTCCTTTATTTTCTATTTGGAAAGCTAAAGTAATATGTGTTTTTTGAGTTCAAGATAAAGTGTGTGTTGGTGATAAAACTGTAGAGGTGTAATCACTGACTTATTAGGACCAAACCACTCACTTAAAGAAATCCCACAATATGAA

Function

GO: NA

KEGG:

id description
K19539 SECISBP2, SBP2; selenocysteine insertion sequence-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802534.1 True 2941 mRNA 0.48 18 28881031 28890870
XM_039802535.1 False 2931 mRNA 0.48 18 28881032 28890870

Neighbor

gene id symbol gene type direction distance location
mfsd10 mfsd10 coding upstream 1032 28873642 ~ 28879999 (+)
LOC120560259 NA coding upstream 7682 28860511 ~ 28873349 (+)
zgc:114041 NA coding upstream 68035 28807353 ~ 28812996 (+)
jak2b LOC103366422 coding upstream 80349 28774899 ~ 28800682 (+)
si:dkey-215k6.1 LOC103358522,LOC102778795,LOC102301725 coding upstream 458988 28117914 ~ 28422043 (+)
malt1 LOC102297700,LOC100707481,LOC102194418,LOC101473126,LOC102781556 coding downstream 11886 28902756 ~ 28916610 (+)
emb NA coding downstream 27136 28918006 ~ 28927848 (+)
hint2 hint2,LOC102195764,LOC100691034,LOC101473821 coding downstream 44096 28934966 ~ 28938642 (+)
LOC120561296 LOC104963268,LOC101073255 coding downstream 49672 28940542 ~ 28955828 (+)
LOC120560307 LOC103366435,LOC100706955,LOC101475748 coding downstream 72543 28963413 ~ 28979486 (+)
G65418 NA non-coding upstream 64631 28816185 ~ 28816400 (+)
G65417 NA non-coding upstream 65555 28815254 ~ 28815476 (+)
G65396 NA non-coding upstream 114806 28766020 ~ 28766225 (+)
G65394 NA non-coding upstream 124838 28755865 ~ 28756193 (+)
G65385 NA non-coding upstream 259732 28621085 ~ 28621299 (+)
G65473 NA non-coding downstream 94743 28985613 ~ 29002180 (+)
LOC120560778 NA non-coding downstream 182071 29072941 ~ 29131216 (+)
G65565 LOC108233773,LOC103375797 non-coding downstream 187556 29078426 ~ 29098313 (+)
G65570 NA non-coding downstream 213118 29103988 ~ 29105609 (+)
G65710 NA non-coding downstream 656579 29547449 ~ 29614880 (+)
mboat4 NA other upstream 31560 28845626 ~ 28849471 (+)
G65084 lipg other upstream 1510072 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 1841432 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 2219136 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 2236864 26614237 ~ 26644167 (+)
ubac1 ubac1 other downstream 453710 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 1295978 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 1356017 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 1683216 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 1966710 30857580 ~ 30893280 (+)

Expression


Co-expression Network