hnf1a (hnf1a)


Basic Information

Item Value
gene id hnf1a
gene name hnf1a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14392607 ~ 14399967 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802545.1
TTTGAAAGCAAAACAGCAGGTGGAGAGCTAAAACCAGGCGGCTCCGGACCCATCGGGAGGATATTCAACACAGGGAAAATGGAAGTATTTGCTCTTTTAAGCTGAAGAGGGACCACAAATATGAGGCCCAACGCTGCCTGTCTGGCTGTCATTTGAGTGCGGTGGCGCACACGAGAGCAGTGTTTGTTTGCGAGGCGGTAGCGAGGTAAGCCTTCAGAGCAATGGAAGACAGGGCAGAGGAGAAGCCCGGGGCAGCTATGGCGAGGCCGAGCAGTTTGACTGCCCTTCAGGAGCAGCTGATCTGGGCCCTGCTGGGATCTGGACTGTCCCGGGACATCCTGGTCCAAGCCATGGGGGAACTGGAGCGAGACAGGGCGAATGCTGGCGccgagagaagagagaggggggacggAGAGAGCTCCGAGGAGGGAGAAATGGATTTCCCACCGCCTATATTCCGAGAGCTGGAGAAGCTTCACCCGGAGGAGGCGGCCAAACTGAGGGCCGAAGTTGACCAGCTACTGCAGGAGGACCCCTGGCACGTTGCTAAAATGGTGAAAAGCTACATGCAGCAGCACAACCTCCCTCAGAGAGAGGTGGTGGAGTCCACCGGACTCAACCAGTCCCATCTCTCCCAGCACCTCAACAAAGGCACGCCCATGAAGAACCAGAAGAGAGCGTCTCTGTACACCTGGTACGTCAAGAAGCGAGGCGAGATCAGCCAGCAATTTACCAACGCCAAACATGGCCTTGGCTCTGCGGAGGAGCAAGGAGAGGAGTCTAAGAAAGGACGGAGGAACAGGTTCAAATGGGGTCCAGCGTCCCTGCAGATCCTTTTCCACGCCTACGAACGACAGAAGAACCCTagcaaggaggagagagaggggttaGTGGAGGATTGTAACAGGGCAGAGTGTCATCAGAGGGGGGTGTCCCCCTCCCAGCTTGCTGGCCTGGGCTCCAACCTGGTTACCGAGGTCCGCGTGTACAACTGGTTCGCCAACCGCCGCAAAGAGGAGGCTTTCCGTCACAAACTGGCTCTCGACACACCTTTTACCAACCAGTCTGCCTCCTCTTCTCACCCCAACCTCCCACCGAGCCCTGAGCATGTGTATTGGGGCCTGACTTCTTGTTTTCCAGGGGTGAAATACAGCCAGCAGATCCTGTGCGAAAGCGTGAGCTCAGCCAGAGGAAGCGCAGGAGAGAGAGTGGGACGTCTGGTGGTCAGCCCCATTCAGCTGGAGCCCAGCCACACACTCCTCGAGACACAGAACCACAAGCTGGTGTCCAGCGGTGGCCCACTGCCCCCAGTAAGCACTCTGACCTCGCTGCACAGTCTGTCTGCGTCCCCCACCTCCTCCCAGGGCCTCATCATGGCCTCCCTGCCCAGCGTCATGAGCCTGGGGGAGTCCTCACTTCTCATCGGTTTAGCCTCCACGCAGTCTCAGACCGTGCCTGTTATCAACAATGTCGGGGGCGGTTTCACCACTCTCCAGCCAATCTCATTCCAGCAGCAGCTTCACGGCTCTCCCCAGCAGCCGTTATCACACCATCTCCAGAGTCACATGGGTGCCAGTCCCTTCATGGCGACCATGGCGCAGCTGCCATGTCACATGTACAACAAGTTTGATTCGCCCCAGTACCATTCGTCCAGTCTGCTGTCTCAAGCCATGGTCATCGCTGACAGCGGCAGCCTGGGGACGCTGACCAGCCTCACTGCTGTCAGACAGAATCTAACAGCAGATCCTGAGGAACAGACGGATCGAGCCCTACAAGAAGACTCTCTCCACCTGCAGCCGCACACACCTGTGCCAGcTTCCTCCGAGAGCCTAGAGCTGTATCCTGCTTCTCAGGCCACAGAAAGTCAACAGTCTCACCTGCTCTCACCTTCGCCAACAGACATGAGCTCTTACATCCCTACACAAATGGTCTCTACTGCACAGTAGAACTGCTCTGGCACAATCAGCTGGACTCAGGGGGTTTTGGATGGACAGCTACCTCTGGTCTAAGTTTCCAGAAGATACCTGGAGTCAGGGGCCACAGGGTCGATTCAGCTTTGATGCTTCAAAGACTCTCGGAAACTCTGTACCACTGTAACACGAACAACATTAGAGGAGATTCACTTTTGATAAAACAATCCATGTGAAAAATCAACACCGGCatgtatttttataaaaatgtttagTATGATCCTGAGATTGTATATTAAGTTGAAACTTGTAAACCGCATGTTGCATGCATTTTTTTATGTCACTGCCTTGAAATGCCTTTCTTAATGACAAAGTAAAGACT
>XM_039802546.1
TTTGAAAGCAAAACAGCAGGTGGAGAGCTAAAACCAGGCGGCTCCGGACCCATCGGGAGGATATTCAACACAGGGAAAATGGAAGTATTTGCTCTTTTAAGCTGAAGAGGGACCACAAATATGAGGCCCAACGCTGCCTGTCTGGCTGTCATTTGAGTGCGGTGGCGCACACGAGAGCAGTGTTTGTTTGCGAGGCGGTAGCGAGGTAAGCCTTCAGAGCAATGGAAGACAGGGCAGAGGAGAAGCCCGGGGCAGCTATGGCGAGGCCGAGCAGTTTGACTGCCCTTCAGGAGCAGCTGATCTGGGCCCTGCTGGGATCTGGACTGTCCCGGGACATCCTGGTCCAAGCCATGGGGGAACTGGAGCGAGACAGGGCGAATGCTGGCGccgagagaagagagaggggggacggAGAGAGCTCCGAGGAGGGAGAAATGGATTTCCCACCGCCTATATTCCGAGAGCTGGAGAAGCTTCACCCGGAGGAGGCGGCCAAACTGAGGGCCGAAGTTGACCAGCTACTGCAGGAGGACCCCTGGCACGTTGCTAAAATGGTGAAAAGCTACATGCAGCAGCACAACCTCCCTCAGAGAGAGGTGGTGGAGTCCACCGGACTCAACCAGTCCCATCTCTCCCAGCACCTCAACAAAGGCACGCCCATGAAGAACCAGAAGAGAGCGTCTCTGTACACCTGGTACGTCAAGAAGCGAGGCGAGATCAGCCAGCAATTTACCAACGCCAAACATGGCCTTGGCTCTGCGGAGGAGCAAGGAGAGGAGTCTAAGAAAGGACGGAGGAACAGGTTCAAATGGGGTCCAGCGTCCCTGCAGATCCTTTTCCACGCCTACGAACGACAGAAGAACCCTagcaaggaggagagagaggggttaGTGGAGGATTGTAACAGGGCAGAGTGTCATCAGAGGGGGGTGTCCCCCTCCCAGCTTGCTGGCCTGGGCTCCAACCTGGTTACCGAGGTCCGCGTGTACAACTGGTTCGCCAACCGCCGCAAAGAGGAGGCTTTCCGTCACAAACTGGCTCTCGACACACCTTTTACCAACCAGTCTGCCTCCTCTTCTCACCCCAACCTCCCACCGAGCCCTGAGCATGGGGTGAAATACAGCCAGCAGATCCTGTGCGAAAGCGTGAGCTCAGCCAGAGGAAGCGCAGGAGAGAGAGTGGGACGTCTGGTGGTCAGCCCCATTCAGCTGGAGCCCAGCCACACACTCCTCGAGACACAGAACCACAAGCTGGTGTCCAGCGGTGGCCCACTGCCCCCAGTAAGCACTCTGACCTCGCTGCACAGTCTGTCTGCGTCCCCCACCTCCTCCCAGGGCCTCATCATGGCCTCCCTGCCCAGCGTCATGAGCCTGGGGGAGTCCTCACTTCTCATCGGTTTAGCCTCCACGCAGTCTCAGACCGTGCCTGTTATCAACAATGTCGGGGGCGGTTTCACCACTCTCCAGCCAATCTCATTCCAGCAGCAGCTTCACGGCTCTCCCCAGCAGCCGTTATCACACCATCTCCAGAGTCACATGGGTGCCAGTCCCTTCATGGCGACCATGGCGCAGCTGCCATGTCACATGTACAACAAGTTTGATTCGCCCCAGTACCATTCGTCCAGTCTGCTGTCTCAAGCCATGGTCATCGCTGACAGCGGCAGCCTGGGGACGCTGACCAGCCTCACTGCTGTCAGACAGAATCTAACAGCAGATCCTGAGGAACAGACGGATCGAGCCCTACAAGAAGACTCTCTCCACCTGCAGCCGCACACACCTGTGCCAGcTTCCTCCGAGAGCCTAGAGCTGTATCCTGCTTCTCAGGCCACAGAAAGTCAACAGTCTCACCTGCTCTCACCTTCGCCAACAGACATGAGCTCTTACATCCCTACACAAATGGTCTCTACTGCACAGTAGAACTGCTCTGGCACAATCAGCTGGACTCAGGGGGTTTTGGATGGACAGCTACCTCTGGTCTAAGTTTCCAGAAGATACCTGGAGTCAGGGGCCACAGGGTCGATTCAGCTTTGATGCTTCAAAGACTCTCGGAAACTCTGTACCACTGTAACACGAACAACATTAGAGGAGATTCACTTTTGATAAAACAATCCATGTGAAAAATCAACACCGGCatgtatttttataaaaatgtttagTATGATCCTGAGATTGTATATTAAGTTGAAACTTGTAAACCGCATGTTGCATGCATTTTTTTATGTCACTGCCTTGAAATGCCTTTCTTAATGACAAAGTAAAGAC

Function

symbol description
hnf1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein dimerization activity. Acts upstream of or within type B pancreatic cell development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in glucose metabolism disease (multiple); liver disease (multiple); and renal cell carcinoma. Orthologous to human HNF1A (HNF1 homeobox A).

NR:

description
hepatocyte nuclear factor 1-alpha

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08036 TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802545.1 True 2292 mRNA 0.55 10 14392607 14399967
XM_039802546.1 False 2261 mRNA 0.55 10 14392608 14399967

Neighbor

gene id symbol gene type direction distance location
pop5 pop5 coding downstream 15750 14374656 ~ 14376857 (-)
rnf10 rnf10,LOC102784202 coding downstream 18374 14365222 ~ 14374233 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding downstream 65095 14324930 ~ 14327512 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding downstream 73089 14317597 ~ 14319518 (-)
ctu1 ctu1 coding downstream 75217 14314594 ~ 14317390 (-)
LOC120561207 NA coding upstream 45496 14445463 ~ 14448015 (-)
asgrl1 NA coding upstream 54121 14454088 ~ 14456312 (-)
LOC120559985 nacc2,LOC102304562,LOC102778489,LOC103397964,LOC101483941 coding upstream 115832 14515799 ~ 14532759 (-)
qsox2 qsox2,LOC102781541 coding upstream 135301 14535268 ~ 14547863 (-)
ddx31 ddx31,LOC102778005 coding upstream 166064 14566031 ~ 14580163 (-)
G61559 NA non-coding downstream 4868 14387523 ~ 14387739 (-)
G61425 NA non-coding downstream 78675 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 106720 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 110259 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 138104 14252253 ~ 14254503 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 11430 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 17208 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 60959 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 85275 14485242 ~ 14485537 (-)
LOC120560922 NA non-coding upstream 154236 14554203 ~ 14556499 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other downstream 28281 14328151 ~ 14364326 (-)
G61264 NA other downstream 803275 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1837322 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2330961 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2798947 11285385 ~ 11593660 (-)
trnaa-agc_14 NA other upstream 539008 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 544529 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 548792 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 551535 14951502 ~ 14951583 (-)
trnas-gcu_1 NA other upstream 567712 14967679 ~ 14967760 (-)

Expression


Co-expression Network