msi1b (msi1,LOC100704609)


Basic Information

Item Value
gene id msi1b
gene name msi1,LOC100704609
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14405140 ~ 14429432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802548.1
CCCCGGTGTGGTGGGATGAGAGCGAGACCGCAGcgggactgactgactgactggaggaggaggaggtggagtctGTCCCAGCCTGCATCTGGCCCGCTCCCCTCTCTGTCACCACGGGCCAAACCCGCCCAGctcctctcactcactcactcactctccgCCTGTTCTCCCGCACGGCacggctcggctcggctcggaCACAACGCAGCACTCaactcacacaacacacacagcgagGACACGGAATGGAGACGGAAGGGAGCCAGAGCAGCCTGTCCACCACGGACTCCCCTCACGATCCCTgcaaAATGTTCATAGGTGGACTCAGCTGGCAAACAACACAAGAGGGCTTGAAGGAGTACTTCTGCAAGTACGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCGGTTACTAAGCGCTCGAGAGGGTTTGGATTCGTCACCTTTGTTGATCAGGCCGGCGTGGATAAAGTTTTGGCCCAAACCAGGCATGAATTGGACTCCAAAACAATCGACCCAAAGGTTGCATTCCCTCGCAGAGCTCAGCCCAAGTTAGTGACACGAACCAAGAAGATCTTTGTGGGAGGcctgtcagtgaacacaaccaTCGAGGACGTGAAACAGTACTTCGACCAGTTTGGGAAGGTCGACGATGCCATGCTCATGTTCGACAAGACCACCAACAGACACAGAGGGTTTGGCTTTGTGACGTTTGAGAACGAGGACGTGGTGGAGAAAGTCTGCGAGATCCACTTCCACGAGATCAACAACAAAATGGTGGAGTGTAAGAAAGCTCAGCCCAAGGAGGTGATGTCCCCCACAGGCTCAGCCAGGGGGCGCTCTCGCGTGATGCCCTATGGGATGGACGCCTTCATGCTGGGCATTGGTATGCTAGGTTACCCAGGCTTCCAGACAGCCACCTACACCAGTCGGAGCTATGCTGGCATCACTCCTGGATATACCTACCAGTTCCCTGAGTTCCACTTAGAGAGGACTCCCCTTCTGACTTCACCCCACCCCCCTGAGCTCACAGCCATTCCTCTGACAGCATATGGACCAatggcagcagcagcggcggcagcagcagtagtTAGAGGCTCCAACCAGTCTCGCACAGCTGGGTTCTTAGGTACGAGCAGCCCGGGCCCGATGGCGGACCTTTATGGGACAGCCGCTCAGGAGTCGGCTGTCAGCAGTTACCTCAGCGCTGCAAGCCCCGCCCCAAGCACTGGATTCAGCCACAGTCTGGGGGGCCCTTTGATCGCCACGGCCTTCACTAACGGCTATCACTGAGAGCtgcagAGCTGTAGACTGCGAGCTGGAAGGAGTTGAAGCTGCTTTGGAGCTGATCTGGCCTGTCTCTGTCCAGTCCACCTCTCTGGCTGTGGCAGctgaacccccccccctcctccaaaCCCCACCCTGGTGTCAGCCTGAACCCAGCCCACCCTACTGACGCCTCCCTTAACTCCACctcctgagtaaaaaaaaaagaaaagaaaagaagaaaagggtCATAAAAGGAGCGAAAAAGTTTATCACCACATGTAATAGCCACACATACAGATGATGTATTTTTAGtgttttctgtttcttcttctgtcaTTTCaacttgctgttttttttgttgttgttttttgcgaTGGCTACGTTGGTTCTTTATCCATTTTGGCTGTGTTTTCTTGATCTCTGAACCTGATCTCtctgagagaaaaggagagaaatcTCCAGGTGAAGCTTGTTTGAAAGGTCAGGAGCTGTTACTGGAAAGCTGTATATGTCACTAGTTCATACTgaattttaacaaaacatttgtgattAATACTATTTCTTGAAAATGTGTCACAAAGTGTATATCTTGGTAGGTTTTTAACAAAGACTTGTAACACTAATAATGGTCTGACGACAAGGGGCATTAGTCACAGTTATGTAATAGGCCTACATGAGCTGtacaattttgtaaaatattgtaaatatgaCTGGTTTCTGGGAGGGGGGGCGGGGCTCAGCTAATGTTTGTGTGCGGGAGGCTTTTGGAGAAATAATACGATCGCTTCTTTCATCAATCCGTATGTGTTGGAAAGTTTGACTGTTACATATCATAGTTTCACATGGAGGTCGAGAACATTTCAGTATGTACATGCTGTATTCCTCTCCAGGCATTTTTATAAAGGACGTGTCATTTTGATTCTgttaatgcatttaaaaaaaaaaaacgagctgAAACGCTACAAGTTCCGCAGGAGAGAGGCTGAGGCTGGAACAACACTTTACCTTTGGGGATTGATGGGTGTGAAAATGCTCGTCTATcaggagaggaagaaaagaagaaaaaaaacatacggTTTTCTTACTTTGTCATATTGTTGTTTTAACTGTGATTTTCAATATGTGCTGATTGTTTGTGAAA
>XM_039802549.1
GCCCCGGTGTGGTGGGATGAGAGCGAGACCGCAGcgggactgactgactgactggaggaggaggaggtggagtctGTCCCAGCCTGCATCTGGCCCGCTCCCCTCTCTGTCACCACGGGCCAAACCCGCCCAGctcctctcactcactcactcactctccgCCTGTTCTCCCGCACGGCacggctcggctcggctcggaCACAACGCAGCACTCaactcacacaacacacacagcgagGACACGGAATGGAGACGGAAGGGAGCCAGAGCAGCCTGTCCACCACGGACTCCCCTCACGATCCCTgcaaAATGTTCATAGGTGGACTCAGCTGGCAAACAACACAAGAGGGCTTGAAGGAGTACTTCTGCAAGTACGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCGGTTACTAAGCGCTCGAGAGGGTTTGGATTCGTCACCTTTGTTGATCAGGCCGGCGTGGATAAAGTTTTGGCCCAAACCAGGCATGAATTGGACTCCAAAACAATCGACCCAAAGGTTGCATTCCCTCGCAGAGCTCAGCCCAAGTTAGTGACACGAACCAAGAAGATCTTTGTGGGAGGcctgtcagtgaacacaaccaTCGAGGACGTGAAACAGTACTTCGACCAGTTTGGGAAGGTCGACGATGCCATGCTCATGTTCGACAAGACCACCAACAGACACAGAGGGTTTGGCTTTGTGACGTTTGAGAACGAGGACGTGGTGGAGAAAGTCTGCGAGATCCACTTCCACGAGATCAACAACAAAATGGTGGAGTGTAAGAAAGCTCAGCCCAAGGAGGTGATGTCCCCCACAGGCTCAGCCAGGGGGCGCTCTCGCGTGATGCCCTATGGGATGGACGCCTTCATGCTGGGCATTGGTATGCTAGGTTACCCAGGCTTCCAGACAGCCACCTACACCAGTCGGAGCTATGCTGGCATCACTCCTGGATATACCTACCAGTTCCCTGAGTTCCACTTAGAGAGGACTCCCCTTCTGACTTCACCCCACCCCCCTGAGCTCACAGCCATTCCTCTGACAGCATATGGACCAatggcagcagcagcggcggcagcagcagtagtTAGAGGCTCCAACCAGTCTCGCACAGCTGGGTTCTTAGGTACGAGCAGCCCGGGCCCGATGGCGGACCTTTATGGGACAGCCGCTCAGGAGTCGGCTGTCAGCAGTTACCTCAGCGCTGCAAGCCCCGCCCCAAGCACTGGATTCAGCCACAGTCTGGGGGGCCCTTTGATCGCCACGGCCTTCACTAACGGCTATCACTGAGAGCAGCTGTAGACTGCGAGCTGGAAGGAGTTGAAGCTGCTTTGGAGCTGATCTGGCCTGTCTCTGTCCAGTCCACCTCTCTGGCTGTGGCAGctgaacccccccccctcctccaaaCCCCACCCTGGTGTCAGCCTGAACCCAGCCCACCCTACTGACGCCTCCCTTAACTCCACctcctgagtaaaaaaaaaagaaaagaaaagaagaaaagggtCATAAAAGGAGCGAAAAAGTTTATCACCACATGTAATAGCCACACATACAGATGATGTATTTTTAGtgttttctgtttcttcttctgtcaTTTCaacttgctgttttttttgttgttgttttttgcgaTGGCTACGTTGGTTCTTTATCCATTTTGGCTGTGTTTTCTTGATCTCTGAACCTGATCTCtctgagagaaaaggagagaaatcTCCAGGTGAAGCTTGTTTGAAAGGTCAGGAGCTGTTACTGGAAAGCTGTATATGTCACTAGTTCATACTgaattttaacaaaacatttgtgattAATACTATTTCTTGAAAATGTGTCACAAAGTGTATATCTTGGTAGGTTTTTAACAAAGACTTGTAACACTAATAATGGTCTGACGACAAGGGGCATTAGTCACAGTTATGTAATAGGCCTACATGAGCTGtacaattttgtaaaatattgtaaatatgaCTGGTTTCTGGGAGGGGGGGCGGGGCTCAGCTAATGTTTGTGTGCGGGAGGCTTTTGGAGAAATAATACGATCGCTTCTTTCATCAATCCGTATGTGTTGGAAAGTTTGACTGTTACATATCATAGTTTCACATGGAGGTCGAGAACATTTCAGTATGTACATGCTGTATTCCTCTCCAGGCATTTTTATAAAGGACGTGTCATTTTGATTCTgttaatgcatttaaaaaaaaaaaacgagctgAAACGCTACAAGTTCCGCAGGAGAGAGGCTGAGGCTGGAACAACACTTTACCTTTGGGGATTGATGGGTGTGAAAATGCTCGTCTATcaggagaggaagaaaagaagaaaaaaaacatacggTTTTCTTACTTTGTCATATTGTTGTTTTAACTGTGATTTTCAATATGTGCTGATTGTTTGTGAAA
>XM_039802550.1
GCGTGCCCCGGTGTGGTGGGATGAGAGCGAGACCGCAGcgggactgactgactgactggaggaggaggaggtggagtctGTCCCAGCCTGCATCTGGCCCGCTCCCCTCTCTGTCACCACGGGCCAAACCCGCCCAGctcctctcactcactcactcactctccgCCTGTTCTCCCGCACGGCacggctcggctcggctcggaCACAACGCAGCACTCaactcacacaacacacacagcgagGACACGGAATGGAGACGGAAGGGAGCCAGAGCAGCCTGTCCACCACGGACTCCCCTCACGATCCCTgcaaAATGTTCATAGGTGGACTCAGCTGGCAAACAACACAAGAGGGCTTGAAGGAGTACTTCTGCAAGTACGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCGGTTACTAAGCGCTCGAGAGGGTTTGGATTCGTCACCTTTGTTGATCAGGCCGGCGTGGATAAAGTTTTGGCCCAAACCAGGCATGAATTGGACTCCAAAACAATCGACCCAAAGGTTGCATTCCCTCGCAGAGCTCAGCCCAAGTTAGTGACACGAACCAAGAAGATCTTTGTGGGAGGcctgtcagtgaacacaaccaTCGAGGACGTGAAACAGTACTTCGACCAGTTTGGGAAGGTCGACGATGCCATGCTCATGTTCGACAAGACCACCAACAGACACAGAGGGTTTGGCTTTGTGACGTTTGAGAACGAGGACGTGGTGGAGAAAGTCTGCGAGATCCACTTCCACGAGATCAACAACAAAATGGTGGAGTGTAAGAAAGCTCAGCCCAAGGAGGTGATGTCCCCCACAGGCTCAGCCAGGGGGCGCTCTCGCGTGATGCCCTATGGGATGGACGCCTTCATGCTGGGCATTGGTATGCTAGGTTACCCAGGCTTCCAGACAGCCACCTACACCAGTCGGAGCTATGCTGGCATCACTCCTGGATATACCTACCAGTTCCCTGCCATTCCTCTGACAGCATATGGACCAatggcagcagcagcggcggcagcagcagtagtTAGAGGCTCCAACCAGTCTCGCACAGCTGGGTTCTTAGGTACGAGCAGCCCGGGCCCGATGGCGGACCTTTATGGGACAGCCGCTCAGGAGTCGGCTGTCAGCAGTTACCTCAGCGCTGCAAGCCCCGCCCCAAGCACTGGATTCAGCCACAGTCTGGGGGGCCCTTTGATCGCCACGGCCTTCACTAACGGCTATCACTGAGAGCtgcagAGCTGTAGACTGCGAGCTGGAAGGAGTTGAAGCTGCTTTGGAGCTGATCTGGCCTGTCTCTGTCCAGTCCACCTCTCTGGCTGTGGCAGctgaacccccccccctcctccaaaCCCCACCCTGGTGTCAGCCTGAACCCAGCCCACCCTACTGACGCCTCCCTTAACTCCACctcctgagtaaaaaaaaaagaaaagaaaagaagaaaagggtCATAAAAGGAGCGAAAAAGTTTATCACCACATGTAATAGCCACACATACAGATGATGTATTTTTAGtgttttctgtttcttcttctgtcaTTTCaacttgctgttttttttgttgttgttttttgcgaTGGCTACGTTGGTTCTTTATCCATTTTGGCTGTGTTTTCTTGATCTCTGAACCTGATCTCtctgagagaaaaggagagaaatcTCCAGGTGAAGCTTGTTTGAAAGGTCAGGAGCTGTTACTGGAAAGCTGTATATGTCACTAGTTCATACTgaattttaacaaaacatttgtgattAATACTATTTCTTGAAAATGTGTCACAAAGTGTATATCTTGGTAGGTTTTTAACAAAGACTTGTAACACTAATAATGGTCTGACGACAAGGGGCATTAGTCACAGTTATGTAATAGGCCTACATGAGCTGtacaattttgtaaaatattgtaaatatgaCTGGTTTCTGGGAGGGGGGGCGGGGCTCAGCTAATGTTTGTGTGCGGGAGGCTTTTGGAGAAATAATACGATCGCTTCTTTCATCAATCCGTATGTGTTGGAAAGTTTGACTGTTACATATCATAGTTTCACATGGAGGTCGAGAACATTTCAGTATGTACATGCTGTATTCCTCTCCAGGCATTTTTATAAAGGACGTGTCATTTTGATTCTgttaatgcatttaaaaaaaaaaaacgagctgAAACGCTACAAGTTCCGCAGGAGAGAGGCTGAGGCTGGAACAACACTTTACCTTTGGGGATTGATGGGTGTGAAAATGCTCGTCTATcaggagaggaagaaaagaagaaaaaaaacatacggTTTTCTTACTTTGTCATATTGTTGTTTTAACTGTGATTTTCAATATGTGCTGATTGTTTGTGAAA

Function

symbol description
msi1 Enables identical protein binding activity. Predicted to be involved in nervous system development. Predicted to be located in nucleus. Predicted to be part of polysome. Predicted to be active in cytoplasm.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802548.1 True 2412 mRNA 0.50 15 14405145 14429432
XM_039802549.1 False 2408 mRNA 0.50 15 14405144 14429432
XM_039802550.1 False 2360 mRNA 0.49 14 14405140 14429432

Neighbor

gene id symbol gene type direction distance location
unc119.1 unc119b coding upstream 21913 14377254 ~ 14383227 (+)
idua idua coding upstream 158835 14234278 ~ 14246305 (+)
LOC120560659 LOC103369208,LOC102291259,LOC102215744,LOC101478239 coding upstream 171752 14212239 ~ 14233388 (+)
LOC120560074 NA coding upstream 193436 14198755 ~ 14211704 (+)
piwil2 piwil2 coding upstream 216223 14147570 ~ 14188917 (+)
prkab1b LOC103353610,LOC101165238 coding downstream 8393 14437825 ~ 14445152 (+)
pla2g1b NA coding downstream 21419 14450851 ~ 14454246 (+)
cfap77 NA coding downstream 119247 14548679 ~ 14555480 (+)
barhl1a NA coding downstream 126957 14556389 ~ 14563699 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding downstream 197189 14626621 ~ 14642212 (+)
G61450 NA non-coding upstream 968 14403633 ~ 14404172 (+)
G61449 NA non-coding upstream 2378 14402055 ~ 14402762 (+)
G61448 NA non-coding upstream 3259 14401231 ~ 14401881 (+)
G61431 rnf10,LOC102784202 non-coding upstream 36652 14365232 ~ 14368488 (+)
G61391 NA non-coding upstream 75393 14328180 ~ 14329747 (+)
LOC120561034 NA non-coding downstream 35571 14465003 ~ 14465725 (+)
LOC120561032 NA non-coding downstream 39765 14469197 ~ 14472189 (+)
LOC120560938 NA non-coding downstream 68349 14497781 ~ 14499057 (+)
G61468 NA non-coding downstream 69748 14499180 ~ 14499434 (+)
G61513 NA non-coding downstream 246705 14676137 ~ 14677372 (+)
c6h12orf43 NA other upstream 12557 14389471 ~ 14392583 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 85634 14317539 ~ 14319506 (+)
G61383 NA other upstream 121269 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 123369 14252256 ~ 14281771 (+)
G61338 htr7,LOC104934772,LOC101065316 other upstream 263090 14141442 ~ 14142050 (+)
LOC120560925 NA other downstream 1898 14431330 ~ 14434597 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 270093 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 326018 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 345081 14774513 ~ 14795943 (+)
cntrl NA other downstream 498941 14928373 ~ 14979797 (+)

Expression


Co-expression Network