hnrnpk (hnrnpk)


Basic Information

Item Value
gene id hnrnpk
gene name hnrnpk
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21627012 ~ 21641536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802564.1
TGTTTGATTTGCCTTCTGTTCAACCAATCGGCACACTTTAGCTAAACTGGTGCATTTCCATGTTCGgtagagaaggaaggaagggggaAGAGCGAGGTGTTGCACTGCAGGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGTACCAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGAGAAGATCGTTACTATGACTCTTACCGTGGCTCAGACGACAGGTCAAATGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT
>XM_039802566.1
GCAGGTTTGTGTTTTGACggtattttccttttttctgtgcCACATTGAGTCTAATGTAGCTGAAGTGCACAGGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGTACCAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGAGAAGATCGTTACTATGACTCTTACCGTGGCTCAGACGACAGGTCAAATGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT
>XM_039802567.1
ctagctagcttgcAACCCagagGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGTACCAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGAGAAGATCGTTACTATGACTCTTACCGTGGCTCAGACGACAGGTCAAATGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT
>XM_039802568.1
TGTTTGATTTGCCTTCTGTTCAACCAATCGGCACACTTTAGCTAAACTGGTGCATTTCCATGTTCGgtagagaaggaaggaagggggaAGAGCGAGGTGTTGCACTGCAGGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGAGAAGATCGTTACTATGACTCTTACCGTGGCTCAGACGACAGGTCAAATGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT
>XM_039802569.1
TGTTTGATTTGCCTTCTGTTCAACCAATCGGCACACTTTAGCTAAACTGGTGCATTTCCATGTTCGgtagagaaggaaggaagggggaAGAGCGAGGTGTTGCACTGCAGGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGTACCAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGTGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT

Function

symbol description
hnrnpk Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleoplasm and viral nucleocapsid. Predicted to be part of spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; gut; otic vesicle; pectoral fin; and ventral mesoderm. Orthologous to human HNRNPK (heterogeneous nuclear ribonucleoprotein K).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12886 HNRNPK; heterogeneous nuclear ribonucleoprotein K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802564.1 True 1916 mRNA 0.50 17 21627012 21641536
XM_039802566.1 False 1878 mRNA 0.50 17 21627118 21641536
XM_039802567.1 False 1828 mRNA 0.50 17 21627557 21641536
XM_039802568.1 False 1910 mRNA 0.50 17 21627012 21641536
XM_039802569.1 False 1868 mRNA 0.50 16 21627012 21641536

Neighbor

gene id symbol gene type direction distance location
agtpbp1 agtpbp1 coding upstream 168665 21428343 ~ 21458347 (+)
golm1 golm1 coding upstream 216282 21403963 ~ 21410730 (+)
LOC120561163 lmbrd2 coding upstream 223622 21393773 ~ 21403390 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding upstream 344504 21278402 ~ 21282508 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 577163 20849986 ~ 21049849 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 1361 21642897 ~ 21649576 (+)
LOC120561417 kif27 coding downstream 8921 21650457 ~ 21660743 (+)
gkap1 gkap1,LOC102779162 coding downstream 20167 21661703 ~ 21672091 (+)
LOC120560432 NA coding downstream 30671 21672207 ~ 21679064 (+)
frmd3 frmd3 coding downstream 50614 21692150 ~ 21751584 (+)
LOC120560273 NA non-coding upstream 6301 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding upstream 8410 21616223 ~ 21618602 (+)
G63628 NA non-coding upstream 139974 21486769 ~ 21487038 (+)
G63627 NA non-coding upstream 142346 21479780 ~ 21484666 (+)
G63576 NA non-coding upstream 279495 21346367 ~ 21347517 (+)
G63714 NA non-coding downstream 203296 21844832 ~ 21845138 (+)
G63715 NA non-coding downstream 233909 21875445 ~ 21875687 (+)
G63792 NA non-coding downstream 490348 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 1262499 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1345645 22987181 ~ 22988040 (+)
LOC120560787 NA other upstream 27723 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 949096 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1136426 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1184919 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1863488 19759596 ~ 19763524 (+)
G63905 NA other downstream 1288363 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1846431 23487967 ~ 23562285 (+)
G64108 NA other downstream 2051126 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3179778 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 3182182 24823718 ~ 24837448 (+)

Expression


Co-expression Network