dgcr8 (dgcr8,LOC102791485)


Basic Information

Item Value
gene id dgcr8
gene name dgcr8,LOC102791485
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5607031 ~ 5626385 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802582.1
TGAGTTAGTTTGCCGCTGTGGTTTTCTTCAAGATGGCGGGGCTGCAGTTGAAGCAGTATGGCGGCGCATGGAGAATAAAATAATTTAGAAAGGTAGTCATATGCCCGATAGGAGACAGCTGTTTCATATTTATCGCTCCCAGAAGAAACCAGTGGAGGATGATCAGTGCCTAGATCCCATATTAAGCTGAATGCATTGTGATTTCCAATAATTGAGACAGTGATTCTGAAAGCTGTCTAcattaatgaaaagaacaatGTAGTCAGCTTAGCATTTTCACCTCTGGTACGCGGTCTATACAGGGATGTGCTTCTGCATGCATTCTGGGTTTAGATAAGAAAGTCTCAACAGGTCAGATTTTAGAATAAACATATCGGTCTGTATAAGTTGTAATTCGTTATACAGAGGAAATGGAGATAGATGATGTGCTACCCCCTCTCCCCTTGGAGCCACCTGATGATTTTGGCCAAGATGAGGGCAGGGCACCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGTAATGGACGTTAGCTCTGGTGGTGATGGATACACATACACCCCAGGGGACGGGGAAGCCAACTCACAGCAGGCCCTCAGCAAGGGCTCGATAACTTTTTATAGCCACCTCTCAGATGAGGCCAGTGCCATCCCACCATGCCCTAGAACAGCCCGCCACGCGCCCCCAGTCACCGGGTTCCTACCAGACCTAAAGCTGCTTAGAGACGTTAAGATCAGCGTAAGCTTCACTGAAAGCAGCAATAGCAAAGACAGGAAGGTTTTGTACACAGGTGAGGGGCAGGAGGGAGGAAGTGATGACGGCTTAGACAGCGTAAATGGTGAGTTGCACGACTCGACTAGTGAGCAGGAAGTAGCCGAGGGTAGCTCTGGAGCAGGAAACCTAGCAGGCAGAAGATCAGAGGAGGCTGAGGTAGACTCGGAAAACAAGGTAGAGTTCGCCGTCCTGGATGAGTTGGATGACTTCTACGAGAACTTCCTGGATGACGACGACATGGAGCACGGTGGCTTTAAGTCTGATGTCATAGTTCAGCAGGAGCAAGCGGATGAGGAGGCCGTAGCTTTCTCCTATGGGGAGGAGTTTGACAATGACGTCGATGCTCTGCTGGAGGAGGGCATGCCAGTCCCAAAAAAGATGCGTCCCGCAGAGGACAAATTTGGCGGGGACAGTGATCATCAGTCAGATGGTGAAGGAGGTGTTCATCCCATGATGACCAAAATTAAGACTGTCCTGAAGAGTCGTGGGCGTCCACCCACTGAGCCTCTACCTGATGGATGGATCATGACATTCCATAACTCGGGCATTCCAGTCTACCTGCACAGAGAGACCAGGGTGGTTACCTGGTCCAGACCCTACTTCCTTGGGACGGGCAGTATAAGGAAACATGACCCTCCTACCAGCAGCATTCCTTGCCTACACTACAAGAAAATGAAGGATCTTGAGGAGAAGGAGCTGAATGGGGAGGCGACGCCTAATGACGTGGAGTCTCCTGTTAAGCCTGCCGACGAGGTCAATGGCGAACAGAGTGCAGGCAAGTCAGATGCTACAGCTGAGGAGCAGGACGGTGTCCCTCCCTCCAGTATGACTGACGGCGACCCAGATGTAGAGGCTACCACTAATAACAGCCTGCAGCTTAAAGCTCTCTGTGACATTGCCCACGGAGCCTTAGGACAAGTTAAGGCCAAGGTGGAGGTGTGCAAGGACGAGTCCATAGAACTTGAAGAGTTCCGTCTGTACCTGGAAAAATGCTTTGACTTTGAACAAGTCACAGTAAAAAAGTTTCGTACCTGGGCCGAGCGGAGGCAGTTCAACAGAGACATGAAGAGGAAGCAGGCCGAGTCGGAGAGACCCATCCTGCCTGCCAACCAGAAACTCATCACACTGTCGGTCCAAGATGCACCAACTAAGAAAGAATTTGTCATCAACCCTAACGGGAAGTCTGAAGTTTGCATCTTGCATGAATATATGCAGCGTGTCCTAAAGGTTCGACCTGTTTACAACTTTTTTGAATGTGAGAATCCAAGTGAACCCTTTGGAGCGTCAGTCGTTATAGATGGAGTAACGTACGGCACAGGAACCGCAAGCAGTAAAAAACTTGCTAAGAATAAAGCTGCTCGAGCCACACTGGAAATCCTCATCCCTGACTTTGTGAAGCAGACCTCAGAGGAGAAGCCTGTTGAGGGCGATGAACTGGAGTATTTTAATCATATCAATATAGAAGACTCAAGGGTGTATGAGCTGACCAACAAAGCAGGACTACTTTCGCCATATCAGATTCTTCATGAGTGCCTTAAAAGAAACCATGGAATGGGAGACACCAGCATTAAATTTGAGGTGATCCCTGGGAAAAACCAGAAGAGTGAATATGTGATGACGTGTGGGAAGCACACCGTGCGTGGCTGGTGCAAGAACAAGAGGGTTGGCAAACAACTAGCATCTCAGAAGATCTTGCAGATGCTTCATCCCCACGTCAAGAACTGGGGTTCACTGCTGCGCATGTATGGCAGAGACAGCAATAAGATGGTCAAGAAGGAGAGCTCTGACAAGAGTGTGATTGAGCTCCAGCAGTATGCCAAAAAGAACAAGCCAAACCTTCATATTTTGAACAAACTGCAAGAGGAAATGAGGAAACTAGCCACGCAGAGGGAGGAAACTAGGAAGAAGCCCAAGATGACCATAATGGAGTCAGCCCAGCCAGGGAGTGAACCCCTCTGCACTGTTGACGTTTAAGTCTCGAAATCACTGATGGAACCACAGCACTGAAACCcagtcactgtctctctctctctctctctctctctctcacacacacaatgcatcaCTGAGATCTAATGGCAATATAGTTCCACATTGACCTGGCCAGGTAGCTTGCTGCTTGCTTCCTTCGCCCATGTTGTATTGGTTCAGCTGGTAGATGTAAGGGTAGATCTAAATGCACTAACAGACAGTAGAGCAAATCTCGTCTACCTCTCTAGATGCATCCTCGCTATGCcactagaaaaataaaaaaaataaaatcacccAGGCTACAGAGAAGTTAATGTGACTTGATAACACATGAACCACATCAAAATAGAACTGCATGCTTGTTTTGATTGCGTGATTGTCGTTTTTAACAGTCGCAATAGTACCAGCACCtattagttttgtttgtgcttACAGTATTTGAAAGGGACTACTAATACTTGTGTATTTATACCACTTGTTTAATTAGGGAAACAAAGTTACTTGTTTATTGGGTATTGTGCTGGTCGGTGTTCTGGATATTTTGGCTGATGGATACAAaacatgcctttttttttttttttttttcctcagaatGGACAGTTGCTGTTATGGTTTGCACGATTTGAAAACATGTGTTGATGAAGTGATGACTATTCAGAACTATTGTTATGCACTTGTGTCCGGTCAGATATTTTTGTCAACTGATCATGTTGGTACAAGATTTTCTGCTTTTAGGATATTTGGGTTGACTTGCATTTGGAGGGAATTGTTGCCTTTTTTCCCCCCGTCTTTTGCTTTGGCAATACAAGTCTCATCCTACTTCCCATGCCAACACTGCAGTAAACCCAATCACCGAGTACTGTAATACCTTTAGAACAAATTATCATTTCTTTTATGCTCTATGTTCTTGCTAGCTTTTTATTAAAGTACTAATGTCATGCACACCAGCTAACCGTTTGGTACATTTCCGTAGCTTTTCCGTTTTGGTGCCCTTAAGAAATTACATTGGCTACGTGTTGCCTTAGTTCATCCATTTCTTGAAGGGCTCAGAGTATAAAAGTACAGTGGACCTAAAACACCCTTCAACAGGAAGAAGAAAGACCAAGTCCCCTTTACTTGATGAAGCATTTATTAAGCCAGTTAGTATTTTAATAAAGAACAGCTGTAAAACATCAGATACTTGAGGGAAAATGCCTCCAGCATGTGCCGATTTTTAAAGACTCAATCCTTAATGgattgtgtattttgtttgtcATTGTGATAAGTGATCATAGTTTGACCACAAGCagaatacatttttcaaaaggcAGCCTTGCCAAATTTAATAGGTACATTGACACATACAAAATGCAATCAAGTCATTTAGTTCAACACAAGCTGATGAAAGTGTGTATACCAAAGCTTACATCCAGTCTTATGCATTTTATAGAATTAATGTTGCTGCAAACTACAGAAGAAACATCGGACACGGGAAAATACCGACTACTTACTTGCTGGAACAAAAATAGAAACTGCTGTGCATTTTTTGTCAAAGTATTTGGCCTGTGGTTTTTCTACAACATATTCAAGGACACATTGCAGTTTAAACACAAGGCTGTTGTCATATTATAGATTGCTTTAAGAATGTGCTTTTCCCCCCCCCCGTGCATTTGTCTTGCCAAGTGTGTCtgtgagaaggaaaaaaaacaaaatactgctTTGACGTGTTGCTGTTGAGCTGTACCAATGAGTGGTTTTGAGATGTTGCTGCCTAGAAAATTATGTATTGCAACCTGAGCTCTATGACTTCAGTGGTATTTGTtatgcaaaataaaatgtcttgACTAATGA

Function

symbol description
dgcr8 Predicted to enable double-stranded RNA binding activity and primary miRNA binding activity. Predicted to be involved in primary miRNA processing. Predicted to be part of microprocessor complex. Orthologous to human DGCR8 (DGCR8 microprocessor complex subunit).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18419 DCGR8; microprocessor complex subunit DGCR8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802582.1 True 4580 mRNA 0.45 14 5607031 5626385

Neighbor

gene id symbol gene type direction distance location
ranbp1 ranbp1,LOC102791189 coding downstream 12127 5590574 ~ 5594904 (-)
pgam5 pgam5 coding downstream 108135 5488756 ~ 5498896 (-)
si:dkey-112e17.1 LOC103368838 coding downstream 161567 5421621 ~ 5445464 (-)
galnt9 galnt9 coding downstream 740056 4760116 ~ 4866975 (-)
si:ch211-158d24.2 megf9,LOC102787576 coding downstream 911821 4644604 ~ 4695210 (-)
tango2 tango2 coding upstream 16819 5643204 ~ 5667209 (-)
tbx1 tbx1 coding upstream 422578 6048963 ~ 6061862 (-)
hk2 LOC103369118,LOC106531304 coding upstream 1268817 6895202 ~ 6941736 (-)
ch25hl3 NA coding upstream 1534916 7161301 ~ 7169700 (-)
erlin2 LOC100709255,LOC101468631,LOC102303107,LOC102789125,LOC102208735 coding upstream 1556428 7182813 ~ 7212011 (-)
G59388 NA non-coding downstream 91667 5467335 ~ 5515364 (-)
G59373 golga3 non-coding downstream 153136 5435419 ~ 5453895 (-)
G59314 NA non-coding downstream 601368 5004966 ~ 5005663 (-)
G59312 NA non-coding downstream 657508 4949271 ~ 4949523 (-)
G59290 NA non-coding downstream 865900 4738049 ~ 4741131 (-)
LOC120560122 NA non-coding upstream 2731 5629116 ~ 5633186 (-)
G59437 NA non-coding upstream 4365 5630750 ~ 5631797 (-)
G59440 NA non-coding upstream 15930 5642315 ~ 5642551 (-)
G59441 NA non-coding upstream 16231 5642616 ~ 5642842 (-)
G59457 NA non-coding upstream 332523 5958908 ~ 5961150 (-)
LOC120561494 NA other downstream 15221 5589573 ~ 5591810 (-)
LOC120561493 NA other downstream 140594 5466223 ~ 5466437 (-)
LOC120560375 NA other downstream 1170715 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 1176941 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 1382463 4209748 ~ 4224568 (-)
G59521 NA other upstream 799821 6426206 ~ 6426811 (-)
G59563 NA other upstream 896374 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 1364818 6991203 ~ 6996856 (-)
G59881 NA other upstream 1957701 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 2101175 7727560 ~ 7766012 (-)

Expression


Co-expression Network