ranbp1 (ranbp1,LOC102791189)


Basic Information

Item Value
gene id ranbp1
gene name ranbp1,LOC102791189
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5590574 ~ 5594904 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802585.1
TGGGCGCGGGCATACGTAGGAAATTCGGCGCGCGAAAGCTGTAGCAGGAAGTGAGAGCAGCCGAGGGTAACGGCGGCCAGTCTGGGTTTTGAATCTATCCAACTACTTCCATAATCTACAAACATCTACATTAATATGGCAGACCCGAAGGACCAGGAAGAGCCTGAAACCACTGCAGATAATGCAGAGGATTCTAATCATGATCCCCACTTTGAGCCCATCGTGTCCCTTCCTGAGCAAGATGTGAAAACATTagaagaggatgaggaggaactctttaaaatGCGGGCTAAACTATATCGTTTTGCCTCTGAGAATGATCCACCAgagtggaaggagagaggaacagGTGATGTCAAGCTGCTGAAACACAAAGAGAAGGGCACAATCCGCCTTTTGATGAGGAGAGACCGCACCTTGAAGATTTGTGCCAATCATCACATTATGCCTAGCATGGAGCTGAAGCCCAACGCCGGCAGTGACAGGGCATGGGTGTGGAACACACTAGCAGATTATGCTGACGAAAGCCCTAAACCTGAACTCCTGGCGATACGCTTTTTAAATGCAGAAAATGCTCAGAAGTTCAAGGGAAAGTTTGACGAGTGCAAGGAGGAGGTCAAAAAAAGTCTTGATGGAACAGGCAACACTGATAGCGCAAACAAAGTGGCAGCAAAGCTGGAGGAACTCTCTGTAAAGGACAAGGCATCAGAAGAAAAAGAGGTCAAAAAGGAGACTGAGGTGAAAGAAGATGAGAAAAAAGAGGTGAAGGCTGAGGAGAAGAATTGAGAACCAAGAACTTGCTTTGCTGATCTTCAATATATCagtgtttcctctttttct
>XM_039802586.1
GCATACGTAGGAAATTCGGCGCGCGAAAGCTGTAGCAGGAAGTGAGAGCAGCCGAGGGTAACGGCGGCCAGTCTGGGTTTTGAATCTATCCAACTACTTCCATAATCTACAAACATCTACATTAATATGGCAGACCCGAAGGAAGAGCCTGAAACCACTGCAGATAATGCAGAGGATTCTAATCATGATCCCCACTTTGAGCCCATCGTGTCCCTTCCTGAGCAAGATGTGAAAACATTagaagaggatgaggaggaactctttaaaatGCGGGCTAAACTATATCGTTTTGCCTCTGAGAATGATCCACCAgagtggaaggagagaggaacagGTGATGTCAAGCTGCTGAAACACAAAGAGAAGGGCACAATCCGCCTTTTGATGAGGAGAGACCGCACCTTGAAGATTTGTGCCAATCATCACATTATGCCTAGCATGGAGCTGAAGCCCAACGCCGGCAGTGACAGGGCATGGGTGTGGAACACACTAGCAGATTATGCTGACGAAAGCCCTAAACCTGAACTCCTGGCGATACGCTTTTTAAATGCAGAAAATGCTCAGAAGTTCAAGGGAAAGTTTGACGAGTGCAAGGAGGAGGTCAAAAAAAGTCTTGATGGAACAGGCAACACTGATAGCGCAAACAAAGTGGCAGCAAAGCTGGAGGAACTCTCTGTAAAGGACAAGGCATCAGAAGAAAAAGAGGTCAAAAAGGAGACTGAGGTGAAAGAAGATGAGAAAAAAGAGGTGAAGGCTGAGGAGAAGAATTGAGAACCAAGAACTTGCTTTGCTGATCTTCAATATATCagtgtttcctctttttct

Function

symbol description
ranbp1 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

NR:

description
PREDICTED: ran-specific GTPase-activating protein isoform X1

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802585.1 True 840 mRNA 0.47 6 5590574 5594904
XM_039802586.1 False 825 mRNA 0.46 6 5590574 5594895

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 91678 5488756 ~ 5498896 (-)
si:dkey-112e17.1 LOC103368838 coding downstream 145110 5421621 ~ 5445464 (-)
galnt9 galnt9 coding downstream 723599 4760116 ~ 4866975 (-)
si:ch211-158d24.2 megf9,LOC102787576 coding downstream 895364 4644604 ~ 4695210 (-)
LOC120559971 NA coding downstream 947836 4639104 ~ 4642738 (-)
dgcr8 dgcr8,LOC102791485 coding upstream 12127 5607031 ~ 5626385 (-)
tango2 tango2 coding upstream 48300 5643204 ~ 5667209 (-)
tbx1 tbx1 coding upstream 454059 6048963 ~ 6061862 (-)
hk2 LOC103369118,LOC106531304 coding upstream 1300298 6895202 ~ 6941736 (-)
ch25hl3 NA coding upstream 1566397 7161301 ~ 7169700 (-)
G59388 NA non-coding downstream 75210 5467335 ~ 5515364 (-)
G59373 golga3 non-coding downstream 136679 5435419 ~ 5453895 (-)
G59314 NA non-coding downstream 584911 5004966 ~ 5005663 (-)
G59312 NA non-coding downstream 641051 4949271 ~ 4949523 (-)
G59287 NA non-coding downstream 748431 4732630 ~ 4842143 (-)
LOC120560122 NA non-coding upstream 34212 5629116 ~ 5633186 (-)
G59437 NA non-coding upstream 35846 5630750 ~ 5631797 (-)
G59440 NA non-coding upstream 47411 5642315 ~ 5642551 (-)
G59441 NA non-coding upstream 47712 5642616 ~ 5642842 (-)
G59457 NA non-coding upstream 364004 5958908 ~ 5961150 (-)
LOC120561493 NA other downstream 124137 5466223 ~ 5466437 (-)
LOC120560375 NA other downstream 1154258 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 1160484 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 1366006 4209748 ~ 4224568 (-)
G58994 NA other downstream 1901236 3688629 ~ 3689338 (-)
G59521 NA other upstream 831302 6426206 ~ 6426811 (-)
G59563 NA other upstream 927855 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 1396299 6991203 ~ 6996856 (-)
G59881 NA other upstream 1989182 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 2132656 7727560 ~ 7766012 (-)

Expression


Co-expression Network