cds1 (cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064)


Basic Information

Item Value
gene id cds1
gene name cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33077246 ~ 33112816 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802687.1
CTAGGAGGAGGGGAGCAGGGATTGGGACTGCGGTGataaacaaacacacgcagTGCTGTCGTTAGTGTTTTGTCGAGCTCTGTTGCTACACTTTGGCAGCACCGGCTGACTTTCAGGAGAGCTGACCTTCTTCACGGACCAAGCATTAAAGTCAAGCccgggttaaaaaaaaaaaatccaggacTTTATCTAATAAAACCCCAGGATTGGTGtccccttcttcctccctccctccctcctccccctcggTGTCGGCTTATGTGACACATTAACGTCCCGGGCAGCGAAACGAGCGAAACATGACGGAGCTGAGAAAGCGAGGCGGAGGCGGAGGAGACCCTGACAGCACCGAGAATATCAGCGATAAGGAGGCCGATGGGGATGACAGGCTGGGCTTGCAAGGTGATGCAGAGGGAGAATGTGATGGGGACTCCAAAGCAGACACGCCAGATGTTCCTCTCCCCACAGCAGACACAGACAACACTCCACAATACCTGAACAAAGCTCTGGAGGGCCTGCCGCCCAGATGGAAGAACTACTGGATACGAGGAGTTCTGTCTTTAGCCATGATTTCTGGCTTTTTTCTCATCATCTATATGGGACCTGTTGCTCTTATATTAGTGGTCATGACTGTCCAAATCAAGTGTTTCCAAGAAATCATCACCATCGGCTACAGAGTTTACCATTCCTATGAGCTGCCTTGGTTCAGGACACTAAGCTGGTACTTTCTGATATGCGTCAACTACTTCTTCTATGGGGAAACTGTTGCAGATTACTTTGGGGCTCTGGTGCAGAGGGAGGAACCTCTGCAGTTCCTGGCTCGCTATCACCGCTTCATCTCCTTCGCTTTGTACCTCGCAGGTTTCTGCATGTTTGTGCTGAGTTTAGTGAAGAAACATTACCGCCTGCAGTTTTATATGTTTGCTTGGACCCATGTGACCCTGTTGATTGTGGTAACTCAGTCCCACCTTGTCATTCAGAACCTGTTTGAAGGAATGATCTGGTTCATTGTCCCGATCTCCATTGTGATATGCAATGACATTATGGCCTATCTGTTTGGATTCTTCTTTGGGAGGACTCCACTGATCAAGCTCTCACCTAAGAAGACATGGGAGGGCTTCATCGGAGGTTTCTTCGCCACTGTAGTCTTTGGCTTTATCCTGGCCTACCTCCTGTCTCAGTTCCAGTACTTTGTGTGTCCTGTGGGCGTCAACAGTGAGACCAATGGGTTTACAGTTGAATGTGAGCCTTCTGATATATTTGTGATGCACGAATACACTCTTCCTGCTGTGGTACAAAACATACTGAGATGGAAAACGGTAAACCTGTACCCCTTCCAGATCCACAGCATCTTCCTCTCGTCCTTCGGGTCTCTCATCGGGCCTTTCGGCGGCTTCTTTGCCAGCGGCTTCAAGCGAGCCTTCAAAATCAAAGACTTTGCTAACACCATCCCCGGCCACGGTGGCATCATGGATCGATTCGACTGTCAGTACCTGATGGCCACCTTCACACACGTCTATATAGGCAGCTTCATCAGGGGACCGAACCCAAGCAAGGTGCTACAGCAGCTGATGATGCTTCGGCCTGAACAGCAGCTCAGCATTTTCCACACTCTGCACTCccagctgagagagagggggatgctcCCCCAAGCTGCTGCCCAGGCTGAGTGAAAGACAGCCAGCTTCACAGGGTGATGACTGCAGAGTGTGTGATGGTTTGGAAAGTTTGTGtaagcatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcttaggTATGGCTGTATGGTGTGTGATCCCAGGCCTCTCTCAGAGCGTCATCCTGCCGACTCTTCATTTGACTTCCAACCAGCTGATAATCACGACTTTGAACCTGAGGTGACTCTCCAGTGTACGTGGAATAACCTCgtagtaaaaaacaacaacaacacaataccAACGACAACAAAATAGGCGGCTTTGTTGCTTTCCACTTGGACCAGCACATAATCTTCAACACGCTTCACGAGTGAACAGGCCGTCCCCATCCTAAAAACGTACAGACTGAAGATAAAATGTCTTATCGAACAAAACGGACCCTAAAGCACATGGCTTTCTCAGTGCAGGTGGACGTTGGATGTGCAGTTTCCCTGTGGACAGACAATATTGCACTGACTTAAGCTGAACAAAAGgatttaaaaagctttttacCAGCATAAACTGGGCCCAAAGTGTTGGGCACGTGGACCTGAGGTACAGCAAACAGACTGTTGAGACTTGTCTTTCTGGGGTTTGGGTGTGGGCGAAGCAATGATGCAGCAGGGTTGTCAGAATACTACAGTATAGACACTGTTTTATATACTATGCTCTATTTAATGGTCCTAACCTCACAGCTTAACAAAACATGTAGCATGTACGCAAGTCCTGTCTTGGGCTACAGCTAACTTAGCCATGTTTATTCTCTTCTTCCACAGAGGGAACTTTAAGCTTTTAGGTTTCTGTCTAAATCTAAATAACTCGCACAAATAAAGTCAATCCAGATTGACTGTAGGCATGTTAACGCAAAAACTAGAGCATCAGCACTCAAGTTAATGTATTGTACATAAATATACTGAAGATATTTAGCTGcacaaatacataatacatactataactaaaaaaaacactttttaagcTATGAAAAATGATATGCAAAAAAGAGATATAACTCATTTGTAGCCTTTAGCATGAACAAATTAGATTTTTATGAGGTGGGATGTAGATTTGATCCGAGGTTGCTGCTCATTTAGAGGGTGTGCTGGTTGAACCTATAAAAGagattgggggaaaaaaaaaaaaaaagtatttaaaggaatagtttgacatttggaAAATACTCTTATTGTTGGCGAGAATTAGATCAGAAGATCGACACCAAtctcgtgtctgtgtgttgggTATGTAGCTTGAGCCGtgagttaaagtgctcatatcatgctcattttcaggttcataattgtatttagaggttatatcagaataggtttacatagtttaattttcaaaaaacatcatatttttattGTACTGCACGTTGCTGCAGCTCTtcctttcaccctgtgtgttgagctctctgttttagctacagagtgagacatctcacttctgtaccatctttgttgggaatcgcacatgtgcagtagctaggtaaggactaccagctagtcagttgcagagcagGAGGGAGTGTCACCCTAGCAGcgaggcgagcattataacgtgtgttacaaagtgaggtacgttcgtcacggaagtaaaggctggactacaatagagctggttgtgaacagtgttttctgttggagatggtaagtccccttggggtggactttgagctttttcactttgtaaacctataatatgcacaaaaaagatatagaacACAATAGGGAaatggaaaaagccaaaaaacataatatgagcactttaaagattGGAAGCCTGGTGAAACAGCAAAATTCTAAAATCTGCCTACCAACACCTATAAAGCTCTTAACACAATGTTGGTGAACGACAGTTGCGTGCACTAACCTCCCGTAGTTGTCACAGTGACGACCAAACGCGTGCAGCTACCTTGGATGCTACGGACTACGTTGGAATGTGAATGATCACAAATTGATTATCTGTTGTTCATCAAGAAAGATACACCACATCTAAAACTTTAAGTTGTAATTtttacatgtttgtttgtgtacggattaaacaaacaatttatGTGT
>XR_005639474.1
CTAGGAGGAGGGGAGCAGGGATTGGGACTGCGGTGataaacaaacacacgcagTGCTGTCGTTAGTGTTTTGTCGAGCTCTGTTGCTACACTTTGGCAGCACCGGCTGACTTTCAGGAGAGCTGACCTTCTTCACGGACCAAGCATTAAAGTCAAGCccgggttaaaaaaaaaaaatccaggacTTTATCTAATAAAACCCCAGGATTGGTGtccccttcttcctccctccctccctcctccccctcggTGTCGGCTTATGTGACACATTAACGTCCCGGGCAGCGAAACGAGCGAAACATGACGGAGCTGAGAAAGCGAGGCGGAGGCGGAGGAGACCCTGACAGCACCGAGAATATCAGCGATAAGGAGGCCGATGGGGATGACAGGCTGGGCTTGCAAGGTGATGCAGAGGGAGAATGTGATGGGGACTCCAAAGCAGACACGCCAGATGTTCCTCTCCCCACAGCAGACACAGACAACACTCCACAATACCTGAACAAAGCTCTGGAGGGCCTGCCGCCCAGATGGAAGAACTACTGGATACGAGGAGTTCTGTCTTTAGCCATGATTTCTGGCTTTTTTCTCATCATCTATATGGGACCTGTTGCTCTTATATTAGTGGTCATGACTGTCCAAATCAAGTGTTTCCAAGAAATCATCACCATCGGCTACAGAGTTTACCATTCCTATGAGCTGCCTTGGTTCAGGACACTAAGCTGGTACTTTCTGATATGCGTCAACTACTTCTTCTATGGGGAAACTGTTGCAGATTACTTTGGGGCTCTGGTGCAGAGGGAGGAACCTCTGCAGTTCCTGGCTCGCTATCACCGCTTCATCTCCTTCGCTTTGTACCTCGCAGGTTTCTGCATGTTTGTGCTGAGTTTAGTGAAGAAACATTACCGCCTGCAGTTTTATATGTTTGCTTGGACCCATGTGACCCTGTTGATTGTGGTAACTCAGTCCCACCTTGTCATTCAGAACCTGTTTGAAGGAATGATCTGGTTCATTGTCCCGATCTCCATTGTGATATGCAATGACATTATGGCCTATCTGTTTGGATTCTTCTTTGGGAGGACTCCACTGATCAAGCTCTCACCTAAGAAGACATGGGAGGGCTTCATCGGAGGTTTCTTCGCCACTGTAGTCTTTGGCTTTATCCTGGCCTACCTCCTGTCTCAGTTCCAGTACTTTGTGTGTCCTGTGGGCGTCAACAGTGAGACCAATGGGTTTACAGTTGAATGTGAGCCTTCTGATATATTTGTGATGCACGAATACACTCTTCCTGCTGTGGTACAAAACATACTGAGATGGAAAACGGTAAACCTGTACCCCTTCCAGATCCACAGCATCTTCCTCTCGTCCTTCGGGTCTCTCATCGGGCCTTTCGGCGGCTTCTTTGCCAGCGGCTTCAAGCGAGCCTTCAAAATCAAAGACTTTGCTAACACCATCCCCGGCCACGGTGGCATCATGGATCGATTCGACTGTCAGTACCTGATGGCCACCTTCACACACGTCTATATAGGCAGCTTCATCAGGGGACCGAACCCAAGCAAGGTGCTACAGCAGCTGATGATGCTTCGGCCTGAACAGCAGCTCAGCATTTTCCACACTCTGCACTCccagctgagagagagggggatgctcCCCCAAGCTGCTGCCCAGGCTGAGTGAAAGACAGCCAGCTTCACAGGGTGATGACTGCAGAGTGTGTGATGGTTTGGAAAGTTTGTCTCCAGGGCCTACGTCCAAACATCCGTCTCCTTTCGACATCCTCTCTTTGCTCTGAAAAAAAAGGACGAGGCGAGTTTGGAACTGGGCTGCAGACTGGACTGCTAACATTTGCATCCGTGGCCTGTGCAATGTTCTGTTCACTTCCTTTAGTTGTTGGACGAAAAAGgatgttttaatttatttgtccagtttgttttgttcatgttttcCTCATACATAGAACTGCATTTTAGGGTGTTTTCCCCAATTTAAAGTGAATGGGGGTGCTGGGTGGATTTTTGGGACCAGCTGTATTGTACTGTATAAATGTATAAGCCTCCATCTGAGGCAAAACCCACACAACTGCTTTACAGGCTTTTCTGTGTCCAACCTACATACTGAACACGATAAGGCAAAGTGTGTAGGCATCTGGACAGTGTTCACACTACAGCAATCAGACCAAAATTCAACACAAAccgcagattttttttttaacgctgTTGTATCGAGTCTGGAGTGTGCCACCAGAGTaattaaagaagaagaaatttaGTTTTAAAAGACAGTAATGAAGTTAAACTATTAATTgtcaaaatacatacattactTTATAGTGTCACTtaaatgcatgaatgaatgattatAATGAAGTGTATTATTCCATGGGCACACTCTAGACTCCACAGATTTACAGTTTTAGTTCAAATTAGATTGAAGTTGTGTGGactaattttatatttttattcaaGTCATGAAGGTAAAACACTTGTGGTACACAAATGTAAAGGTAGGGAAGAAAAATGTAGTTTAAGTAGCCCAGATTTCAGGTTTTGATGCACTGCAGATGTTTGGTtgcttgtctttttttaatttatcattttgtgtatgtttgatttgttttgagCAGAAATGTTTTCTAATGAAGATCTATAGCTTTTGGAGTGGATGCAATTAAAGATGATACTGAGGAAGTATGCTGTTAATAATAGGGGCAATACAAAAGTCATGTATAAACCAAATATTGATACCTGTTAGGGATATTGTAAAGCTGTTTATTGTATGGAGGtgaaataaagatttttttctttta

Function

symbol description
cds1 Predicted to enable phosphatidate cytidylyltransferase activity. Acts upstream of or within angiogenesis and positive regulation of ERK1 and ERK2 cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human CDS1 (CDP-diacylglycerol synthase 1).

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 2

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802687.1 True 3788 mRNA 0.45 13 33077246 33110833
XR_005639474.1 False 2802 transcript 0.45 14 33077246 33112816

Neighbor

gene id symbol gene type direction distance location
wdfy3 NA coding upstream 6736 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 175699 32854714 ~ 32901547 (+)
LOC120560720 sec14l2 coding upstream 417916 32636836 ~ 32659330 (+)
ascc2 ascc2 coding upstream 450557 32614892 ~ 32626689 (+)
trnap-ugg NA coding upstream 505487 32571688 ~ 32571759 (+)
rasgef1ba rasgef1b coding downstream 44098 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding downstream 135588 33248404 ~ 33252407 (+)
prkg2 prkg2 coding downstream 190523 33303339 ~ 33344015 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 666191 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 1057659 34170475 ~ 34187620 (+)
G66439 NA non-coding upstream 4524 33071537 ~ 33072722 (+)
G66340 NA non-coding upstream 338871 32720755 ~ 32738375 (+)
LOC120560708 NA non-coding upstream 383159 32685269 ~ 32694087 (+)
G66319 NA non-coding upstream 463338 32612999 ~ 32613908 (+)
G66293 NA non-coding upstream 561741 32511619 ~ 32515505 (+)
G66496 NA non-coding downstream 14886 33127702 ~ 33127902 (+)
G66497 NA non-coding downstream 22974 33135790 ~ 33136017 (+)
G66498 NA non-coding downstream 27052 33139868 ~ 33140093 (+)
G66521 bmp3,LOC102780994 non-coding downstream 236690 33349506 ~ 33350553 (+)
G66522 bmp3 non-coding downstream 238883 33351699 ~ 33352950 (+)
slc39a14 slc39a14 other upstream 464308 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 566509 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 606419 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 707262 32364860 ~ 32369984 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other upstream 747256 32322507 ~ 32329990 (+)
antxr2a antxr2 other downstream 404783 33517599 ~ 33603625 (+)
G66578 NA other downstream 663109 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1401194 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 1653114 34765930 ~ 34773806 (+)
G66832 NA other downstream 1748683 34861499 ~ 34864690 (+)

Expression


Co-expression Network