LOC120560324


Basic Information

Item Value
gene id LOC120560324
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20397583 ~ 20400992 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802690.1
TCTGACGTTGAGGTTGAGGCAGGGCAAACCGAGGCAGACGAGTCCTCAGAATGTAAACATGGTGACAGGTATCGTTAGATGAGAGAAACGCCAAAATGGTCTTCGAAAGCTTGGTGGTAGATGTCCTCAACCGATTTTTAGGGGACTACGTTGTCAACCTTGACAGCTCACAGCTGAAGCTTGGAATATGGGGAGGTGATGCTGTTCTTACAAATCTTGAAATAAAGGAAAATGCCTTGAGTCAACTTGACATTCCTTTTAAAGTGAGAGCCGGCCATATAGGACGGCTGGAGCTAAAGATACCATGGAAAAACCTCTACACCCAGTCAGTAGAAGCAACACTGGATGGCGTCTATCTGCTCATAGTTCCCACAGCAAGTATAAAGTATGATGCAGAAAAGGAGGAGAAGCAGCTACAGGAGGCTCGTCAGAGGGAGCTACAGCGGATAGAGGAGACAAAGATAAAGGCTGCTGAGCAAGAGAACCCTGATCTGGAAAAACAGGACACTTTTGTGGAGAAGCTTGTCACTCAGGTCATCAAAAACCTGCAGGTCAAGATCTCTAACATCCATGTACGCTATGAAGATAATGTCACTAATCCAAACTGTCCTTTGTCATTTGGAGTGTCACTTAAAAACCTCAGTCTTCAGACATCTGATAAGAACTGGAATCCCAGACTTTTGGATGAAAATTCCAGGCTTTTCTTCAAGtTGGTTAAACTAGACAGCTTGTTTGCCTACTGGAATGTCAACTCTTTGCTCTTCTCCAATCACAGTGCAGATGAGGCCTTGGTGAGTCTCCCTTTTATTTTACTGTGTTGTCCCTTGTCTCCACCAGCTTAGATATAGTCAAGCCATTGTCTGTCTTCTTCTGCTTTATTGAGGCTGAACACACAACCTCATTGTGGGCTCACAGAACACAACTTTATCAGGGTTTCTCCCTCAACAGAACAGTTTCAAAGTAACATAGTCCCAATATGAAAGGCCTTTTTCTGAAATCCTTTTAAAGCCTTTGTTATTAAATGATCGCCGTTGAATATTGGAACAAGGCTTCTGCACATTTTTCTGAGATCAATGCCGATTTTATTAACCATTTATTTCATCCACAAGGGCTCTTTCTAGTATAAGCCCAATGTGTAGAATGTTTATAAATGTGGGGTTGTGATGGTTTACTACTG

Function

GO: NA

KEGG:

id description
K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802690.1 True 1177 mRNA 0.43 9 20397583 20400992

Neighbor

gene id symbol gene type direction distance location
LOC120560540 NA coding upstream 1466 20394843 ~ 20396117 (+)
foxb2 foxb2 coding upstream 16092 20353242 ~ 20381491 (+)
LOC120560539 NA coding upstream 69680 20312561 ~ 20327903 (+)
pcsk5b pcsk5 coding upstream 97188 20226320 ~ 20300395 (+)
LOC120561477 NA coding upstream 176953 20191919 ~ 20220630 (+)
stpg2 NA coding downstream 98138 20499130 ~ 20551819 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding downstream 448994 20849986 ~ 21049849 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding downstream 877410 21278402 ~ 21282508 (+)
LOC120561163 lmbrd2 coding downstream 992781 21393773 ~ 21403390 (+)
golm1 golm1 coding downstream 1002971 21403963 ~ 21410730 (+)
G63385 NA non-coding upstream 4952 20392407 ~ 20392631 (+)
G63204 NA non-coding upstream 370417 20026910 ~ 20027166 (+)
G63203 NA non-coding upstream 370828 20025755 ~ 20026755 (+)
G63202 NA non-coding upstream 371835 20024913 ~ 20025748 (+)
G63192 NA non-coding upstream 379171 20018117 ~ 20018412 (+)
G63377 NA non-coding downstream 41162 20442154 ~ 20442952 (+)
LOC120560275 NA non-coding downstream 157348 20558340 ~ 20564445 (+)
G63451 NA non-coding downstream 164676 20565668 ~ 20566142 (+)
G63457 NA non-coding downstream 234597 20635589 ~ 20637358 (+)
G63460 NA non-coding downstream 239766 20640758 ~ 20641102 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 634059 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 948633 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 1315929 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1655184 18737518 ~ 18742399 (+)
acacb acacb other upstream 1712120 18661157 ~ 18685463 (+)
wdr31 wdr31,LOC102796061 other downstream 72659 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 275425 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1187884 21588876 ~ 21599289 (+)
G63905 NA other downstream 2528907 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 3086975 23487967 ~ 23562285 (+)

Expression


Co-expression Network