ube2d4 (LOC104946535,LOC101482088,LOC101172587,LOC101069170,LOC108236573,LOC107393720,LOC103397347,LOC104935329)


Basic Information

Item Value
gene id ube2d4
gene name LOC104946535,LOC101482088,LOC101172587,LOC101069170,LOC108236573,LOC107393720,LOC103397347,LOC104935329
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38662069 ~ 38673892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802708.1
CAAAACCTGTTTGCCTGGAACCAAGAGAGACGAGAGGAGAGACAGCAAAATATCTCGGTTGTTCTGTTGCAAGCGAACGAAAGATCAAGATTTAACACACACTTTGACGGTTAGATTGAACTTGAAACCATAAGCCCAAAGCCTGCTGTATGTCAGACGCGATATCCTGATTATACGTAAAGTGAGATTTGAAAGAACGCGGCCACAGAAGCCAAATTGTATGAGTGAAGTGCTaactgttaacgttagctgacaGGCTACATAGCATAGCCATTGATGCAATGGCGTTGAAAAGAATTCAGAAGGAGCTGTCAGACCTGCAGAGGGACCCGCCTGCTCAGTGCTCCGCTGGACCAGTCGGAGAAGATTTGTTTCATTGGCAGGCGACAATAATGGGTCCGAGTGACAGCCCTTATCAGAGTGGAGTGTTTTTCCTCACCATTCACTTCCCGACAGATTACCCCTTCAAACCTCCCAAAgTTGCATTCACAACAAAAATTTACCACCCTAATATCAACAGCAATGGAAGTATTTGTCTGGATATCCTGAGATCACAGTGGTCACCTGCACTTACAGTATCAAAAGTATTATTGTCCATCTGCTCCCTTCTCTGTGACCCGAACCCGGACGACCCGCTGGTCCCAGAGATCGCCCACACATACAAGGCTGACAGGGAAAGgtacAACAAATCAGCAAGAGAATGGACACACAAGTATGCAATGTGAGGGAGATGAAAATTACAAAtgagaacaaaaaaagaaacgcgTTTGAtttgtaacttaaaaaaaatggcaaatgagcaacagaggaagaagacgacgacaacaacaacaacaaaaaaaagaaaacactagaCAACAGCCCATCTTTTTTGGAGGAGGAAGCGATACGATGAGGTACAGTGCCACCTGGCTTTCCATGTGCTGAGCTGCTCCCATGTGCTGTCCTTCATGACTCGTATTGGATCTGCCGAGCAGGACCTCACGGGCTCCTTAAGGCGCTCCCATGTGGAATACCGGAAACTCTTCACACTCAGACTTTAAGCTGTTACTCCTGCTTTTGTGAATCACTATCATCGCTTTTCATAACGCATCATTTTCACTGTCGATGAGTCATAGCGGTATagcatttagtttttattttaggaGATTTGGCTctcccctttttattttcagaggTACTGTCTGTGTCCCACTGgatgtcttgttgttgttgttgttgttattattattattattattgtatttccaTGTTATTTAGTGGcctttctgtgtttttattttctcgGTATATGTGCAATCGAGGCAGAATGTTCCCTGCTCAACACAAAAATGGTGCAGTGCCATTACCAGCAGCTGATCGGTTGGCGCACGCTGTCTCTCTACACCCCGAAACAATGTGAAAGATGTAAAGAAGGAATCGGTCTCTCTTATCAACCTGTGCGTATTTTTTTTCGAAATTGCGACAGTATTTTGTGGTTTTCTAGGGCAGTGGAGAGCTGCTGTTAGGAGCTAGCTGAGCCTTGCCTCATTGAATATGTTCACATGCACActgtttttccactttttattccgaatatgaaaatattctgaatgtgatacgggtcatgtaaacagcatattccgtttTGGATATTTTGAATAAGACCTTTTATCAGAATAAAGCATTTTTCGATTAAGACGTGTGATTTGCCGGTATAATCTGGGTTTTAGAAGCCTTCTTTGGACGTGTATGCAGCGCATTCAGAATCTGCGTCTCAA

Function

NR:

description
ubiquitin-conjugating enzyme E2 D4

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802708.1 True 1760 mRNA 0.43 7 38662069 38673892

Neighbor

gene id symbol gene type direction distance location
dbnlb dbnl,LOC102783933 coding downstream 4535 38637016 ~ 38657534 (-)
arid5a NA coding downstream 41606 38600352 ~ 38620463 (-)
gins4 gins4 coding downstream 82721 38560362 ~ 38579348 (-)
zgc:77112 NA coding downstream 108892 38549620 ~ 38553177 (-)
polr3d polr3d,LOC102786318 coding downstream 144783 38495608 ~ 38517286 (-)
zgc:153044 LOC104946530 coding upstream 171795 38845687 ~ 38847953 (-)
mn1b mn1,LOC102781903 coding upstream 692785 39366677 ~ 39394822 (-)
LOC120560407 ttc28 coding upstream 776041 39449933 ~ 39841426 (-)
LOC120560309 hectd4 coding upstream 1212711 39886603 ~ 39997858 (-)
LOC120559991 rph3a,LOC101477332,LOC102779512,LOC104921713 coding upstream 1367478 40041370 ~ 40131231 (-)
G67954 NA non-coding downstream 6095 38633760 ~ 38655974 (-)
G67926 NA non-coding downstream 215283 38445979 ~ 38446786 (-)
G67920 NA non-coding downstream 247533 38414205 ~ 38414536 (-)
G67897 NA non-coding downstream 262977 38300289 ~ 38399092 (-)
G67911 NA non-coding downstream 276008 38362050 ~ 38386061 (-)
G67964 NA non-coding upstream 44346 38718238 ~ 38718758 (-)
G67969 NA non-coding upstream 108947 38782839 ~ 38785317 (-)
G67972 NA non-coding upstream 151399 38825291 ~ 38825971 (-)
G67976 NA non-coding upstream 152778 38826670 ~ 38917447 (-)
G67986 NA non-coding upstream 291861 38965753 ~ 38966009 (-)
LOC120560036 NA other downstream 317273 38336088 ~ 38344796 (-)
G67577 NA other downstream 1107302 37535859 ~ 37554767 (-)
G67523 NA other downstream 1316986 37344461 ~ 37345083 (-)
adrb3a adgra2,LOC104963277 other downstream 1335668 37229742 ~ 37326401 (-)
G67483 pdlim2,LOC104963286,LOC103470528,LOC100702294 other downstream 1510423 37098792 ~ 37151646 (-)
LOC120560826 pitpnb,LOC104952320 other upstream 736347 39410239 ~ 39461568 (-)
G68717 NA other upstream 1261480 39935372 ~ 39935846 (-)
LOC120560061 NA other upstream 1326114 40000006 ~ 40026743 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 1639477 40313369 ~ 40330695 (-)
G68952 NA other upstream 2250182 40924074 ~ 40950607 (-)

Expression


Co-expression Network