LOC120560335 (LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076)


Basic Information

Item Value
gene id LOC120560335
gene name LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25019069 ~ 25023688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802720.1
TAAATAGAAGAAGAGTTCATTCAGCCATTACATTCTCACTTACAGCCAGGTCGAAGCCGCTAGTGGTGGAGGACAGGTCATTAGCAACCCGACAAAATGTTAACCGTGAGAGTTGCAGCAGCTTTGGCCAGGACCCTGCCCAGAAGGGCTGGATTTGTGTCCAAGGCTGTACCGGCCGCCTGCGTTGGGGTCAaccacctccacacacacagaccatgGCTGCAGAAGATCGGCACAGCCGAGGTGTCTTCAATCCTGGAGGAGAAGATCTTGGGAGCTGACACCTCTGCCGACCTGGAGGAGACAGGACGTGTGCTGTCCATTGGTGATGGTATTGCCAGAGTGTACGGGCTGAGGAATGTCCAGGCAGAAGAGATGGTGGAATTTTCTTCTGGACTGAAGGGCATGTCTCTGAACTTGGAGCCCGACAACGTTGGTGTTGTGGTGTTCGGTAACGACAAGCTGATCAAGGAGGGTGACATTGTGAAGAGGACTGGTGCCATTGTGGATGTCCCTGTTGGTGAGGAGCTGCTCGGCCGCGTGGTGGACGCTCTGGGAAATGCCATCGATGGAAAGGGTCCTCTTGGCTCCAGCATCCGTAGGCGTGTGGGTCTGAAGGCTCCTGGTATCATTCCCCGTATCTCTGTGAGGGAACCCATGCAGACTGGAATCAAGGCTGTGGACAGCCTGGTGCCCATTGGCAGAGGCCAGCGTGAGCTGATCATTGGTGACAGGCAGACCGGCAAAACTGCCATTGCCATTGACACAATCATCAACCAGAAGCGCTTCAATGAGGGAACTGACGAGAAGAAGAAGCTGTACTGCATCTACGTCGCCATCGGGCAGAAGAGATCCACTGTTGCTCAGCTGGTGAAGAGGCTGACTGATGCTGATGCCATGAAGTATACCATCGTGGTCTCTGCCACTGCCTCTGATGCTGCTCCTCTGCAGTACCTGGCCCCATACTCTGGCTGCTCCATGGGAGAGTACTTCAGAGACAACGGCAAGCACGCCCTGATCATCTATGATGATCTGTCCAAGCAGGCTGTTGCCTACCGTCAGATGTCCCTGCTGCTGCGTCGTCCTCCTGGTCGTGAGGCTTACCCCGGTGATGTGTTCTACCTGCACTCCCGTCTGCTGGAGAGAGCTGCCAAGATGAACGACAACTTCGGCGGCGGCTCCCTCACCGCCCTGCCCGTCATCGAGACCCAGGCCGGTGATGTGTCTGCCTACATCCCCACCAACGTCATCTCCATCACAGACGGACAGATCTTCTTGGAGACTGAGCTGTTTTACAAGGGTATCCGCCCAGCTATCAACGTGGGTCTGTCTGTGTCCAGAGTAGGCTCTGCTGCCCAGACCAAAGCCATGAAGCAGGTGGCCGGTACCATGAAGCTGGAGCTGGCTCAGTACCGTGAGGTGGCTGCCTTCGCCCAGTTCGGCTCTGACCTGGACGCTGCCACCCAGCAGCTTCTTAACAGGGGTGTCAGGCTCACTGAACTGCTTAAACAGGGACAGTATTGCCCCATGGCCATTGAGGAGCAGGTAACAGTCATCTATGCTGGTGTCAGGGGTCACTTGGACAAGATGGAGCCCAGCAAAATCACAAAGTTCGAGAAGGCTTTCCTGCAGCACGTCCTCAGCCAGCACCAGGACCTGCTTGCCGCAATCAGaGCTGAAGGCCATATCTCAGAGGCATCAGATGCTAAACTGAAGCAGATTGTACTGAGCTTCCTGTCTAGTTTTGAGTAATGGATAGCACTTCTCTTGATCTTCAGTGAGCTACCTGTCTGTGTCCCCATTATGCTTATACATGTGAACACACTGAAGGCCAAAACCTCCATGTACAGATTTCTCCAAATAAAATTTTACAACCCTAATGAGCTGTAAAATTCTTCTGATTGTGCGCTTAACTACCGTAAGTTAAGTTTGTGAGCTGTGAGCAGATTTCACCAGTGGCAGAAAAGTAATACAAACAATACTTTTCTTTAAACGCATCTAATGTGTAATTTGAGTATTTTAGTGTACCAAAATATAAAGGTAACGTGCATAACGGGCCGCATACCACAGTCTTTAATTCTGTTTACTGTAACAGTTGTTCATAAGCGCATTATATTTAAGAGGGCAAATGAGTGTTGAGAAGTGTCTGTTTTGCTCCTCACTGTTTTCAGAGGATGGAAGGACTGTAGGCCCAGTTTCTCAACTGTGGGTGAACTGTTTGATACTATGGTAATAAATTCAGTGACACTGTCACACATCAAATCCA

Function

NR:

description
PREDICTED: ATP synthase subunit alpha, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802720.1 True 2266 mRNA 0.51 11 25019069 25023688

Neighbor

gene id symbol gene type direction distance location
loxhd1b LOC108233688,LOC105931393,LOC106513687,LOC106924721 coding upstream 18605 24974336 ~ 25000464 (+)
ptger4a LOC103360740,LOC104967800 coding upstream 56591 24958162 ~ 24962478 (+)
mrps27 mrps27,LOC106943511 coding upstream 70542 24935660 ~ 24948527 (+)
znf366 znf366 coding upstream 86475 24924529 ~ 24932594 (+)
smyd1b smyd1,LOC107394125,LOC100708974 coding upstream 117970 24895062 ~ 24901099 (+)
ostf1 ostf1 coding downstream 56619 25080307 ~ 25088646 (+)
atxn2 atxn2 coding downstream 84269 25107957 ~ 25139788 (+)
hsd17b4 hsd17b4 coding downstream 209527 25233215 ~ 25259169 (+)
sema6a sema6a,LOC102790561 coding downstream 312336 25336024 ~ 25445140 (+)
cdo1 cdo1,LOC102791980 coding downstream 544016 25567704 ~ 25573107 (+)
G64287 NA non-coding upstream 126552 24876562 ~ 24892517 (+)
G64279 NA non-coding upstream 156339 24860249 ~ 24862730 (+)
LOC120560123 NA non-coding upstream 500196 24514819 ~ 24518873 (+)
G64251 NA non-coding upstream 656160 24362475 ~ 24362909 (+)
G64235 NA non-coding upstream 784581 24234274 ~ 24234488 (+)
LOC120560056 NA non-coding downstream 11021 25034709 ~ 25040898 (+)
G64392 NA non-coding downstream 186236 25209924 ~ 25210170 (+)
G64450 NA non-coding downstream 236028 25259716 ~ 25302920 (+)
G64489 NA non-coding downstream 482476 25506164 ~ 25506568 (+)
LOC120560635 NA non-coding downstream 524335 25548023 ~ 25552264 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 181621 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 196003 24821314 ~ 24823066 (+)
G64108 NA other upstream 1325778 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1456784 23487967 ~ 23562285 (+)
G63905 NA other upstream 2088864 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 661276 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 890591 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 902399 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 1335432 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 1389181 26412869 ~ 26414597 (+)

Expression


Co-expression Network