limk2 (limk2)


Basic Information

Item Value
gene id limk2
gene name limk2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19207779 ~ 19226925 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802722.1
GCTGAAGTTGAGCCCTTCCGCCCTCCGTACAGGAATTTGAAGACTGCATTACGTCAGTTATCCTGCCAGCGGCAAGAAAGCAGCCCAGTCCGGGAGTgtggtcacttttttttttttactactttctGTGAAGAATTAAAGggatttgtgcttttttttcctgAGGAATTCAGAGTTGGGAGTTCTGTCCGTTCTGGGTGAACGACGGGGAGGAATGAAACTTGGAAGCGGCGCATCGCAGCTCTTCTGCTCCAGTATGAAGCGTTTGTGAAACGATTTGAAAATCGACGACACTCAGAAAGTAGATGGAGGAAACAGAAGgtaCAGATCATTGTTACTGTGCGGGATGTGGAGGAGAAATTCAAGACTCGTTTCACATGAAAGTCCTCCAGGACACCTGGCACAACGCCTGCTTTCAGTGTTCCGTGTGCTGTGACCACTTGACTAACTGGTACTATGAGAAGGAAGGCAAGCTGTACTGTCGCATACACTactgggagaagtttggagagcTCTGTCATGGCTGCTCTCTGCTCATGACTGGACCTGCCATGGTGGCCGGAGAACACAAGTATCACCCAGAGTGCTTTGTGTGTCTGAGCTGCAAGGTGGTGCTCGAGGACAGGGATACCTACGCCTTAGTCGAACGGTCCAAACTCTACTGTGGAAAGTGCTACAAACAGGTTGTTCTTACACCCATGTTGGAAAAGCGCTCCCACGACTCGGTCCTAGACTCCCTACCCCACACAGTGACTCTCATCTCGATGCCTTCTGCAGCCAACGGCAAGAGGGGCTTTTCCGTCACAGTGTTGAGGGACGTCAACGGCTCAGCAAGTGTTCAAGTTAAAGAAGTCAGGGGGATGCTTATTAGTCCAGAGGTCCGAAATGCCATCCATGTTGGGGACAGGATCCTGGAGATTAATGGCCTTCCTGTCGGGACATTGATGCAGGAGGAGgtGGATGATCTCGTTCACCGCACCAGTCAAACGCTGCAGCTGCTGATAGAGTACGACCCAATCAGGCAGCGTTTAGACCGGCTCAGGCTGGGATCACCACGAACCCGGCTGGGAGTCCCAGCCACCTCCCGCATGCGTCTGTCCTCACCTTCTGACGCGGTCCTGGAGAGAACCGATGATGTTGATGACAGCACACTAAAAAGGAGGTCTTTGAGGCGCAGTAACAGCATATGTAAGTCACCCGGGCCAAATTCCCCTAAAGAGATGCCTTTTATTTCACAACACATCGGCCGCTCTGAATCCTTGAGATCCTCCAATAGCTGCTCTCATCGTATCTTCCGGCCATGTGACCTCATACACGGAGAGATCTTAGGAAAAGGCTTCTTCGGACAGGCTATCAAGGTGACTCATAAAGCCACAGGAGAGGTGATGGTGATGAAGGAGCTGATCCGTTGTGATGAAGAGACCCAGAAGACTTTCCTAAAGGAGGTCAAAGTAATGCGATGCCTCGAACATCCCCACGTTTTAAAGTTCATTGGTGTGCTATACAAGGACAAGAGGCTAAATCTGATAACGGAGTATATCGAGGGAGGCACGCTGAAGGATTTTATCAGAGACACGGATCAGTTTCCATGGGAGCAAAGGGTGAGCTATGCAAAGAGCATCGCTTCTGGCATGGCCTACCTTCACTCAATGAGCATCATCCACAGAGACCTCAATTCTCACAACTGCCTGGTTAAACTGGACAACACTGTGGTCGTGGCTGACTTTGGACTGTCCCGACTAATAGTCGAGGACAAAGTGAAGCCTCCATCTGATAAACCAACAACTAAGAAAAGAGTGTTCAGACGCATTGACCGAAAGAAGCGCTACACTGTTGTGGGAAACCCATACTGGATGGCTCCAGAGATGCTAAATGGTAAACGCTATGATGAGAAGGTGGACATTTTCTCCTTTGGAATTGTACTCTGTGAGATCATTGGAAAAGTCAGTGCAGACCCTGAGTGCCTCCCCAGGACTTTGGACTTTGGCCTGAATGTTGGCAAGTTTGTGGAGAAGTTCCTCCCTGAGGACTGTCCACCAGCTTTCTTTCCATTGGCTGTGGCCTGCTGTGACGTCACACCAGACAACCGccCACCTTTCCAGGAGCTGGAGGACTGGTTTAAGGCTCTGTCCCTCAACCAGGAGCTGGGGATCCCCCTGCCAGCCGAACTGGATGAACTGCATCAGAGAGTGAGTCGACTCCACTGGCCTAAAGGCGGCTCCCCATCCCAGAGCACGGATCAGTCATCAACCCCAACAGCAGCGTCTCCAGACTCTTCCAGCATGACAGACAGTGGCACCTAGGTCCTGTGCCTCTTTTCTTTGACCCCTCTGAACTGCTGCAGTAATACTGGGGATGAGAAAAAGAGGGAAATTGCGTTAAACCCGAGCCATATTAAAACTGGATATCCTGAGGTAGCTGGACCAATCTCCCTGTGTGGGACCTTTACTCTGAGAGTGCCAGTGAACTGCAATGTGGGTGGAAAGACACATTTCAAAAAGACAAATGTtagatacaaaaacattttttacccTACTAAGCCCCCACTCAGCACACGCAGGGTTGTACTAATGTTTACTGTGTATATAGACAATATGCAGCTTTCTTTGGTCCTCTCCCCCAACAAAAGATGAACCTCTTAATAAGGTGGAAGACCTCAATGAGTAAGATGGGacagcatttttgtttttcattctttGAAGTTGTTGTTTGCTATGTGTGGTATGCACAGATCAAATCTAAACCCCCGGAGGACTCGCTTCACTTCACTGCAGcagcaaagaaaacaaagatGCTCCACAGTCTGAGTGTGGCTGATTGACAGGTCCAGGTAAACAGGGCAGggcttggaaaaaaaactttttagcAGCAGTGGAAgcaaaacgcacacacacacactgaccccaAATGGCACAAGTAGGCAAAGGAGTGTGAAGTTTTTCTTCTAAGCACCACTAATCTAGTTTTTGACGAGATGGTTACATTGTATGGTTCTGTACTTTGTAGTCTAACGATTAATTAATTTCTTAGAATGATGAATGAACACTATTTAGATTGTTGCCACACTGACATTTTGTTCAAAGTTTCTATCAAACACCTAATGCCTATTTTattcaaaaaaaaacagggcagGGCTCTTGTGTAAAGTAGGGCTGTTATTAGTAATTCTCAGACATAATCATGCAACAGTTGCCAATAAAACATTGCTTTGTACAGAAgatctggattttttttcttaagcaATGTATGTACATATGCCTCTAATTGGATGTCATTTTCTAATGGGAATTCTAGATTTGTGGATTTTTAGACATTTCATCAACGATAGacgtttttgccttttttctaTCATCATGCAAGGTACTGATGACCAGTTGTAACCACTAGTATTTATATCACTGtagtgtttaataaataaacctTCTTAAAGTTGC

Function

symbol description
limk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axial vasculature; cephalic musculature; digestive system; mid cerebral vein; and nervous system. Orthologous to human LIMK2 (LIM domain kinase 2).

NR:

description
PREDICTED: LIM domain kinase 2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05744 LIMK2; LIM domain kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802722.1 True 3434 mRNA 0.47 16 19207779 19226925

Neighbor

gene id symbol gene type direction distance location
cmklr1 NA coding upstream 85304 19120145 ~ 19122475 (+)
sart3 sart3,LOC102781133 coding upstream 108175 19087797 ~ 19099604 (+)
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding upstream 133437 19029407 ~ 19074342 (+)
ssh1a ssh1 coding upstream 184898 19002296 ~ 19022881 (+)
svopa svop coding upstream 214800 18985376 ~ 18992979 (+)
tctn2 tctn2 coding downstream 24251 19251176 ~ 19255928 (+)
atp6v0a2b atp6v0a2 coding downstream 29861 19256786 ~ 19269028 (+)
dnah10 dnah10 coding downstream 42611 19269536 ~ 19296674 (+)
emid1 emid1 coding downstream 71630 19298555 ~ 19357146 (+)
ewsr1b ewsr1,LOC102785556 coding downstream 137081 19364006 ~ 19372609 (+)
LOC120560789 NA non-coding upstream 54195 19151533 ~ 19153584 (+)
G62836 NA non-coding upstream 120917 19084934 ~ 19086862 (+)
G62796 NA non-coding upstream 225156 18966083 ~ 18982623 (+)
G62755 NA non-coding upstream 342972 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 434671 18772755 ~ 18773108 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 322485 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 328458 19555383 ~ 19562350 (+)
G63015 LOC107394186,LOC104941583 non-coding downstream 348636 19575561 ~ 19633642 (+)
G63016 NA non-coding downstream 355047 19581972 ~ 19584473 (+)
G63029 NA non-coding downstream 429307 19656232 ~ 19656496 (+)
tmem119a LOC103353570,LOC104946818 other upstream 126125 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 465380 18737518 ~ 18742399 (+)
acacb acacb other upstream 522316 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 733048 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 788189 18407348 ~ 18419590 (+)
rasl10a rasl10a other downstream 203476 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 532671 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1174022 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1246726 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 1449492 20676417 ~ 20677916 (+)

Expression


Co-expression Network