slc4a5a (slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261)


Basic Information

Item Value
gene id slc4a5a
gene name slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8861970 ~ 8907724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802727.1
gagacagagcaaagCCAgtcagacagacggacagagacAAATAGAAAGGAGTTAGACCTCTTTGCTGAGTTTCTACTATTCAATAGTTTGTTGGAGCTCCACTGGCATGTTTTAATTGATGCGACCCTACGAGCAGCAAAGGCCTTTTTCTGCTTTCGCTCATTCCAGCTGACTAACTAATCCAGgatggaccatggagatCGAGGGATGGGCGTCTCTAATCTTCGctatgaggaagaggaggACCATCAGTCCATCTACATTGGTGTCCCAGTGCCTCGAGGATATCGTCGCAAACGCAGGCGAAGGCGCTCCAGTCGGGAGGCTGCTGACATGAACAGGGACCGACGCTATAGCCAGAACAGACACCAAGGGCAAAACCGCTACCGAGACATAGAGGAAGGACTTGATTCAAACGAGCAGAGTCTCCAAGACATCAACCACACAATGTCTCCAGCGGCAGAGCGGCTACGTTACATCCTGAATGAAGATGAGGACATGCCCACGCCTACGCTCTTCACTGAGATGGACACTCTACAGCGAGAAGGAGACGAGCTGGAGTGGAAGGAGTCTGCAAGGTGGGTGAAGTTCGAAGAGAaggtggaggagggaggagaaaggTGGAGTAAACCACACGTGTCCACGCTGTCTCTGCATAGTCTTTTTGAGCTCAGGACATGCCTCCAGACGGGAACAGTGCTGCTGGACTTGGAAGGCTACTCACTGCCTCAGATAATTGATGACATCATCGAGAGACAGATAGAGGAAGGAATGTTATCTCCTGAGCTTAAAGAGAAGATCAGTTTTGTCCTGCTGAGGAAACATCGACACCAGACCAAGAAGCCAATCCACCGCTCACTAGCCGACATCGGCAAGTCCACCTCTTCTACCAATCGTAATGTCGGGTCCCGAGGTGTTCCGGGGTCAATGGCCAACTTTAACCGCTCCACAGAGGACCTCCATTTGAAACAGCAATCTGCCAACTATGGTCGCCTGCGTCACGCCCAGAGTAGGAGTATGAATGATATTGCAGATACTCCCAGCACAGACCAGCTTAAAAATAAATTCATGAAGAAAATCCCCAGAGATGCAGAGGCATCCAACGTCTTGGTGGGTGAAGTGGATTTCCTTAACAAACCCTTTGTAGCCTTTGTCCGCCTGGCCCAGGCTACAACACTAGGAGGTCTCACTGAGGTCCCTGTTCCCACCAGATTCCTCTTCATTCTCTTGGGACCCCAAGGAAAGGCCAAGTCGTATAATGAGATCGGCCGAGCCATAGCAACCCTAATGGTGGATGATCTCTTCAGCGATGTAGCCTACAAGGCCAGAGATCGTGACGACCTCATCGCAGGCATAGATGAGTTTTTGGATGAGGTGATTGTGCTGCCGCCTGGAGAATGGGATCCCAAAATCCGCATTGAGCCGCCCAAGAAAGTCACCTCAGCTGATCAAAGGAAGTCAGTGTTTTCCTTAAATGAGCTGGGCCAGATGAACGGtacagctggaggaggaggaggcctgGCTGAGGACGAGGAGATGCCAGTGCAGCATGAGCTTGGAGAGGAGCTGGCATTCACTGGACGCTTCTGTGGTGGTCTGTACCTGGACATAAAGCGAAAATTGCCATGGCTGCCTAGTGATATCTATGAGGGTTTCCACATTCAGTCCATCTCCGCAGTGCTATTCATCTACTTGGGCTGCATCACCAACGCCATCACCTTCGGTGGTCTACTGGGGGACGCTACTGATAACTACCAGGGTGTAATGGAGAGTTTCCTGGGTACGGCTCTGGCTGGCTCGGTCTTCTGTCTCTTCAGCGGTCAGCCCCTCATCATCCTCAGCTCCACTGGACCCATCCTCATCTTTGAAAAGCTCCTGTTTGAATTCAGCAAAAACAACGGCATAGATTACATGGAGCTGCGTCTGTGGATCGGCATGCACTCCTGCCTGCAGTGTTTCCTCCTGGTAGCTACAGATGCCAGTTACATCATTAAATACATGACACGCTTCACTGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCTGATGCCATCAAGAAGATGGTGGGCTCATTCAAGTATTACCCCATCAACACTGACTTTAAGCCCGATTACGTCACCACCTACAAGTGCGAATGCCTGGCTCCAGACCTGATGACTGCAATCATCTTCAATGATTTAGCTCCAATGCCAGATAACAGCTCTAGTGTCTCTGGGATAAATGTGACAGGTCTGGACTGGAGCCAGCTGAGCAAAAAGGAGTGTCTGAAGTACGGAGGCTCTCTGGTGGGGAAGTCCTGCAAGTTCGTCCCTGATCTGGCCCTCATGTCCTTCATCCTCTTCTTCGGCACCTATTCCATGACTGTAACCCTCAAGAAGTTCAAGTTCAGCCGCTACTTCCCTACTAAGTTGAGGAAACTCATCAGTGACTTCTCTATCTTCATGTCCATCATGACGTTTGTGGGGCTTGACATGTTGATGGGACTCAAAACTCCCAAGTTAATCGTCCCCACAGAATTTAAGCCAACTCGGCCGGATCGTGGTTGGCTGGTGATGCCATTTGGTAAGAACCCGTGGTGGATTTACCTGGCCAGCGCTGTCCCTGCCCTCCTCGTCACTATCCTCATTTTCATGGACCAGCAGATCAGCGCCGTCATTGTTAACCGCAAGGAGAACAAACTCAAGAAAGGCTGTGGCTACCACCTGGACCTGTTCTGGGTGGGCGTCCTGATGGCCGCCTGCTCCTTCATGGGCCTACCCTGGTACGTCGCTGCCACCGTCATCTCCATTGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCAAGCGCTCCCGGAGAGCAGCCTCAGTTCCTCGGGGTCAGAGAACAAAGAATGACAGGCATTTTGGTGTTTGCCCTCACCGGAGTCTCCATCTTCCTCGCTCCAATACTTAAGTACATCCCCATGCCTGTGCTGTATGGTGTCTTCCTCTACATGGGCGTAGCTTCCCTGAGTGGAATCCAGttctgggacaggattaAGTTGTACATGATGCCGTCCAAGCACCAGCCCGACTACGCCTACCTCCGTCATGTTCCTCTGAGGAAGGTACACCTGTTCACGCTGGTCCAGATCGCATGTCTGGCTGTGCTCTGGACCCTCAAATCCACCTTCTTGGCCATCATCTTCCCCGTTATGATTCTGGGTCTGATGGTCGTCCGAAAGATGCTGGACATGGTCTTCTCCCAGCACGACCTGGCCTGGATGGACGACCTCCTTcctgagaaagagaagaagaaggtcGACGATAAAAAGAAGGGGAAGGAGAAGGAAAAAgacaaggagaaagagaaggagaagaagaagaagcccaAACCAGACGACAGCGATGAGGAGGACAAGTGGCGCGCCTACTCCAACCACTCCCCCAGCGTAGATTCAGATTTGGATCGCAGCATCACCCTACACCTGAAGATCTCGTGCCCATCGTCTCCGGCCATGCCTATGGGCCGAGGGATGGCCTGCCCTGTGCCCCAGGTCAAGATCGAGATGGAGTCGGACTACGACTCGGACATCGACCACCACCACCCTCGGGACATGAGCAGCGAGACCACGTTATGAAGCTGAGACTCGGAACAGTCTGACCCGCGGACAGTACAAGGGGGCACAGACTGATGGCTTTGAGCAAACTGACACCTTAACAGTCTGGCTGAAATGGGACTGATCCAATCAATGCGGTTGGGGAGGTTGAAGTTTTAGCTTCATGTGCTTTTTATATTGGTGCAGTCCTGACAAATTCTGCATATatgaaatacaaatgtataatACTTGTTTGATGTAAATGGCCATAATAACAGAggagatatttatatgtatGAGATGTATAGGATTATATATTTGATGTGAAAATATTTATCTTTATACTAACATATAACAAGCTATATATTGATATTGTACTATTAATGTAATTACTCCAAATCCAAACTAATCTTGAAATCAGTACAATATCAAAACTTATTGTACAGTAATTTTACATCCGCCTGTGTGTACAGACTTTGATTTTGAGCCAGGAAAAGAGAAAACTAGCACTATTTTAGTAACAGAACTATTAACCATGAGGTTGTAAAGTCTACGGTCTTCTACTATGTTAGCCTTTGCATATTTGTGTTTTGGTGTTTGTTTGACTATGTTGTAGTATGCCTCTGCTCCCAGAGAACCGGCTCTCCTTTTACCCGTTTCCCTCCAGTTCAACACTCCATATTGGCACATTAACCTGGAACAAAAAGAAACAACCAAAAAGTCTTGATGTTGCTGAAAAAGAACGATTAATTATGCAAGATGTAGCTTAcacgtttttatatatgtgtttttactCACAAAGTCTGTATCGGAACGTAATTAACTTTCACCACAACACTTCATGCATATGACAATAATAAGAAATTGACAGATATACAGTAATTTATGTAATTAAAATGCCATTACTCCAAA
>XM_039802728.1
gagacagagcaaagCCAgtcagacagacggacagagacAAATAGAAAGGAGTTAGACCTCTTTGCTGAGTTTCTACTATTCAATAGTTTGTTGGAGCTCCACTGGCATGTTTTAATTGATGCGACCCTACGAGCAGCAAAGGCCTTTTTCTGCTTTCGCTCATTCCAGCTGACTAACTAATCCAGgatggaccatggagatCGAGGGATGGGCGTCTCTAATCTTCGctatgaggaagaggaggACCATCAGTCCATCTACATTGGTGTCCCAGTGCCTCGAGGATATCGTCGCAAACGCAGGCGAAGGCGCTCCAGTCGGGAGGCTGCTGACATGAACAGGGACCGACGCTATAGCCAGAACAGACACCAAGGGCAAAACCGCTACCGAGACATAGAGGAAGGACTTGATTCAAACGAGCAGAGTCTCCAAGACATCAACCACACAATGTCTCCAGCGGCAGAGCGGCTACGTTACATCCTGAATGAAGATGAGGACATGCCCACGCCTACGCTCTTCACTGAGATGGACACTCTACAGCGAGAAGGAGACGAGCTGGAGTGGAAGGAGTCTGCAAGGTGGGTGAAGTTCGAAGAGAaggtggaggagggaggagaaaggTGGAGTAAACCACACGTGTCCACGCTGTCTCTGCATAGTCTTTTTGAGCTCAGGACATGCCTCCAGACGGGAACAGTGCTGCTGGACTTGGAAGGCTACTCACTGCCTCAGATAATTGATGACATCATCGAGAGACAGATAGAGGAAGGAATGTTATCTCCTGAGCTTAAAGAGAAGATCAGTTTTGTCCTGCTGAGGAAACATCGACACCAGACCAAGAAGCCAATCCACCGCTCACTAGCCGACATCGGCAAGTCCACCTCTTCTACCAATCGTAATGTCGGGTCCCGAGGTGTTCCGGGGTCAATGGCCAACTTTAACCGCTCCACAGAGGACCTCCATTTGAAACAGCAATCTGCCAACTATGGTCGCCTGCGTCACGCCCAGAGTAGGAGTATGAATGATATTGCAGATACTCCCAGCACAGACCAGCTTAAAAATAAATTCATGAAGAAAATCCCCAGAGATGCAGAGGCATCCAACGTCTTGGTGGGTGAAGTGGATTTCCTTAACAAACCCTTTGTAGCCTTTGTCCGCCTGGCCCAGGCTACAACACTAGGAGGTCTCACTGAGGTCCCTGTTCCCACCAGATTCCTCTTCATTCTCTTGGGACCCCAAGGAAAGGCCAAGTCGTATAATGAGATCGGCCGAGCCATAGCAACCCTAATGGTGGATGATCTCTTCAGCGATGTAGCCTACAAGGCCAGAGATCGTGACGACCTCATCGCAGGCATAGATGAGTTTTTGGATGAGGTGATTGTGCTGCCGCCTGGAGAATGGGATCCCAAAATCCGCATTGAGCCGCCCAAGAAAGTCACCTCAGCTGATCAAAGGAAGTCAGTGTTTTCCTTAAATGAGCTGGGCCAGATGAACGGtacagctggaggaggaggaggcctgGCTGAGGACGAGGAGATGCCAGTGCAGCATGAGCTTGGAGAGGAGCTGGCATTCACTGGACGCTTCTGTGGTGGTCTGTACCTGGACATAAAGCGAAAATTGCCATGGCTGCCTAGTGATATCTATGAGGGTTTCCACATTCAGTCCATCTCCGCAGTGCTATTCATCTACTTGGGCTGCATCACCAACGCCATCACCTTCGGTGGTCTACTGGGGGACGCTACTGATAACTACCAGGGTGTAATGGAGAGTTTCCTGGGTACGGCTCTGGCTGGCTCGGTCTTCTGTCTCTTCAGCGGTCAGCCCCTCATCATCCTCAGCTCCACTGGACCCATCCTCATCTTTGAAAAGCTCCTGTTTGAATTCAGCAAAAACAACGGCATAGATTACATGGAGCTGCGTCTGTGGATCGGCATGCACTCCTGCCTGCAGTGTTTCCTCCTGGTAGCTACAGATGCCAGTTACATCATTAAATACATGACACGCTTCACTGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCTGATGCCATCAAGAAGATGGTGGGCTCATTCAAGTATTACCCCATCAACACTGACTTTAAGCCCGATTACGTCACCACCTACAAGTGCGAATGCCTGGCTCCAGACCTGACTCCAATGCCAGATAACAGCTCTAGTGTCTCTGGGATAAATGTGACAGGTCTGGACTGGAGCCAGCTGAGCAAAAAGGAGTGTCTGAAGTACGGAGGCTCTCTGGTGGGGAAGTCCTGCAAGTTCGTCCCTGATCTGGCCCTCATGTCCTTCATCCTCTTCTTCGGCACCTATTCCATGACTGTAACCCTCAAGAAGTTCAAGTTCAGCCGCTACTTCCCTACTAAGTTGAGGAAACTCATCAGTGACTTCTCTATCTTCATGTCCATCATGACGTTTGTGGGGCTTGACATGTTGATGGGACTCAAAACTCCCAAGTTAATCGTCCCCACAGAATTTAAGCCAACTCGGCCGGATCGTGGTTGGCTGGTGATGCCATTTGGTAAGAACCCGTGGTGGATTTACCTGGCCAGCGCTGTCCCTGCCCTCCTCGTCACTATCCTCATTTTCATGGACCAGCAGATCAGCGCCGTCATTGTTAACCGCAAGGAGAACAAACTCAAGAAAGGCTGTGGCTACCACCTGGACCTGTTCTGGGTGGGCGTCCTGATGGCCGCCTGCTCCTTCATGGGCCTACCCTGGTACGTCGCTGCCACCGTCATCTCCATTGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCAAGCGCTCCCGGAGAGCAGCCTCAGTTCCTCGGGGTCAGAGAACAAAGAATGACAGGCATTTTGGTGTTTGCCCTCACCGGAGTCTCCATCTTCCTCGCTCCAATACTTAAGTACATCCCCATGCCTGTGCTGTATGGTGTCTTCCTCTACATGGGCGTAGCTTCCCTGAGTGGAATCCAGttctgggacaggattaAGTTGTACATGATGCCGTCCAAGCACCAGCCCGACTACGCCTACCTCCGTCATGTTCCTCTGAGGAAGGTACACCTGTTCACGCTGGTCCAGATCGCATGTCTGGCTGTGCTCTGGACCCTCAAATCCACCTTCTTGGCCATCATCTTCCCCGTTATGATTCTGGGTCTGATGGTCGTCCGAAAGATGCTGGACATGGTCTTCTCCCAGCACGACCTGGCCTGGATGGACGACCTCCTTcctgagaaagagaagaagaaggtcGACGATAAAAAGAAGGGGAAGGAGAAGGAAAAAgacaaggagaaagagaaggagaagaagaagaagcccaAACCAGACGACAGCGATGAGGAGGACAAGTGGCGCGCCTACTCCAACCACTCCCCCAGCGTAGATTCAGATTTGGATCGCAGCATCACCCTACACCTGAAGATCTCGTGCCCATCGTCTCCGGCCATGCCTATGGGCCGAGGGATGGCCTGCCCTGTGCCCCAGGTCAAGATCGAGATGGAGTCGGACTACGACTCGGACATCGACCACCACCACCCTCGGGACATGAGCAGCGAGACCACGTTATGAAGCTGAGACTCGGAACAGTCTGACCCGCGGACAGTACAAGGGGGCACAGACTGATGGCTTTGAGCAAACTGACACCTTAACAGTCTGGCTGAAATGGGACTGATCCAATCAATGCGGTTGGGGAGGTTGAAGTTTTAGCTTCATGTGCTTTTTATATTGGTGCAGTCCTGACAAATTCTGCATATatgaaatacaaatgtataatACTTGTTTGATGTAAATGGCCATAATAACAGAggagatatttatatgtatGAGATGTATAGGATTATATATTTGATGTGAAAATATTTATCTTTATACTAACATATAACAAGCTATATATTGATATTGTACTATTAATGTAATTACTCCAAATCCAAACTAATCTTGAAATCAGTACAATATCAAAACTTATTGTACAGTAATTTTACATCCGCCTGTGTGTACAGACTTTGATTTTGAGCCAGGAAAAGAGAAAACTAGCACTATTTTAGTAACAGAACTATTAACCATGAGGTTGTAAAGTCTACGGTCTTCTACTATGTTAGCCTTTGCATATTTGTGTTTTGGTGTTTGTTTGACTATGTTGTAGTATGCCTCTGCTCCCAGAGAACCGGCTCTCCTTTTACCCGTTTCCCTCCAGTTCAACACTCCATATTGGCACATTAACCTGGAACAAAAAGAAACAACCAAAAAGTCTTGATGTTGCTGAAAAAGAACGATTAATTATGCAAGATGTAGCTTAcacgtttttatatatgtgtttttactCACAAAGTCTGTATCGGAACGTAATTAACTTTCACCACAACACTTCATGCATATGACAATAATAAGAAATTGACAGATATACAGTAATTTATGTAATTAAAATGCCATTACTCCAAA

Function

symbol description
slc4a5 Predicted to enable sodium:bicarbonate symporter activity. Predicted to be involved in several processes, including bicarbonate transport; regulation of intracellular pH; and renal system process. Predicted to act upstream of or within several processes, including cerebrospinal fluid secretion; mitochondrion distribution; and retina development in camera-type eye. Part of apical plasma membrane.

NR:

description
PREDICTED: electrogenic sodium bicarbonate cotransporter 4-like isoform X2

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802727.1 True 4482 mRNA 0.49 26 8861970 8907724
XM_039802728.1 False 4455 mRNA 0.49 26 8861970 8907724

Neighbor

gene id symbol gene type direction distance location
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding upstream 24997 8810554 ~ 8836973 (+)
LOC120560486 LOC107690107 coding upstream 379792 8465171 ~ 8482178 (+)
LOC120560868 NA coding upstream 459401 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 472852 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 657784 8172560 ~ 8204186 (+)
zgc:113436 LOC102776507 coding downstream 14559 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 32105 8939829 ~ 8965106 (+)
LOC120560490 abcb9 coding downstream 64562 8972286 ~ 8989363 (+)
tcima LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691 coding downstream 225823 9133547 ~ 9134580 (+)
LOC120560494 NA coding downstream 460475 9368199 ~ 9375746 (+)
G60229 NA non-coding upstream 5540 8833627 ~ 8856430 (+)
G60223 NA non-coding upstream 77050 8784653 ~ 8784920 (+)
G60201 NA non-coding upstream 130048 8731713 ~ 8731922 (+)
G60189 NA non-coding upstream 214521 8647221 ~ 8647449 (+)
LOC120560290 NA non-coding upstream 263582 8597542 ~ 8598388 (+)
G60275 NA non-coding downstream 57781 8965505 ~ 8989713 (+)
G60273 NA non-coding downstream 82094 8989818 ~ 8991004 (+)
trnaq-cug_4 NA non-coding downstream 305518 9213242 ~ 9213313 (+)
G60363 NA non-coding downstream 375088 9282812 ~ 9283636 (+)
G60378 NA non-coding downstream 556204 9463928 ~ 9464187 (+)
LOC120560007 NA other upstream 427298 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 434225 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 810630 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 983599 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 1231790 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 83717 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 110167 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1019226 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 1818714 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 1840392 10748116 ~ 10752440 (+)

Expression


Co-expression Network