rnf10 (rnf10,LOC102784202)


Basic Information

Item Value
gene id rnf10
gene name rnf10,LOC102784202
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14365222 ~ 14374233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802775.1
CATCCGGGTCTCTCAGGTTCTTGTTTGGCGACCCGTCGCCATTAAAGCAAGCTCGTTGTAGCGGATATTTTTCTTGGTCATAATCTTTGAATTGTCACGTTTTCCAGCTTTTGGAAAACATTTAACGCCTTGTTAAGGGCATTTTGTTTTCCTTAACAAGTACAAACCTTAAATTCGGGGGGTCTTGGCCCCGCGTGGCGAGCATTCGTCCTATCTTCCAACAGCCTCCATAACTTGAGACGCCGAAATCGTGTCTCTTATTTTTTCTCTGGTTGTTTTATTGTCAAGATGTCACCGTGATGGGGTCTCCGCGTTTGACAGAAATGAACCAGGGCCTTCGTCGCCTGACCCGCACTCACTGCAGCCCGCTTTCCCCTTTCGTTTTTCTGTTTGATGCTAGAGAGCTCAGCGGCTCTCTACCCGGAGCTCGGCCCCAGAACCGCTCACCGCACGGAAACAAACATGGAGAAAAACCCCaacagcagcaccaacaccaAGGTTCCACCCCGTTCCAGCTCCACAGGCCCAACACCGGGAGATTCTAAACCTAAAACAGaagGAAAAAATAATGGAGGCTCAAAGCGCTACAGCCGCAAGCGTGAGCCCTCCTGTCCCAAAACCGACAGTTTCCAAGGCACTCGTCACACCAATTCACAGAAAAGCAAGAATTTTGACAAGAGACCCCCTCAGAGAGGTGGAGGACGACAGTATGGAGTTACAGGTGGAGGACGGCGTGAGGAGGTAGCAGAGACACGCCGGGCCGAGTTTAGCCCGGCTCAGTTTGCTGGACCGAAAAAAATAAGCCTCAACCACCTGCTGAACTTCTCCTTTGAACCGCGTGGAGGTAACGGTGGCTTCGGAGATGGAGGCCCCTCCGGTTGGGGCCGCCGAAACAAATGGGGCCACAAGCACAAGCCCTTCAACAAGGAGCTTTTTCTGCAGGCCAATTGCCAGTTTGTGGTGACTGATGACCAGGACTACAAGGCTCACTTCACTGATCCAGACACTCTGGTCAACTGGGACTGTGTGCAGCAAGTGCGCATCTACAGTCATGAGGTGCCGTCTTGCCCCATCTGCCTCTACCCTCCTCTGTCAGCCCGCATCACCCGGTGTGGACACATCTTCTGCTGGCCGTGCATGCTGCACTACCTGTCTCTTAGTGACAAGAGCTGGTCCAAGTGCCCTATCTGCTATGAGGCGGTTCAAACCGCTGACCTGAAGAGTGTGGTCGCCATGGAGACCCGGCAGTATGTGGCTGGTGACGTAATCACCATGCGCTTGATGCGGAGGGAAAAGGGGGCTCTGGTGTCCATGCCTAGCTCTCAGTGGGTGAAGGTGGAAGAGCCTGTTCGCTTTGGAGATGCAAGTCTTAGCCCATACTCCAAGCTGCTGCTGACCTCCCCGACGCAGGTCCTGAGCCTGGTGGCCGAGGAAAAGGCTGTCCTGGAGGCTCAGCTCAGCCACGAAGGGGACGCCCAGGCCTGCTTCATCCAGAGCGCCCTCTGTCTTTTGCAGGAGCGAGAGGAAATGCTGAAGCAGCAGAAGGCAAATGTAGGAGACAGCCTCGACCTGTCCTCTCTGACTCTGGAAGAACCTTCTTCTCCTGTGGAGGAAGTGGTTACTATTTTTAGCAGCACCAAGCCTGTGCTGCAGTACAGCTCTGCATTTGATGACGAGGTGGCGGAGGTGGCGGAGGTCCCAGAGGACGCGGCTGCAGAGCTGCCAGCCATCCCTGAAAGTATTTTGGAGAGTGTGCTGGAGGAGCCTCCAGAGGCTATGATGGATGCAGCCCCAGAGCCCCAGCCTGATGAGGAGAGCCCTGCCAGTCAGGCAGAGTCGGGCCGCCCTTCAACCAGCGTGGTGCACGGACCCTTCTACTATTTCTACCAAGCTGATGACTGCCAGCAGATGTTCCTGCATCCTGTGAATGTACGCTGTCTGTTGCGTGAATACGGCAGCCTGGAGGCCAGTCCGGACTCCATCACTGCCACAGTGGTGGAGATAGTGGGACACACAGTCACTGAGGAGATCCGTCGTCGGCATCGCTATCTGGCTCACCTGCCACTCACGTGCGAGTTCAGCATCTGTGAGTTAGCCCTACAGCCGCCAATCCTGTCCAAAGAAACTCTGGACACATTTGCAGATGACTTGGAGAAGAGAAAGCGCCTGAGGCAGAAGAAAGTAAGGGATGAGAAGCGCAGAGAGAAGCGAATTGAAATTGAAGAGAACAAGAAGCAGGGTAAATATCCTGAGGTGCATATTGGGTTGGAGAACCTTCAGCATTTCCCAGCATTCGGGTCTCCTCCTCACAACAGCAGCCTCCCAGTGCAGCCCGACTTCACATTTGCTCCCTCTTCACCCCTCAGCTGCAGTCCTTCCTCTGATGGGATGAGATTCCCAAGTCTGAATGGGCAAAGCTCTTCACCCATTGTGGGTAGTGTGGAGGATGACTCCCATTGTATGTCCTTTGCACAGATGCTAAGAGATGGGAAGGCCAGAGGTGATGCTGGGCCCAGGATCCCTCCAAAGAAAGATCAACTGCTAGCTCCCCCAGCAGCTGACAGCGATGGAGAGAGCGACGGGTCGGACCGCGTCCCCGTGCCCAGCTTCCAGAACTCCTTCAGCCAGGCCTTTGAGAAGGCACTTCTGCAGCTGGACAATGGCGCAGCTGCTGCTCCTCCGCAACCTGTGGTTGACCCAGATgagaaaggaggaaagaagaagaagaaaaagcaaaaacttcTGTTCAGCACATCCATGGTTCACACCAAGTAGACAACACTGAAGTTCATTTATTCATATTCAGTTTCTTTGAGTTGATCTTCCCACTGCTTGTGTTTTTACTTCCATGCAGATCTTTCTTAGATCTATAAGctatgggggaaaaaaaaaaggttttagtaTGTAGCCATAGTTCATGCCGCTTTAGTCATAGTTCTATGGGCTTGATCCATTTTTGGTTGACATGCCATCTGTTTAATTTACATTAAatgtacatacattttttgttgtacaACTAGGTCGACGCTTTGCAGCCACCTCCTGAAGTCACACTGAAAGCCATATTGGTAACATTTTAATTGAGAAGTAAAGCAAGGGATATAACAACCTGTGGGGCTCTCATTATGTATGCTTTAGGCTTTTCATGGCTTCCAGATACCTGACTTGTATCACAGTGGTTTGCTGTATGATGTCCAACTTTCCTGAAGTTGAACCTGAGCATCTAGGATCCCTGAGTAATATTGATAAGATAACTCTGGGTGCTTTATATTAGAGTTGCAGTCAGCCAGCTGCAGGTAAGTTGcaccttttttaaatcttttccaTGATGCTCAGCACTCAGACATCAATGTGTGATTTCAGCTTAGAATAGATGGAGACCAATACACTTCAGTGTTTTATCACATTTGGGCTAGTTTGAGCTTGATCAGCCTTTTCAAGAGGATAGATTTTTAGGATAGATATCAATGCCATGGTATTTTGTAACAACATGAATACATATAATATCATTATGAGGAAGTGAAAACACAGTATTGTATTAAAGAGATTAGGTCTTCTGGTTCAACAGAACTCCAGTGTATTCTGCGTGATTAAACCATAAGTACGCACTTTTCTTCTCATTTCTCCTGTCATCTTCTGTTGTAAAAGGTTTACTAACTTTTAACATTACTCCCACAGATTAATTTCAGTGTTGAAAATGTGTGAAATTAGAGAATTGCTGACATTTAAAGAAGGCTTTGAAACCTGAAGTGGAttggaaatttgttttgtttagggTTCTTTAATTCACCTTAACATTTTGAGCAAGTGTAAGAATGGAAATGAATAAACAATTATGCACAATCAA

Function

symbol description
rnf10 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of myelination and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human RNF10 (ring finger protein 10).

NR:

description
RING finger protein 10

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802775.1 True 3847 mRNA 0.49 17 14365222 14374233

Neighbor

gene id symbol gene type direction distance location
LOC120561371 crybb3,LOC103469711,LOC102784487 coding downstream 37710 14324930 ~ 14327512 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding downstream 45704 14317597 ~ 14319518 (-)
ctu1 ctu1 coding downstream 47832 14314594 ~ 14317390 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding downstream 52877 14289002 ~ 14312345 (-)
LOC120560399 LOC103369226,LOC100702093 coding downstream 104983 14255697 ~ 14260239 (-)
pop5 pop5 coding upstream 423 14374656 ~ 14376857 (-)
hnf1a hnf1a coding upstream 18374 14392607 ~ 14399967 (-)
LOC120561207 NA coding upstream 71230 14445463 ~ 14448015 (-)
asgrl1 NA coding upstream 79855 14454088 ~ 14456312 (-)
LOC120559985 nacc2,LOC102304562,LOC102778489,LOC103397964,LOC101483941 coding upstream 141566 14515799 ~ 14532759 (-)
G61425 NA non-coding downstream 51290 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 79335 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 82874 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 110719 14252253 ~ 14254503 (-)
G61404 tnks non-coding downstream 131784 14219347 ~ 14233438 (-)
G61559 NA non-coding upstream 13290 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 37164 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 42942 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 86693 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 111009 14485242 ~ 14485537 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other downstream 896 14328151 ~ 14364326 (-)
G61264 NA other downstream 775890 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1809937 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2303576 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2771562 11285385 ~ 11593660 (-)
trnaa-agc_14 NA other upstream 564742 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 570263 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 574526 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 577269 14951502 ~ 14951583 (-)
trnas-gcu_1 NA other upstream 593446 14967679 ~ 14967760 (-)

Expression


Co-expression Network