pop5 (pop5)



Basic Information


Item Value
gene id pop5
gene name pop5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14374656 ~ 14376857 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039802777.1
ACCCAGCAGCATCGCAAACATGACCAGCGTGTGGCGCTAGTGCCACTCTCCGGGTAGTAGCTAGATCGTTTTGTTGACGGAAGTTCGCACGGAAGAAGAAAGAAGCAGTAATGGTGCGGGTGAAGTCCAGGTATTTACTGTGCGAAGTGAACGTGTCAGACAGGAGCCGCCTGTTGTTGCTGGATGACCGAGCTGTTGCAGCGACAGTGAAGGCAGCGGTGGCCCGCATACACGGGGACTATGGGGCAGCTCTCTGCAGCATCAGGTTCTCTGTGAAATATCTGAATGCTCATACTGGAATAGTATTCCTGCGCTTCCCCAAAAAGTGTTACAGACTCCTCTGGTCTGCATTGCCTTTCATTACCTGTATTGAAACCCGTGGGCAGAAGatctcctgttttctgaactgTTTGCATGTCGGAGGAACAATGAGAACATGTCAGAAGTTTCTTATCCGATACAACACCCAGCAGCTCCATCGAATGCTCCCTAAGTGTAAAAATGAAGaaGAAAAGCAACAGGTTCAGAAAGCAATTCTAAACTGCTCCCTAACAGGAAAAAACAAGGAAGCATTTGAAGAAGAATCAGAGAGtgaggaagatgaagaagagTGACTTTACAGCATGCCGTAAAAGGCAGCAAACAATTTCTGTTACAGGACtgatacaaagaaaaaaatatgaagtATACAGACTGTATGTTGGTCTTCAACAGAGGAACACCTTACATGATGTTTGTCACACATAAATACTTTGGGTTGGCAGAGTGACCTGATGGTCAGTATTTAACAGCAAGTTCACATGTTTATGTTGATACTGAATGTCTTAGTTCTTGTGGGAAATTGTcaccaaaaagaaaaactgcaaaCACATGGCACAATATAATGACTATGTTCTTATTCTGAAGAAACAAAGTTTATATCTTTTTAATTAACTTCTTTTGtatttctacaatagtttgTGCGCCTCTGTATTTTGTTTACACATTAAAGCACTGTTTTGGAAGATAA

Function


symbol description
pop5 Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in rRNA processing and tRNA 5'-leader removal. Predicted to act upstream of or within RNA metabolic process. Predicted to be located in nucleolus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Orthologous to human POP5 (POP5 homolog, ribonuclease P/MRP subunit).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03537 POP5; ribonuclease P/MRP protein subunit POP5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039802777.1 True 1009 mRNA 0.42 5 14374656 14376857

Neighbor


gene id symbol gene type direction distance location
rnf10 rnf10,LOC102784202 coding downstream 423 14365222 ~ 14374233 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding downstream 47144 14324930 ~ 14327512 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding downstream 55138 14317597 ~ 14319518 (-)
ctu1 ctu1 coding downstream 57266 14314594 ~ 14317390 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding downstream 62311 14289002 ~ 14312345 (-)
hnf1a hnf1a coding upstream 15750 14392607 ~ 14399967 (-)
LOC120561207 NA coding upstream 68606 14445463 ~ 14448015 (-)
asgrl1 NA coding upstream 77231 14454088 ~ 14456312 (-)
LOC120559985 nacc2,LOC102304562,LOC102778489,LOC103397964,LOC101483941 coding upstream 138942 14515799 ~ 14532759 (-)
qsox2 qsox2,LOC102781541 coding upstream 158411 14535268 ~ 14547863 (-)
G61425 NA non-coding downstream 60724 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 88769 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 92308 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 120153 14252253 ~ 14254503 (-)
G61404 tnks non-coding downstream 141218 14219347 ~ 14233438 (-)
G61559 NA non-coding upstream 10666 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 34540 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 40318 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 84069 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 108385 14485242 ~ 14485537 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other downstream 10330 14328151 ~ 14364326 (-)
G61264 NA other downstream 785324 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1819371 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2313010 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2780996 11285385 ~ 11593660 (-)
trnaa-agc_14 NA other upstream 562118 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 567639 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 571902 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 574645 14951502 ~ 14951583 (-)
trnas-gcu_1 NA other upstream 590822 14967679 ~ 14967760 (-)

Expression



Co-expression Network