rasgef1ba (rasgef1b)


Basic Information

Item Value
gene id rasgef1ba
gene name rasgef1b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33156914 ~ 33294101 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802789.1
ACAGGCGAGAGCTACAGGCTGTAAGCTCCACATCGAGCGGATACATCGCTCACTCGGCCGGTATTTCGCACCTCGCCTctgaagaaagagaagaaggaaggagggatgcGCGCAGGGTCCTTGAACGCCACAAATAAGTTCCCGAGGCTGAAAGAAAGAGGACTTTCCTGTTGATTCAGCTCTGATCTTCTCCTCACCTCACCCCGGCACATTTCAGGAATATTTCTGGAGCGCACCTCTCACATCTATATGGCAAAGTTCCTGGCTGAATTACTGGGATGCACACTTCCAGACAAGGGCACTCCACCTTTGTTCGAGTGCCGGAGCCAACCCCATCTCGGGCTGAGGCCTTCCTCCAAACAGCGGCCAACAATCTTTGGGACATTAACCAATGAGAGAGCACTGTTTGACAACAGACTGGACAACATGCCTCAGACACCACCGTTCACGGGGCAGCTGAAAACCGGCAGCTACAACAAGAACCTGTACCAGACCAAGGAGGAAAGCTACCCCGGCCTCTATTATCATGACAACAACCTGGCGTCTGGGTCACTGGAGGCCCTCATTCACCACTTGGTCCCAACTGCAGACTATTATCCCGATaGGACGTACATCTTCACCTTCCTGCTCAGCTCTCGTCTTTTTATCCGCCCACACGAACTCATGTCGAAGGTGTGTCACCTGTGCGTGGAGCAACAGCGACTCAGCGACCCCCAAGCTGACAAGATGAGAGTCAGGAAGATCGCTCCCAAGATCCTCCAGCTGCTGACCGAGTGGACGGAAACCTTCCCATACGACTTCAGGGACGAGAGGATGATGCGGAGCCTGAAGGAGCTGACCCACCGGCTGGCCATTGGAGACGAGGTTTACAGGAAGGCAGTCGGCCAGATGAGCCAGGGTCTGATCAGGAGGTTGACGGTGCTCAGCCAGTACGAGGAGGCGCTGGTCAAGATCAACGCCACAGCGGCCGAACGACTGACGGCTGTTAAGGCAAAGCCTCAGGCAGCCATCCAGAGAGACATGCTGTCCATCTGCAACGACCCATTCACTGTCGCCCAACAGCTCACGCACATAGAACTGGAGAGACTGAGTTACATCGGACCTGAGGAATTCGTCCAGGCCTTCGTCCAGAAAGACCCTCTGGACAACGATAAGAGCTGCTTCAGTGATCACAAGAAGGCCAGCAACCTGGAAGCTTATGTCGAATGGTTCAACAGACTCAGTTATCTGGTGGCTACAGAAATCTGCTTGCCTGTGAAGAAGAAGCATCGAGCTCGAGTCGTCGAGTTCTTCATCGACGTGGCGCGCGAGTGCTTCAACATCGGCAACTTTAACTCCCTCATGGCCATCATATCTGGGATGAACATGAGTCCTGTGTCTCGACTCAAGAAGACCTGGAGTAAAGTGAAAACGGCCAAGTTTGACATCTTAGAACACCAGATGGATCCGTCCAGCAATTTCTACAACTACAGAACAGCGCTGAGAGGAGCCACACAGCGGTCGATCACcgccaacagcagcagagagaagattgtcatcCCTTTCTTCAGCCTGCTCATAAAAGACCTCTACTTCCTCAACGAGGGATGTTCCAACAGGCTGCAGAGCGGACACATCAACTTTGAGAAATTCTGGGAACTGGCCAAACAAGTGAGCGAGTTCATGGCCTGGAAGAAAGTGGAGTGTCCGTTTGAGAAGGATCGTAAGATCCTGCAGTACCTGCTGACTGCTCCAGTATTCACTGAAGATGCGTTGTATCTGGCATCGTACGAGAGCGAAGGTCCTGAGAACAACATGGAGAAGGACAGATGGAAGTCTCTGAGATCCACTCTGCTAAGCAGGGTCTGAACTTCTAATCTGAAGAAATCAGAATGAAGACAAACCCCTGACAAGCGAGCCGGGCCCTGTCAACGCCGCCGTTGTCTAAACGAAGTATCCCCGTGTTGGAAGGGAAACGACAATCTCTACTTTGGCTGCCCCAGCTTCAGATTTCTATCAAGCTCTGCTTTTCCTCACCTTCTCGCTTTTTGTGCTGTATATTTCAGGACAGCTATTTTTCCTCTTTGTATGACTTTGtagtctttttgtttttaaaaaagaaatgctacAAACCTTCACAGTAAAAGCCAAGGGGtgccaaggtttcttttctGAAGCATTTCACCCTGATAAACCTTCTGTGAGCGTAAATGGAGTTGTTGGGGTTGTTTGTCCACCCCGCTAGTTTTCAacaagttttttgttgttttttttccactgaagCTACAAAGTTAGCTGCTGGTTGGCTAACTCAAAAGAAACGCTTTACTCGCTGGTTTCATAAGCCAGCGTTCTTTGTACGGAGAACTCCAAACTTGCCTGGAACACTGTTGTTTATCATTAAGCTAGCCATCatttgtagttttattttgtctccTTCCTTTTGAGTATATGTCACTTCATGTTCCTGAAGGTTTTGTTAATCGCGATGTGTAAGAAAATGCACTGGCTGCATTTTAAAGAAGATGTAAATGAGCTTTTTTGTTCGTTTGTGTGGTATacatttttgtgattttcttgcCGTTTATATTTGACACACCCAAGGCCTCAGTAAACTTCAACCATAAGAGAAACACTTTTGGTTAAAACGGCATCTGAAACCCCCGTCCCCTGCGTCTTTCCAACATAGGAATTGGGGTTTGAGACACTGTTGGATGCTCTGCTGGATGAGCACTTCATTACTGAGGCCTTTAGCAGTGAGTTTAAATGGAAGGTGTGATGATAGTGTGTATCCTGTTGTTCCTGATAATTAGTGTTAAAATAGCCCCACTGCTGCTGAGAAGATAAGCTGGGCTGTAGGCTACCATTCATATTTTCCCCTTTTTGTTCCTGCTCTAATGTAGAAAATGAGTATGCTTGTGCTGCCCCCTGGTGGTTCAGTCTGAAAAGTGAATGGATTTTGTGCGGTCGAGTAATGTGCACTGAGGATTTCTGTTTAAACCCTAAACATGCTAAATAGtatcatttttatgtttttattttcatattataaaaaagtacagtttcttccatatttgttttatttataaatatatttgtgtagtCACATTATGTCCTCATGCcaatatttactattattttattgttatttaattttgtaCTAGGTACATAACATGCTTAAGTAGTCCTCAGGTATTGGCTTaactattatttttatatacaaGTTTGTATGATTATTTTTCAAGGTACTAGCTCAGAGTATGATGTTAAACGACTGATGTCTGCTTTGCCTTGACTGCTCCTCCCTCAACACAGAGTGCTGTTGTGATTTATTGTgtactgtgtttgttttttccccttccTGTGTTTGTTCATTTGTATTTGGACTGTTAAAAATGGAAAGAGGaaccatttgtaaatgagtTGGTAGTGTTTAAAAGAGaaagttaataaaaaatgtttaaaagta
>XM_039802790.1
CGCGGCTTCGGAGCTCACAGACACAAGAGAAGGCGGcgcagcaacagcaacacagCCGGAGCTGTCAATTCATTCATACGGATTCTGCTTCTCGGAACAAACCCGCTGCTCTGAAACCGACAATACCCGTTTTGCTTTCCTGCATTTATACCTGAATAATGCTGCAGTGAGTGACTGGAGTCGGGAGGGTCTGCTGGGTTTCACCGCCTCGGCTTATTCACACGTAAAAGGAGAAAGTCTAGGCTGTTGAAAGACGGTTTCGCACATTTTTGGAAAGGATACGAGGGGGATTCGCACCTGGATTGCTTGTTGAGGACAACATGCCTCAGACACCACCGTTCACGGGGCAGCTGAAAACCGGCAGCTACAACAAGAACCTGTACCAGACCAAGGAGGAAAGCTACCCCGGCCTCTATTATCATGACAACAACCTGGCGTCTGGGTCACTGGAGGCCCTCATTCACCACTTGGTCCCAACTGCAGACTATTATCCCGATaGGACGTACATCTTCACCTTCCTGCTCAGCTCTCGTCTTTTTATCCGCCCACACGAACTCATGTCGAAGGTGTGTCACCTGTGCGTGGAGCAACAGCGACTCAGCGACCCCCAAGCTGACAAGATGAGAGTCAGGAAGATCGCTCCCAAGATCCTCCAGCTGCTGACCGAGTGGACGGAAACCTTCCCATACGACTTCAGGGACGAGAGGATGATGCGGAGCCTGAAGGAGCTGACCCACCGGCTGGCCATTGGAGACGAGGTTTACAGGAAGGCAGTCGGCCAGATGAGCCAGGGTCTGATCAGGAGGTTGACGGTGCTCAGCCAGTACGAGGAGGCGCTGGTCAAGATCAACGCCACAGCGGCCGAACGACTGACGGCTGTTAAGGCAAAGCCTCAGGCAGCCATCCAGAGAGACATGCTGTCCATCTGCAACGACCCATTCACTGTCGCCCAACAGCTCACGCACATAGAACTGGAGAGACTGAGTTACATCGGACCTGAGGAATTCGTCCAGGCCTTCGTCCAGAAAGACCCTCTGGACAACGATAAGAGCTGCTTCAGTGATCACAAGAAGGCCAGCAACCTGGAAGCTTATGTCGAATGGTTCAACAGACTCAGTTATCTGGTGGCTACAGAAATCTGCTTGCCTGTGAAGAAGAAGCATCGAGCTCGAGTCGTCGAGTTCTTCATCGACGTGGCGCGCGAGTGCTTCAACATCGGCAACTTTAACTCCCTCATGGCCATCATATCTGGGATGAACATGAGTCCTGTGTCTCGACTCAAGAAGACCTGGAGTAAAGTGAAAACGGCCAAGTTTGACATCTTAGAACACCAGATGGATCCGTCCAGCAATTTCTACAACTACAGAACAGCGCTGAGAGGAGCCACACAGCGGTCGATCACcgccaacagcagcagagagaagattgtcatcCCTTTCTTCAGCCTGCTCATAAAAGACCTCTACTTCCTCAACGAGGGATGTTCCAACAGGCTGCAGAGCGGACACATCAACTTTGAGAAATTCTGGGAACTGGCCAAACAAGTGAGCGAGTTCATGGCCTGGAAGAAAGTGGAGTGTCCGTTTGAGAAGGATCGTAAGATCCTGCAGTACCTGCTGACTGCTCCAGTATTCACTGAAGATGCGTTGTATCTGGCATCGTACGAGAGCGAAGGTCCTGAGAACAACATGGAGAAGGACAGATGGAAGTCTCTGAGATCCACTCTGCTAAGCAGGGTCTGAACTTCTAATCTGAAGAAATCAGAATGAAGACAAACCCCTGACAAGCGAGCCGGGCCCTGTCAACGCCGCCGTTGTCTAAACGAAGTATCCCCGTGTTGGAAGGGAAACGACAATCTCTACTTTGGCTGCCCCAGCTTCAGATTTCTATCAAGCTCTGCTTTTCCTCACCTTCTCGCTTTTTGTGCTGTATATTTCAGGACAGCTATTTTTCCTCTTTGTATGACTTTGtagtctttttgtttttaaaaaagaaatgctacAAACCTTCACAGTAAAAGCCAAGGGGtgccaaggtttcttttctGAAGCATTTCACCCTGATAAACCTTCTGTGAGCGTAAATGGAGTTGTTGGGGTTGTTTGTCCACCCCGCTAGTTTTCAacaagttttttgttgttttttttccactgaagCTACAAAGTTAGCTGCTGGTTGGCTAACTCAAAAGAAACGCTTTACTCGCTGGTTTCATAAGCCAGCGTTCTTTGTACGGAGAACTCCAAACTTGCCTGGAACACTGTTGTTTATCATTAAGCTAGCCATCatttgtagttttattttgtctccTTCCTTTTGAGTATATGTCACTTCATGTTCCTGAAGGTTTTGTTAATCGCGATGTGTAAGAAAATGCACTGGCTGCATTTTAAAGAAGATGTAAATGAGCTTTTTTGTTCGTTTGTGTGGTATacatttttgtgattttcttgcCGTTTATATTTGACACACCCAAGGCCTCAGTAAACTTCAACCATAAGAGAAACACTTTTGGTTAAAACGGCATCTGAAACCCCCGTCCCCTGCGTCTTTCCAACATAGGAATTGGGGTTTGAGACACTGTTGGATGCTCTGCTGGATGAGCACTTCATTACTGAGGCCTTTAGCAGTGAGTTTAAATGGAAGGTGTGATGATAGTGTGTATCCTGTTGTTCCTGATAATTAGTGTTAAAATAGCCCCACTGCTGCTGAGAAGATAAGCTGGGCTGTAGGCTACCATTCATATTTTCCCCTTTTTGTTCCTGCTCTAATGTAGAAAATGAGTATGCTTGTGCTGCCCCCTGGTGGTTCAGTCTGAAAAGTGAATGGATTTTGTGCGGTCGAGTAATGTGCACTGAGGATTTCTGTTTAAACCCTAAACATGCTAAATAGtatcatttttatgtttttattttcatattataaaaaagtacagtttcttccatatttgttttatttataaatatatttgtgtagtCACATTATGTCCTCATGCcaatatttactattattttattgttatttaattttgtaCTAGGTACATAACATGCTTAAGTAGTCCTCAGGTATTGGCTTaactattatttttatatacaaGTTTGTATGATTATTTTTCAAGGTACTAGCTCAGAGTATGATGTTAAACGACTGATGTCTGCTTTGCCTTGACTGCTCCTCCCTCAACACAGAGTGCTGTTGTGATTTATTGTgtactgtgtttgttttttccccttccTGTGTTTGTTCATTTGTATTTGGACTGTTAAAAATGGAAAGAGGaaccatttgtaaatgagtTGGTAGTGTTTAAAAGAGaaagttaataaaaaatgtttaaaagta

Function

symbol description
rasgef1b Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction. Predicted to be located in early endosome; late endosome; and midbody.

NR:

description
PREDICTED: ras-GEF domain-containing family member 1B isoform X1

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802789.1 True 3448 mRNA 0.46 16 33156914 33294101
XM_039802790.1 False 3342 mRNA 0.46 14 33259709 33294101

Neighbor

gene id symbol gene type direction distance location
wdfy3 NA coding upstream 86404 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 255367 32854714 ~ 32901547 (+)
LOC120560720 sec14l2 coding upstream 497584 32636836 ~ 32659330 (+)
ascc2 ascc2 coding upstream 530225 32614892 ~ 32626689 (+)
trnap-ugg NA coding upstream 585155 32571688 ~ 32571759 (+)
prkg2 prkg2 coding downstream 9238 33303339 ~ 33344015 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 484906 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 876374 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 978846 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 986878 34280979 ~ 34289653 (+)
G66498 NA non-coding upstream 16821 33139868 ~ 33140093 (+)
G66497 NA non-coding upstream 20897 33135790 ~ 33136017 (+)
G66496 NA non-coding upstream 29012 33127702 ~ 33127902 (+)
G66439 NA non-coding upstream 84192 33071537 ~ 33072722 (+)
G66340 NA non-coding upstream 418539 32720755 ~ 32738375 (+)
G66521 bmp3,LOC102780994 non-coding downstream 55405 33349506 ~ 33350553 (+)
G66522 bmp3 non-coding downstream 57598 33351699 ~ 33352950 (+)
G66568 NA non-coding downstream 431419 33725520 ~ 33725782 (+)
G66571 NA non-coding downstream 461468 33755569 ~ 33755955 (+)
LOC120561187 NA non-coding downstream 475743 33769844 ~ 33772534 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 44098 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 543976 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 646177 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 686087 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 786930 32364860 ~ 32369984 (+)
antxr2a antxr2 other downstream 223498 33517599 ~ 33603625 (+)
G66578 NA other downstream 481824 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1219909 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 1471829 34765930 ~ 34773806 (+)
G66832 NA other downstream 1567398 34861499 ~ 34864690 (+)

Expression


Co-expression Network