LOC120560373 (LOC106570904)



Basic Information


Item Value
gene id LOC120560373
gene name LOC106570904
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33248404 ~ 33252407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039802791.1
GACGTCATGCGCTGAACTCGACGTCACCCGGAAGAGAGgagtgtcggtgtgtgtgtgtgaggattgTTTACATTTTCTGTAGCCCGTGAAAATGAATCCACCGATGATCAACTCGACCAGCTCCGTTTCAACGACCAAAAGGAAACGAGAAGCTGAACGCTCGATTAACTGGACAGTGGAGGAAACTCAGGTGCTGCTGTGCGCCTGGAGTGACGAGCGCATCCAGAAGAGTTTGGCAGAAAACCTTCGCAACCGCCATGTCTTCAAACACCTCTCAGCCCGCATGAGTGAAATGGGTTTCTCTCGGAGTCCACACCAGTGCCGTCTTCGGGTCAAAACTCTGAAGGCTAACTATGGGAGAGCCAAGCTACAGAGGAGCATTGACAGCTCGCAGCCTTgcacttttaaatattttgccGAGATGGATGCTGTGTTGGGCCGGAGGTCAGCGGGAGGGGAAGGAGGGCCCTATTTTGTTTCTCCAGAACGGACGGCAGAGCGTCACCTTGAATCCCTCGACAGGACAGGAAGTATCAAGCCAGATTTAAATTCTAATACAGAGATTAGTGGACACAATTTTGGTTCTTTGGGGAGGACAGGAAGACAACGTTTGAGCTCTttagaggagagaggaggccTTCAGTCTTGGCAGCTCGACTCTGAAGTCAAGTTGGAGGACAGAGAAGATTCATCAGATGAGTTTGAGTTCAGCGATACAGGATTCCCACAGCGACACCATGAAGTTTATCTGGAATCATCCATCCATCGTGAAATGAGTGGTACTCTAGTGGAAAACAGCTTGAGCCCTCCTTCCCCACATGTAGTACCACCTCCACCGGCCCCTCCCCCTCCTACCCAATCCACTACCTCTCCTCTCCCTGCACCCCCAGATCCAAGCTCCAACACCCTCCCCACCTCTGGCCACCATCACGCCGAGTCCTCCTGCCTGGAACCCGCCCTCAAGCACCTGACGGACTGCTTCCAGCGGCTGGTGTCCGAGACACGGGGCCTGCTGGTGCAGCTGGAGAGCCAGCGGCAGGAGCAGGCTCGCTGGCATCAGGACCTCCTGGCCCAGTGGCTGCAGAGGGAGGAGCGCCGGCAGAGAGAGACGGCTGAGAGGGacgagaggagggagaaagctCGCATGGAGCATGAGATCAGAGTCCTGGAGCTCCTCACAAGTCTAGCCAGAGAACACGGCTGTAAATGTGGAGGCAGCCAGACTGTAGCGGAAGCACCAACTGGTCCCAATCATACCATGAACAAAGGCGGAAATTAGGATGCACTCACACAAAGGATCTCTTTTTACAGTGGAATGGTATTCAACCTCAGGTAGACCCAAATAACAGAACCGATAATGCAAAGAGACACATTCAAGACGGCTTAGTTTAGGCCTTAACCCTGAGTCCTATGGAGGGAAATTTCAGTTGAACCAAATTCAGGGAAAAACCCTCAAAATCCAAGAATCTGTGAGTATAAAAAGATCATTGTTGACTGACAACCAGTTGTGCTCAGAAAGCTTAGAAGATGAAACTATAGTTGAAGTGTGAAGGAGAATTTGttcttctctgttttctgtCACAACATACAGTGGACATAAAAAGTCCACACACCCCTGTTAAAATGCCAGGTTTTTGTGATGTAAAAGAATGAGACAAAGATAAATCATGTCAGGATTTTTTCCACTTTTAATGTGACCTATAATGTGAACAATTCAAttgaaaaacaaactgaaatctttgagggggaaaaataaaaaataaaaggccCCGTTTACatgaagggaagacgcagatattttcctgcggtttg

Function


NR:

description
PREDICTED: uncharacterized protein LOC106570904 isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039802791.1 True 1812 mRNA 0.50 3 33248404 33252407

Neighbor


gene id symbol gene type direction distance location
wdfy3 NA coding upstream 177894 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 346857 32854714 ~ 32901547 (+)
LOC120560720 sec14l2 coding upstream 589074 32636836 ~ 32659330 (+)
ascc2 ascc2 coding upstream 621715 32614892 ~ 32626689 (+)
trnap-ugg NA coding upstream 676645 32571688 ~ 32571759 (+)
prkg2 prkg2 coding downstream 50932 33303339 ~ 33344015 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 526600 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 918068 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 1020540 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 1028572 34280979 ~ 34289653 (+)
G66498 NA non-coding upstream 108311 33139868 ~ 33140093 (+)
G66497 NA non-coding upstream 112387 33135790 ~ 33136017 (+)
G66496 NA non-coding upstream 120502 33127702 ~ 33127902 (+)
G66439 NA non-coding upstream 175682 33071537 ~ 33072722 (+)
G66340 NA non-coding upstream 510029 32720755 ~ 32738375 (+)
G66521 bmp3,LOC102780994 non-coding downstream 97099 33349506 ~ 33350553 (+)
G66522 bmp3 non-coding downstream 99292 33351699 ~ 33352950 (+)
G66568 NA non-coding downstream 473113 33725520 ~ 33725782 (+)
G66571 NA non-coding downstream 503162 33755569 ~ 33755955 (+)
LOC120561187 NA non-coding downstream 517437 33769844 ~ 33772534 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 135588 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 635466 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 737667 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 777577 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 878420 32364860 ~ 32369984 (+)
antxr2a antxr2 other downstream 265192 33517599 ~ 33603625 (+)
G66578 NA other downstream 523518 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1261603 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 1513523 34765930 ~ 34773806 (+)
G66832 NA other downstream 1609092 34861499 ~ 34864690 (+)

Expression



Co-expression Network