araf (araf,LOC103397571)


Basic Information

Item Value
gene id araf
gene name araf,LOC103397571
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4437533 ~ 4456244 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802795.1
TAATAGAATATTGCATCAGTAATTGCTGCTAGTTTTTAAGACAGAACAAACATGACAGTGAATCGGCGCCACCCACTGGGCATTACCGTGCTGTGGAGCCTATGTGTGGAGTTACTTTTCCTAACGCAGCAGACCAGAGAACCAACCAATGAACAAGGAGCATTTCGGAGGTTTTCCGCTTTCCCCGAAGTTCTTGACAGATCCGACTTCAGATTGAAAGAATTCAAGATGGCTGCTACAGGCTCCGAGTAAAGGGCTAACTCTTGTGGATCCCACTGTGCATGAAGCTCTCCTGAGGTTGTGGTGTCGAAGTGCTCTGTGCTCCAGCTCCTCTTGCCTCTCATCAtgtcctccacctcctcctactcctcctcAGGGGACACTAGTCCAGAGGATGTACCCCGAGGTGGGGGCACTATCCGAGTCTACCTCCCCAACAAACAGAGGACAGTGGTGAATGTTCGCCAAGGGCAGACTGTGTACGAGAGTCTGGATAAAGCGCTCAAAGTGAGAGGCCTGAGCCAAGATTGCTGTGCTGTATTTCGCCTTCTAGAAGGCCGTAAGAGACTGACGGATTGGGACACAGACATCACTCCGCTGGTTGGAGAGGAGCTTTTAGTCGAGGTCCTGGATGATATTCCCCTCACCATGCACAACTTTGTACGGAAAACCTTCTTCAAGCTGGCTTACTGTGATTTTTGCCACaagtttctttttaatggcttcaGATGTCAGACATGCGGCTACAAATTTCACCAGCACTGCAGTAGCAAAGTccctactgtgtgtgtggacatggATACAGTGAGCAAACGGTGTGATCCTAATCCCTGCACAGATGAGTACCCAAGGATACTTTTGCCAGAAAATTCCCCATCACAGAGCAACCTAGCCTTAACCCCAGAGCCTGCTGGGATGGACCTCCTGTCCCCGACCTCTGCCTTCCGTTTCCCCATGCCGGGTGGAGATGGCCAATCTCTACAGAGACATCGCTCCACCTCCACTCCCAATGTCCATATGGTCAGCACAGTGGGCCCTGCTGGCACCAGCATTATAGAGGAAGCACTAAAGTTCAGCAACGCAATGGGTCCTGAGCCCTCACCAAAGCCCTCCACCAGCCCGCCCACTACTCTGGGCTCTCCCGGGAGGAGACCACCCTCAGAGCACAAGGAGCGCAAGCCCTCCTCGTCTGACGACAAAAAGAAAGTGCACCGAGGGGGCTACAGAGACTCAAGTTACTACTGGGAGGTCCACTCTCGAGAAGTCACCATTCAGAAGAGAATAGGTGCTGGCTCCTTTGGAACAGTCTTCAAGGGCAAATGGCACGGAGACGTTGCAATCAAGATCCTTAAAGTCACTGAACCAACGCCTGAACAGTTGCAGGCCTTCAAAAATGAAATGCAGGTCTTACGGAAGACCCGCCACGTCAACATCCTGCTGTTCATGGGCTATATGACTAAGCCCAACTTCGCAATCATCACACAGTGGTGTGAAGGCAGCAGCCTGTACCGCCATCTGCATGTCACAGAAACCAAGTTTGACACTATGCGTCGCATTGATGTGGCCAGACAAACAGCACAGGGCATGGAtTATCTTCATGCGAAGAACATAATTCATCGAGATCTGAAATCAAACAATATTTTTCTCCATGAGGGCTGGACTGTTAAGATTGGTGACTTTGGCTTGGCCACAGTGAAGTCTCGGTGGAGCGGCTCTCAACAGGTAGAACAGCCCAGTGGATCCATTCTGTGGATGGCTCCTGAGGTGATCCGAATGCAGGACAGCAACCCATATACGTTCCAGTCTGACGTATACGGCTACGGAGTAGTGCTGTATGAGCTGATGTCAGGGACCCTGCCTTACTCCATTATCAACAACAGAGACCAGataatCTTTATGGTTGGACGTGGTTACTTGTCTCCAGACCTCAGTAAGCTGTCTAGTACCTCGCCCAAGTCAATGAAAAGGCTTATCATTGACTGCCTGAAGTTCAAACGTGATGAGAGGCCCCTGTTTCCACAGATCCTGGTAGCCATTGAGCAGGTTCAAGACCTGCTGCCAAAAATTGAGCGAAGTCGCTCCGAGCCGTCGCTCCATCGGGCCGTCCACGCAGAGGACCTGAACCCCCTTTTGTTCCACACCACCAGGCTGATGCCCCTCTAAGCTCCCAACAGCACGGGACAGAGAGGTCGTCACACTGTCCAAAATCAGACCACAAGCCCCAACTCACTCCCTACCCCCGCAGAGCCCGCGAGCTGCCCCACACAGTGCGAAACTCAGTAACTGCAGAAATAATGGCAACACACTGTTTAGACTGATAGTGAATCTTCTTTTCCTTTGTACACGTGACAAAGATCTGCCCAAGTGAAATAACTCTCTACTGTATCTTGTAGGATGTTAAAATGCCTACTTGAGAAAAGTCATCAAACGGTTTGCTTTACATACTCTGACCTACTAGGAGGCATTTAAATTGTTCTGAGGAAATGGTAAAAAACAGACATGTTTTGCACATACGCTGCAAAATTGTGTTGCCCATTTTcagtagtaaaaaaaagtcttactCAGACCTTTAAGAAGCACTGTGATCATagtcaaaatatttaaattgGTTCAACAGCCATAATGCTGGATCTGCTGGTTCAGGTCACCTGATCAGCTTACATATTTCAAATGCTCAGTTGTCATGCGTCCCTTTCAGTTAGCCTTTCAGTCAACATGCGATGGGAGATCTGACATGTGAAGGTAGTGATTTGAAAGCAAACGCAGTGCCTGTTTGGGAGTGCTTTGTAAAACATAGGACATTTTGTCTCAATGGGAACCTCCACTATCCGCTGCTTTTGCAAATATTTCAGTGCTAGaatttttgttgtatttaaccacaacaacaaatcaacatgaggaggaagagaaaactCAACCTTTTGGAAGCCTAGAATAGATGGGCAACCTCAAACACTAAATGTAAAAAGTGTTTAGTAAAAAAAGgtttagtaaaaaataaaaaaagaatagttAATTTGGTGAATGTGGctctgcacatactgtatagcaGTGACAGGTGTGTtgcaaatcaaaatcacatttttttaacaccTCAGAATAATTATGTAATAAGAATCTCATGTGGACGGACATACTCAAATCACCAAGTTCTTTTTAAACCCGAGTTTCCATTGATGTTGCAATGAACTCAAAAAGAGCACTTGACATGTGAAAGTTGAACAGTTAACTCAGCAGGGCCTTGTAGGCTGTAGTTCaaaatcaaatgtgtttttttcctgttttgtctGAGGGGTAAAGATGTGCATTGTAATTCATATTCAATTCATAATAGGCCAAGTTCATCTGGTTTCACACTACTTTGAAGAAAATTAGTTAGTTAATTAATCAGCTAAAAGTTACTTGTAAGATGATTTACCTTACCCCACTGGGTTTTCTTTCAGCTTGTATATAAGTTCCATCTGAATACAGGATTAAATTGTTAGGACCAACATTTTTGCAGTGTACTGTACATAAAAGGGCATGTATGATTTAATTTGTCATTCTGATATTTAACATTTCTAAGATTCCGAAATACAAGGTTTAACAATTTT

Function

symbol description
araf Enables SMAD binding activity. Acts upstream of or within negative regulation of nodal signaling pathway and pathway-restricted SMAD protein phosphorylation. Predicted to be active in cytosol and mitochondrion. Is expressed in head. Orthologous to human ARAF (A-Raf proto-oncogene, serine/threonine kinase).

NR:

description
serine/threonine-protein kinase A-Raf-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08845 ARAF, ARAF1; A-Raf proto-oncogene serine/threonine-protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802795.1 True 3593 mRNA 0.46 16 4437533 4456244

Neighbor

gene id symbol gene type direction distance location
npr3 npr3 coding upstream 48738 4357094 ~ 4388795 (+)
pdzd2 LOC102293871 coding upstream 93863 4271504 ~ 4343670 (+)
LOC120560812 thg1l,LOC106912903,LOC103154062 coding upstream 210501 4226036 ~ 4227032 (+)
si:dkey-3h3.3 NA coding upstream 229034 4199523 ~ 4208499 (+)
ccdc125 NA coding upstream 547878 3869033 ~ 3889655 (+)
LOC120560544 ppp6c,LOC102784428,LOC105915786,LOC106585446,LOC103397055,LOC105014157,LOC101171716 coding downstream 240359 4696603 ~ 4703041 (+)
golga1 golga1 coding downstream 248473 4704717 ~ 4735322 (+)
rpl35 rpl35,LOC103397472 coding downstream 281696 4737940 ~ 4741131 (+)
chfr chfr coding downstream 934443 5390687 ~ 5416871 (+)
ankle2 ankle2 coding downstream 1013062 5469306 ~ 5488700 (+)
G59174 NA non-coding upstream 2273 4433093 ~ 4435260 (+)
G59163 NA non-coding upstream 87614 4349566 ~ 4349919 (+)
G59132 NA non-coding upstream 108073 4307919 ~ 4329460 (+)
G59093 NA non-coding upstream 304469 4132848 ~ 4133064 (+)
G59042 NA non-coding upstream 476214 3961060 ~ 3961319 (+)
G59175 NA non-coding downstream 5120 4461364 ~ 4462824 (+)
G59217 NA non-coding downstream 97777 4554021 ~ 4555654 (+)
G59218 NA non-coding downstream 100761 4557005 ~ 4558065 (+)
G59240 NA non-coding downstream 167271 4623515 ~ 4624154 (+)
G59247 NA non-coding downstream 188388 4644632 ~ 4668855 (+)
trnaq-uug_2 NA other upstream 4794 4432668 ~ 4432739 (+)
trnal-aag_1 NA other upstream 5280 4432171 ~ 4432253 (+)
G59172 sub1 other upstream 7552 4424141 ~ 4429981 (+)
G59086 NA other upstream 319902 4117279 ~ 4117631 (+)
LOC120560521 tjp2 other upstream 914777 3435165 ~ 3522756 (+)
mrpl41 mrpl41 other downstream 73810 4530054 ~ 4531165 (+)
LOC120560573 LOC104934257 other downstream 115139 4571383 ~ 4618033 (+)
fbrsl1 LOC103357558 other downstream 596989 5053233 ~ 5370868 (+)
golga3 golga3,LOC102797501 other downstream 991817 5448061 ~ 5469210 (+)
G59347 NA other downstream 1038911 5495155 ~ 5497754 (+)

Expression


Co-expression Network