LOC120560378 (st8sia3,LOC104919001,LOC100693561,LOC102785111,LOC102199258,LOC101477372)


Basic Information

Item Value
gene id LOC120560378
gene name st8sia3,LOC104919001,LOC100693561,LOC102785111,LOC102199258,LOC101477372
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29041940 ~ 29050224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802796.1
aggtGGTTGTGAttgtgctgctgctggtggacGGGGCTTGTCTTTTAGCTGGCTGCCTGTGTTGACACGCATTTCTGCTCCATCTCCATGATTAAACCGGCTGCCTGGAGGGGAGTCGCAGCGgagtgtgaagcagcagcagcagcagcagcagcaagaagcAGTCAGGAGGAATGAGAGCGGACCGAGTCGCGGCATCTTCACCATGCAGCCGACTAGCACCACCAGCCGTCCATTTTATACGATTATATGAGCCCATGAGAGCCAGTTTGTCTGTATCTTGCAGACAGGCAGCGTGCAGACCCGGCGATGACAACATAGGCCAACGCCTCGCTGCAGCTACATACAGGGAATGAAAACGCTCCCAAGATGGTCCGCATCGCCAAGGCCCTGGGTTTGGTTATTCTGTGCGTCGCTGTGCTCATACTGTCGCTCATCAGCTATGTGTCCCTGAGAAAAGACAGCCTCTTCACCTCCTCTAAATATTACATGGGAGGTCCGAGGATTATGTTCCACGCAGGATTTCGGTCTCAGTTTGCCATGAATTTCCTGGACCCCTCCTTCATCCCCTTAACTAACGCCCTGAATGAGGAGCTCCAGGGAAAACCGTCCAAATGGAGGTTCAACAAGACGGCTTTTTATCAGCAGAGgAAAGATATCTTCAGCTACATCGACATTCCCACCAACTTCTCCCTCACAAAGAACAGTGTGCGTGTTGGCCAGCTGATGCACTTTGACTACTCCAGCCACAAGTACGTCTTCTCCATCAGCAACAACTTGAAATCACTGCTCCCAGACACCTCTCCCATCCACAACAAGCATTACAGCATGTGTGCCGTGGTGGGCAACAGCGGCATCCTGACGGGAAGCCATTGTGGCCCAGAGATCGACCAGGCCGACTTTGTCTTCCGCTGCAACTTCGCCCCAACGGAGTTCTACTCCAAGGACGTGGGCAAGAAGACCAACCTGACCACCTTTAACCCCAGCATCCTGGAGAGGTACTACAATAACCTGCTGACCATTCAAGACAGGAATAATTTCTTCCTCAACCTGAAGAAACTGGAGGGAGCCATCCTGTGGATCCCTGCCTTCTTCCTTCATACCTCAGCGACAGTAACCAGGACCCTGGTGGACTTCTTTGTGGAGCACAAGAAACAACTGAAGATCGAACTGGCCTGGCCGGGAAACATCATGCACGATGTCAACAAATACTGGAAGACTAAAAACCTCTCCCCCAAACGTCTCAGCACTGGGATCCTAATGTACACGCTGGCCTCCGCCATGTGCGACGAGATCCATCTCTACGGCTTCTGGCCCTTCGGCTGGGACCCCAACTCGGGCAAGGATCTGCCTTACCACTACTACGACAAGAAAGGGACCAAATTCACCACCAAGTGGCAGGAGACCCACCAGCTGCCCAGCGAGTTCAAGTTGCTCTACAAGCTGCATAGAGAAGGCGTGATTAAACTCAGCCTGACCCACTGCTCTTAGACATACGATGGAGGGTTTTTAAGAGGTAACTTCAGAGACCCAGATACATCTGCTCAGCTCAAACGTCTGCTGTGACCCACAATGCATGAGAAGTGCTAAGGCAATttacgacaaaacacacactcacatcctgctgtaattttacatgaaaatgtcacagaCTTATCACAGCGTTGTTACTCATTTATCCGGTATATTGTTGTCTTCAGCACTACACAGTTAGGACGTTTTACGCTGCTCGGTTGCTTCCATTACTGTCCTGTGCATGGCTGCCGGCCGTGGCTAAACAGCTCAAACTATTTTAACTGGAGTTTGCAGGGGGATTCAAAACAAATAGTCGAATCGTCCAGTTGTGTTTAACACAGCATTGATTGAATAATCGCCTTTTAACAACAGTATACTGATTCTGTAGACAGAAATCACTGCCTAATCTCAGGGAAGGAGTTAGATCAGTGTTTATGTAATCAAATTTGATGCCTCAAGAGAGGAGCAGTTCCTGTTTCAGGCCTTTTTGCCCCCCCCATGAGGTGTCAGACAATCGGCACTGCTCTGGAAAATGGTATTTGTTTACAAGACTGTACCTGTAGACAGTGTAACTGTCCACTTCAAATTTTGTTGATTCTTAAAATTTTTTGAATAATATTTGACATTACAACAATAAGCCATAAATTCATGGACAATGGATAGTGTGTTGTCATTAAAATGCTGAATTATAGAAAGTGGTATTGACCTACATTAGGTTCGGAGActataagacatttaaaaatatcTTCCAACAAGACTACAAGTCTATAGCCACACTAGTGGCTACATTCAACTCACACAAACTTTGATTTTCCGAAACGAAAAAAATACCCAAATGTTGTTCACCAACACCAAGGTATTTCCTGAATCCTCAAAGCCTCTTCTAACCATCtggtttaaaaaatatttagtcCGTTTCCCAGGTTGCTATTGCAAAAATCTCCTTGATCTTTTACAACATGAGAAAAATTCAAACACGTTATTTCTTTGTGAAATTTTTAAATAATAGAAAGTACAAATTGAGCAAGGACATTTCTTGAGAGTCTTTGAGGATTCTGGAAATACCTTCAGAACAGTGTTAGGTTTTGTTGAACAATCTTctgattattgttttttttcagaaaatcaCATGCTTAGTTCTGTAAGTCAAATGTAATATCAAAACATGAGTCACAAACTGGGGCTTAGGTTGCACCGGCTATTCGTAAATCCATTACTGAGTTTGTGCATCATAATTAACTACGAGCTAGTTTTAAAATCAGGTTTGCAACTTTGCGGTGATGAAAAGATGTCAGGAAGTCACTGCTCCGGCTACCCATAAACTCGCTTTTTACACGCTTCTTTTGTACGAATTAAACAAACGAGATATAAAGTTTGAATTCGGAGCTTTTGGGGTTCCGTATTTTGTTATCTTCAGACAGAGCCAGATTAGCTGTTTCCTCAGTTTCCAGTTCATATgccaagctaagctaagctaaccggctgctggctcCAGTTTCATACTcaacatacagacatgagagcggTGTCGATCTTCTTAACTAACTTTCGCAAGTAAGCAAAGtagtgtatttcccaaactgTCAACGTATTCCTTTAAATCAAATATCTTAGCTAGTAAAGTAATTAATGTAGGCTGTAACATAGGCTAACTTCCAAAGGTTAAGGTTTTAGTGCGGGAAACAACTGCCAGtccttttaaatatgttttatatgttaaaTTAAGCGAGTAGTATTCATGAAGCTAGTAGTATTCATGCAGTTTAGCACAATTGGCAGATATCTGTTTATGCTAACTTATTATGATTCAGTCATTAAACGTTATTGGCATATCATTTTGTAATTTGAGGTATTTTTGTGAAGTGCAATTTAAAATATCCCAAGTTTACATTTTTGCACAGTTCAGATTTGTCAAATTCAATATAATCTTTTTTACTCTTAAATCTAAACAGGTCATATATAACCAACCAACTAGTTGGTGtaatgaaaaataattatttatttatttaataaacaaactaaGTTTGAATTTACGAAGAGCTGCAACCAGCTCCAGAAAACAAAAGGAAGAGACAATTTTACAATTCTAACCAAGAACCAGAGGGTACCAGACCATCTTGTGACCTAAATTGCGGCACTAGCGTGGCGAAAAACATCAGGAAATACAATATTTTGTTTGATCCTGAGGTTTACCActatttaaattataaaaaaagtacTAAGCAAGAGAATACAGTATGTATTATAGAGCTTTTGTTGACAATGGGAGGGTTAGTTATTTATTCATCATGTAACCATATTAATTCCAATATTTGTGACATAAAAcagagaatgaatgaatgttatATGACTTACTGCATCTAGTATGAAGAGCATGATCCATTTAAATGACATTGCATGTGAGGCACTAACAAATCTGTTAGGCTAGTTTTATACAACCTTTTTGAAGATTGTTGTGGGGTAAAAATGTAGTTctttgcatttgtgtgtattCCTAATGGTGTATTCCTTAAGACTATCACCAGTGTCTTTGTATGAGACGTTTCAAGGCTAACAAGAAGAACCCTAAAATATTCCACATGGGACCAAACCTCTACAGATCAAGTTAAAAATGAACAagctttattttttgtaattgtaGATAACCATGGGTTCTCAAAAACAATCCACCCCGTCATGCCAGACTGCAGTCTAGTGGATATGGGGAATTGAATGCTGGCCACATGACTCGTCTCATGACTCTGTAATGTGCTCCTTGTTGCAAACTCTGGCTGAGGTTTATAAAACAGAGCAATGCAGCCATTCACACTTACCAGATAGTAGCGTGTGCTTTTGTGCTCCTTCAGATTTAGCGTGGTAGGCCTTTGCCCGGCATCCCGTCCCACACAAAGCGTTTCTTTTTGTCAGTGTCCTTTACACAAGATGAATATTTCAGATGGTTAACTTTTGTGTCTCGTCTCCAAATCACAGTGCAGTCACCACCATGAAATCACATATCTGATGAAAAAGTTTGAATTTTAGGCAATTTAATTGATGTCATAGATGTGTACATTTAAGGATAATTTCTGTGGTCCCTTAGGAATGTTGTGTAGTTACACCAAAGACCATGCGCAAAGGAGAAATGTTAGCTTGATACAGACGGAGTTAGGATTTTGAAAGCTGTATGACAACTAACGACGACTATTATTGTATGAGAAATGGAGTATCCCTTTTTTGATGttgaatatcacattttgtggcacaaaaatccttttaaaacgttttgctttttttttttggcttcagCCAAAGTAAATTTATTTGTGACTCCATGAATGTCCTCCTATAGATCGATTAGTTTGATAAATCCACTGACATGAATGCAGGACAAGGATAAGTTCCTCTTTTAATGAAATCAAAATCAATGTGTAGAATGTGTGTAAACAATAATGATGCTAACAAAGTCTGTGAGGATTGTATTTTCAGTCAGAATAACAGTATAGCTTTTTGTGCATTACATAACCTAAACCTAAACATACAATGTCTTTATTCCAAATGcagcactatacaggatttgtTCCAACAACCCTTTAACATTCTTGTACTTGTGTTCGATCTGCATGGCAACTTGCATTAAAAACTTTGGCTGCTTATGTACATgtcgtaaaaaagtcataaatcaTGTAAGTGACTTTGCTATCTTGGTTGTTCTAACAAAAATTATCATCTACATAAGAAATATAACCAtgtcttaaatgttttttgatTATACTCCATGATAAATATATGTTATGTGCCTGCATATTCCTTCCATCAATGCCTcaatgtgtaaaataaaaacagtattttTCTCTGATATAACCCA

Function

symbol description
st8sia3 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Acts upstream of or within muscle cell cellular homeostasis and muscle organ development. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; nervous system; pleuroperitoneal region; somite; and unfertilized egg. Orthologous to human ST8SIA3 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3).

NR:

description
PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase

GO: NA

KEGG:

id description
K06613 SIAT8C; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802796.1 True 5359 mRNA 0.41 4 29041940 29050224

Neighbor

gene id symbol gene type direction distance location
LOC120560871 ccng2,LOC102294549,LOC100696397,LOC102783398 coding upstream 1111 29036015 ~ 29040829 (+)
zgc:158260 NA coding upstream 25015 29013606 ~ 29016925 (+)
LOC120560307 LOC103366435,LOC100706955,LOC101475748 coding upstream 62454 28963413 ~ 28979486 (+)
LOC120561296 LOC104963268,LOC101073255 coding upstream 86112 28940542 ~ 28955828 (+)
hint2 hint2,LOC102195764,LOC100691034,LOC101473821 coding upstream 103298 28934966 ~ 28938642 (+)
zgc:152968 NA coding downstream 10523 29060747 ~ 29072167 (+)
ptgs1 LOC103362336 coding downstream 153269 29203493 ~ 29214795 (+)
LOC120561007 NA coding downstream 170630 29220854 ~ 29223680 (+)
pmpca pmpca coding downstream 192498 29242722 ~ 29248901 (+)
LOC120560903 LOC103397900,LOC107386316,LOC108233556,LOC101070320,LOC106510880,LOC100705620,LOC101474073 coding downstream 208694 29258918 ~ 29260327 (+)
G65473 NA non-coding upstream 39760 28985613 ~ 29002180 (+)
G65418 NA non-coding upstream 225540 28816185 ~ 28816400 (+)
G65417 NA non-coding upstream 226464 28815254 ~ 28815476 (+)
G65396 NA non-coding upstream 275715 28766020 ~ 28766225 (+)
G65394 NA non-coding upstream 285747 28755865 ~ 28756193 (+)
LOC120560778 NA non-coding downstream 22717 29072941 ~ 29131216 (+)
G65565 LOC108233773,LOC103375797 non-coding downstream 28202 29078426 ~ 29098313 (+)
G65570 NA non-coding downstream 53764 29103988 ~ 29105609 (+)
G65710 NA non-coding downstream 497225 29547449 ~ 29614880 (+)
G65713 NA non-coding downstream 538783 29589007 ~ 29591364 (+)
mboat4 NA other upstream 192469 28845626 ~ 28849471 (+)
G65084 lipg other upstream 1670981 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 2002341 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 2380045 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 2397773 26614237 ~ 26644167 (+)
ubac1 ubac1 other downstream 294356 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 1136624 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 1196663 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 1523862 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 1807356 30857580 ~ 30893280 (+)

Expression


Co-expression Network