nr2f1a (nr2f1,nr2f1a,LOC107671052)


Basic Information

Item Value
gene id nr2f1a
gene name nr2f1,nr2f1a,LOC107671052
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16124488 ~ 16132946 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802850.1
tgcAGGGCTCTGGCCAGTCAGTCGCCTTTGATTATCAGTCTCCAGCAGCCCCTCTCTTGGCTCCTTGACATGAGCACCATATAAGGCGCAGCGATCTCCATAGAAACGTGTCAGTTTCAATAGTAGTGTCAAAGTTCACTATATACAGACATTCGCGCAGATCCCCCGTTTCGGAAACATTGCTCTGCTGGTCCTCCCGTTTAAGCGCATTCATTTTTGGGTCTCTCCTTCTTCTTGCATATTCTATTAGTTGTTGGTGTtggtcttctttttttaatcttttctctTCGTATCTCCATTCCTCCTGCTGGAGCGAGGTGAAACTATACATGGGCACTTCATTCGGCGACGCGGTTTTCTTTCGCTGCTGGGCGAGATGATGAGCTTTATTTAGTATATAGATGTAAAAATCCGGCTCTTCAGTTTTTCCTCCCCTCCTATACGGCGAAGACGGGAGTGTAAAGGAGCAaggggaagaaaagagaaaggaattTATCTCCGCAGCACTTTGGATCGCGTGTCTTTCCagcaaaaggttttttttttactcgttCCTGCGTCCATCTGATTCGCTCCTGCCTTTCCTTTGTGGCTATTTTATATCAAACTGCAATTTGTTACGACTGGACTCTTGTTTTCCTTCAAGATAGGGATTCCTGAATGGCTGGCTGCAATTTACCCTGGAACTGGCCTCCCGACACTTGCATATCCTGATCGGGTGCCTATTCAATCGCCCCcctgtattttgaatgtattGATCGCGTTGTACTCTCCTTCTTACCCCATATGAGATTGCGTGTTCCGATttgactttgcactgccccgTCTTTTCAgatctcatttttttctcctgtacGCTACATAAACACCGGCGATCATTTCGCTTTATAGCACTTTCAGGGGCCGAGATATGGCAATGGTAGTTAGCGTCTGGAGAGATCCGCAGGAAGACGTGGCCGGAGGACCTCCGAGCGGCCCCAACCCAGCAGCGCAGCCGGCGAGGGAGCAGCAGCAGGCGGCGTCGGCGGCGCCGCACACTCCGCAGACCCCCAGCCAGCCGGGACCCCCGTCCACACCGGGGACCGCTGGGGAAAAGGGGAGTCAGAATTCTGGACAGAGTCAGCAGCATATTGAATGTGTGGTTTGCGGAGACAAATCGAGCGGCAAACACTATGGCCAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGAGGAGTGTACGGAGGAACTTAACATACTCATGTCGTGCCAATAGGAACTGTCCCATTGACCAGCACCACCGAAATCAGTGCCAATACTGCCGGCTGAAGAAATGTTTAAAAGTGGGAATGCGGCGGGAAGCGGTTCAGCGAGGACGAATGCCTCCAACTCAGCCCAACCCAGGCCAGTACGCGCTGACGAACGGGGACCCTCTGAATGGCCATTGCTATCTGTCCGGATACATCTCGTTATTGCTGCGGGCCGAGCCTTACCCGACGTCCCGGTACGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATCTGCGAGCTGGCGGCTCGCTTGCTCTTCAGCGCCGTGGAGTGGGCAAGAAACATCCCTTTCTTTCCCGACCTGCAGATCACCGACCAGGTGTCCCTTCTCAGGCTGACGTGGAGCGAGTTGTTTGTGCTTAACGCGGCCCAGTGCTCCATGCCTCTGCATGTGGCCCCTCTGCTCGCCGCGGCGGGCCTCCACGCCTCCCCGATGTCCGCGGACCGCGTCGTGGCTTTCATGGATCACATCCGGATCTTCCAGGAGCAAGTGGAGAAGCTTAAGACCCTGCACGTAGACTCGGCAGAGTACAGCTGCCTCAAGGCCATCGTGCTTTTTACATCAGACGCTTGCGGCCTGTCGGATGCTGCTCACATCGAGAGCCTACAGGAGAAATCCCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGCCGCTTTGGGAAGCTCCTGCTGCGGCTGCCCTCTCTGCGCACCGTCTCATCGTCGGTAATCGAGCAGCTGTTCTTCGTCCGCTTGGTAGGTAAAACTCCTATTGAAACCCTCATCAGGGATATGCTATTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAATGATCCTAATatgaaagtggaaaaaaaaagaggaaaaaaggacCAAAATTCTGCACCCCTCACCCCATCCTCCTCCAAGAAGACTATATATAGGACCTTTTCTGAGAAACTTGGAAGacattactttttttctgtcttctgGGACTGAGATGGAATACATTATGTACAGAAAAATATTGGAACTGGACTTTACACCTGTGTAAATCCACCCTCATCGTCAAGAACAAtacttttcattttgtaaaatactagtctttattttcctttttttgtaaaaaatacaaataaaatgaaaaacatcaTATGCgcagtaagaaaaaaagaatcaagACTTAGCGggaaaataatgtttccaagcAATTATAAGAATTGTCCTGTGTCTATGTACCtctctgttttgtattttttctggTTCTAAACCAGGGTTTCTGTGATTCTATACTAATAATTTTTTGATATAACCTTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAAGCTATGTTCTCCAAGAattaaaattgaagtgagaatttaaaaacagaaaaataaagaaatttagACAAATAAGAAACAGTCTAATCGCTATGACAATATCACCACTGATGGTTGAACTTTTTCCCCAATTGATAACGATGGACCTGCAACAGCAGCAAACTGACCTCCAGGACATTTTTACTGAGAGGACGTCTGGGGCGCCTTTCCCCGGGCCATGAGTGCGTGTGGAGTCGATCATCAGTCAAAGAGGAGAGACATGAAAATCAAAAGCACTTTTAATATAtcatttcaaatacattttgtttgtttcgtCTTGAAAATTTTCATTGTTTCTTGAATTTTATTGGTTGTTGCCTTCAATTTGCTTACTCCATGATGCAGCTTTTTGCAGAAGGGTCGGTTGATGAAGTTGTGTGATGGTGACTGtactattaaaaaaagaaataggcaACAATG
>XM_039802851.1
tatgcAGGGCTCTGGCCAGTCAGTCGCCTTTGATTATCAGTCTCCAGCAGCCCCTCTCTTGGCTCCTTGACATGAGCACCATATAAGGCGCAGCGATCTCCATAGAAACGTGTCAGTTTCAATAGTAGTGTCAAAGTTCACTATATACAGACATTCGCGCAGATCCCCCGTTTCGGAAACATTGCTCTGCTGGTCCTCCCGTTTAAGCGCATTCATTTTTGGGTCTCTCCTTCTTCTTGCATATTCTATTAGTTGTTGGTGTtggtcttctttttttaatcttttctctTCGTATCTCCATTCCTCCTGCTGGAGCGAGGTGAAACTATACATGGGCACTTCATTCGGCGACGCGGTTTTCTTTCGCTGCTGGGCGAGATGATGAGCTTTATTTAGTATATAGATGTAAAAATCCGGCTCTTCAGTTTTTCCTCCCCTCCTATACGGCGAAGACGGGAGTGTAAAGGAGCAaggggaagaaaagagaaaggaattTATCTCCGCAGCACTTTGGATCGCGTGTCTTTCCagcaaaaggttttttttttactcgttCCTGCGTCCATCTGATTCGCTCCTGCCTTTCCTTTGTGGCTATTTTATATCAAACTGCAATTTGTTACGACTGGACTCTTGTTTTCCTTCAAGATAGGGATTCCTGAATGGCTGGCTGCAATTTACCCTGGAACTGGCCTCCCGACACTTGCATATCCTGATCGGGTGCCTATTCAATCGCCCCcctgtattttgaatgtattGATCGCGTTGTACTCTCCTTCTTACCCCATATGAGATTGCGTGTTCCGATttgactttgcactgccccgTCTTTTCAgatctcatttttttctcctgtacGCTACATAAACACCGGCGATCATTTCGCTTTATAGCACTTTCAGGGGCCGAGATATGGCAATGGTAGTTAGCGTCTGGAGAGATCCGCAGGAAGACGTGGCCGGAGGACCTCCGAGCGGCCCCAACCCAGCAGCGCAGCCGGCGAGGGAGCAGCAGCAGGCGGCGTCGGCGGCGCCGCACACTCCGCAGACCCCCAGCCAGCCGGGACCCCCGTCCACACCGGGGACCGCTGGGGAAAAGGGGAGTCAGAATTCTGGACAGAGTCAGCAGCATATTGAATGTGTGGTTTGCGGAGACAAATCGAGCGGCAAACACTATGGCCAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGAGGAGTGTACGGAGGAACTTAACATACTCATGTCGTGCCAATAGGAACTGTCCCATTGACCAGCACCACCGAAATCAGTGCCAATACTGCCGGCTGAAGAAATGTTTAAAAGTGGGAATGCGGCGGGAAGTTCAGCGAGGACGAATGCCTCCAACTCAGCCCAACCCAGGCCAGTACGCGCTGACGAACGGGGACCCTCTGAATGGCCATTGCTATCTGTCCGGATACATCTCGTTATTGCTGCGGGCCGAGCCTTACCCGACGTCCCGGTACGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATCTGCGAGCTGGCGGCTCGCTTGCTCTTCAGCGCCGTGGAGTGGGCAAGAAACATCCCTTTCTTTCCCGACCTGCAGATCACCGACCAGGTGTCCCTTCTCAGGCTGACGTGGAGCGAGTTGTTTGTGCTTAACGCGGCCCAGTGCTCCATGCCTCTGCATGTGGCCCCTCTGCTCGCCGCGGCGGGCCTCCACGCCTCCCCGATGTCCGCGGACCGCGTCGTGGCTTTCATGGATCACATCCGGATCTTCCAGGAGCAAGTGGAGAAGCTTAAGACCCTGCACGTAGACTCGGCAGAGTACAGCTGCCTCAAGGCCATCGTGCTTTTTACATCAGACGCTTGCGGCCTGTCGGATGCTGCTCACATCGAGAGCCTACAGGAGAAATCCCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGCCGCTTTGGGAAGCTCCTGCTGCGGCTGCCCTCTCTGCGCACCGTCTCATCGTCGGTAATCGAGCAGCTGTTCTTCGTCCGCTTGGTAGGTAAAACTCCTATTGAAACCCTCATCAGGGATATGCTATTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAATGATCCTAATatgaaagtggaaaaaaaaagaggaaaaaaggacCAAAATTCTGCACCCCTCACCCCATCCTCCTCCAAGAAGACTATATATAGGACCTTTTCTGAGAAACTTGGAAGacattactttttttctgtcttctgGGACTGAGATGGAATACATTATGTACAGAAAAATATTGGAACTGGACTTTACACCTGTGTAAATCCACCCTCATCGTCAAGAACAAtacttttcattttgtaaaatactagtctttattttcctttttttgtaaaaaatacaaataaaatgaaaaacatcaTATGCgcagtaagaaaaaaagaatcaagACTTAGCGggaaaataatgtttccaagcAATTATAAGAATTGTCCTGTGTCTATGTACCtctctgttttgtattttttctggTTCTAAACCAGGGTTTCTGTGATTCTATACTAATAATTTTTTGATATAACCTTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAAGCTATGTTCTCCAAGAattaaaattgaagtgagaatttaaaaacagaaaaataaagaaatttagACAAATAAGAAACAGTCTAATCGCTATGACAATATCACCACTGATGGTTGAACTTTTTCCCCAATTGATAACGATGGACCTGCAACAGCAGCAAACTGACCTCCAGGACATTTTTACTGAGAGGACGTCTGGGGCGCCTTTCCCCGGGCCATGAGTGCGTGTGGAGTCGATCATCAGTCAAAGAGGAGAGACATGAAAATCAAAAGCACTTTTAATATAtcatttcaaatacattttgtttgtttcgtCTTGAAAATTTTCATTGTTTCTTGAATTTTATTGGTTGTTGCCTTCAATTTGCTTACTCCATGATGCAGCTTTTTGCAGAAGGGTCGGTTGATGAAGTTGTGTGATGGTGACTGtactattaaaaaaagaaataggcaACAATG

Function

symbol description
nr2f1a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within circulatory system development and endothelial cell proliferation. Predicted to be located in nucleus. Is expressed in several structures, including basal plate midbrain region; cardiovascular system; mesoderm; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in Bosch-Boonstra-Schaaf optic atrophy syndrome. Orthologous to human NR2F1 (nuclear receptor subfamily 2 group F member 1).
nr2f1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in Bosch-Boonstra-Schaaf optic atrophy syndrome.

NR:

description
PREDICTED: COUP transcription factor 1 isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802850.1 True 3100 mRNA 0.48 3 16124488 16132944
XM_039802851.1 False 3099 mRNA 0.48 3 16124488 16132946

Neighbor

gene id symbol gene type direction distance location
slf1 slf1 coding downstream 313068 15777243 ~ 15811420 (-)
fam81b NA coding downstream 489982 15622929 ~ 15634506 (-)
LOC120560939 NA coding downstream 502260 15615792 ~ 15622228 (-)
LOC120560853 NA coding downstream 522217 15591345 ~ 15602271 (-)
LOC120560852 NA coding downstream 534052 15581292 ~ 15590436 (-)
aqp3a LOC103362379,LOC108242818 coding upstream 379431 16512377 ~ 16519316 (-)
nol6 nol6 coding upstream 398706 16531652 ~ 16546472 (-)
LOC120561320 NA coding upstream 414335 16547281 ~ 16548567 (-)
LOC120560423 rasa1 coding upstream 889592 17022538 ~ 17055682 (-)
LOC120560528 vcan,LOC102793126 coding upstream 1349694 17482640 ~ 17535168 (-)
G61998 NA non-coding downstream 24105 16096421 ~ 16100383 (-)
G61996 NA non-coding downstream 141077 15982876 ~ 15983411 (-)
G61993 NA non-coding downstream 185240 15937976 ~ 15939248 (-)
G61956 NA non-coding downstream 347350 15773679 ~ 15777138 (-)
LOC120560849 NA non-coding downstream 580137 15541832 ~ 15544351 (-)
G62065 NA non-coding upstream 372324 16505270 ~ 16506122 (-)
LOC120561369 NA non-coding upstream 374100 16507046 ~ 16508251 (-)
LOC120561239 NA non-coding upstream 430524 16563470 ~ 16564460 (-)
G62103 NA non-coding upstream 476627 16609573 ~ 16663861 (-)
G62104 NA non-coding upstream 477531 16610477 ~ 16620203 (-)
LOC120560838 NA other downstream 722164 15369026 ~ 15402324 (-)
mfsd14bb LOC103398013,LOC102210719 other downstream 846304 15252615 ~ 15278184 (-)
LOC120560831 NA other downstream 891795 15224970 ~ 15232693 (-)
sdhaf1 sdhaf1,LOC102800057 other downstream 906066 15216550 ~ 15218422 (-)
tti2 tti2 other downstream 1083108 15029876 ~ 15041380 (-)
LOC120560105 LOC103362503 other upstream 19474 16152420 ~ 16452488 (-)
G62064 NA other upstream 371680 16504626 ~ 16505067 (-)
LOC120561322 NA other upstream 415671 16548617 ~ 16551175 (-)
LOC120560425 NA other upstream 950533 17083479 ~ 17085821 (-)
G62194 NA other upstream 991050 17123996 ~ 17124477 (-)

Expression


Co-expression Network