LOC120560407 (ttc28)


Basic Information

Item Value
gene id LOC120560407
gene name ttc28
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39449933 ~ 39841426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802872.1
ATTTAGTGCGCGTGCGAGGTGCCACTTCTTCATCTTCGCCCCCGCCCTCGCAGAGTCTGTGAACGCCTCGAACCGAAAGTTAGCTAACATTTGCTTTGAATGTCACTTTATAATTGGCTCCCATACATACGGCTCCACGCCTCTCTCTGTGTACAGCGCTCAGAAATCCGCTATGGCAACAGGGGGAgaaaaaagacaggaaaaaaaaggaaaagatttGACAACATGGCGCACTTTCCTTAAGAAAAGTTTCTCCTGGACGCCACACAGCTCAGTCTTTGTGGATTTTCTCGCAGTTTGTCGACACTCGTGCCACACAAGAGGACTCTTGTGCTAACTTTTGAACACCTTTTGGATGCGTAAAGTCGATTTAAAAAGCCAGGAAAGGAGGAGTGTGAAGGGATGAGAGCGAGAACCCGCCGCACAAACCGAAGCAGTCACACAGGATGGAGAAGCAAGCGACTCTGAAAGAAAAGTTTTCCATCTTGAGTTCTCGGACAGCGGGCAGACATCTCCGCTGTGTTTCTGGAGACGAAGGAGCCAGGTTTGGTCTCAGCAAAGCCGAGTTCATGGAGAAAGTGCAGCAGAGCAACGAGGCGTGTCAGCGGGGGGACTTCCAGGCGGCCGTTTATTTGTACACTGATGCCTTGCGAGCGGACCCACAGAACTGCATCCTGTACAGTAACCGGTCAGCAGCGCTTCTCAAACTTGGACAACACCAGGCGGCGCTGGACGATGCTGGAAAAGCCTGCGAGCTCAATCCCAAGTGGCCCAAGgcATACTTCCGACAGGGTGTTGCCCTTCAGTACCTTGGCCGCCATGCCGACGCACTGGCCGCCTTCGCCTCCGGGCTGGCCCAAGACCCCAAGAGCCTGCAGCTGCTGGTGGGCATGGTAGAAGCCGCCATGAAGTCGCCGTTACGAGAGTCTCTGGAGCCCACCTATCAGCAGCTGCAAAAGATGAAGCTGGACAAAAGTCCCTTTGTGGTGGTGTCTGTGATTGGCCAGGAGCTGCTGACAGCGAGCCACCACACCGCCTCTGTTGTGGTGCTCGAGGCCGCTTTGAAGATCGGCACGTGCAGCCTCAAGCTCCGCGGCTCGGTCTTCTCGGCCCTCAGCAGCGCCCACTGGTCCCTGGGCAACACGGAGAAGAGCACCGGCTACATGCAGCAGGACCTGGAGGTCGCCAAGACCTTAGGTGACCAAACAGGGGAATGCCGTGCTCATGGGAATCTGGGCTCGGCATTCTTCTCCAAGGGAAACTACCGCGAAGCGCTGACCAACCACCGCAACCAGCTGGTTCTGGCCATGAAGCTAAAGGACAGAGAGGCTGCTTCCATGGCGCTGAGCAGCTTGGGCCATGTGTATACAGCCATCGGGGACTACCCGAACGCCCTGGCCAGCCACAAGCAGTGTGTCCTGCTGGCCAAGCAGTCCAAGGATCAGCTGTCTGAGGCCCGCGAGCTGGGAAACATGGGCGCCGTCTATATTGCCATGGGAGACTTTGACAACGCCGTGCAATGCCATGAGCAGCACTTAGGCATCGCCAAGGCCCTGGAGAACAAACGAGAGGAAGCCCGGGCGTACAGTAACCTCGGCAGCGCCTACCACTACCACCGTAACTTCGACAAGGCCATGTCCTACCACACGCACGTTCTGGAGCTGGCCCAGGAGCTGGAGGAGAAGTCCATCGAGATGAGAGCCTACGCAGGACTTGGTCACGCTGCTCGCTGCATGCAGGACCTGGAGAGGGCCAAGCAGTACCACGAACAGCAGTTGTCTATAGCGGAGGGACTGAAGGACAGGGCTGCAGAGGGAAGGGCCTCCTCCAATCTGGGCATCATCCACCAGATGAAGGGGGACTATGAGACGGCACTGAAACTCCACAAAACTCACCTGGCCATCGCTCAGGAGCTGAACGACTACGCTGCTCAGGGCCGGGCCTATGGCAACATGGGTAATGCCTACAACGCCCTGGGAGCCTTCGACCAGGCGGTCCGCTACCACCGGCAGGAGCTGCAGATCTCCATGGAGGTCAACGACCGGGCCTCGCAGGCCTCCACCCACGGCAACCTGGCGGTGGCTTACCAGGCGCTGGGCGCCCACGACCGCGCTCTGCAACACTACCAGAACCACCTCAACATCGCCCGGGAGCTCCGGGACGTCCAGAGCGAGGCGCGCGCTCTGGGCAACCTCGGCAACTTCCACTGCTCTCGCGGAGAGTTCCCTCAGGCAGTGCCCTACTACGAGCAGTACCTCCGCCTGTCCCCGGACCTCCAGGACATGGAGAGCGAAGGGAAAGTTTGTCACAATCTGGGTTATGCCCACTACTGTCTGGGCAACTACCAGGACGCGGTGAAATACTACGAGCAGGACTTAGCCCTGGCCAAGGACCTGCACGACAAACTGAGTCAGGCCAAGGCGTACTGTAACCTCGGCTTGGCGTTCAAAGCCCTGGGAGACTTCACCAAGGCGGAGGAGTGTCAGAAATACCTGCTGTCCCTGGCACAGTCGCTCAACAACGCACAGGCTCGCTTCCGAGCTCTGGGGAACCTCGGAGACATCTTTGTCTGTAAGAAAGATGTGACTGGAGCCATTCAGTTTTACGAGCAGCAACTGGCCTTAGCTCACCAGGTTAAGGAGCGCAGGATGGAGGCCTGCGCCTACGCCGCCCTCGGGGCCACCTACAGACTTGTGCAGAAGTACGACAAAGCTTTGGGCTACCACACCCAGGAGCTGGAGGTGTACCAGGAGCTGGGCGACGTGTCGGGGGAGTGCAAAGCCCACGGTCACCTGGCAGCCGTCTACATGGCCCTGGGGAAGTACGCCATGGCCTTCAAGAGCTACGAGGAGCAGCTGGAGCTGGGCCGGAGGCTGAAGGACCCTGTGGTGGAGGCTCAGGTCTACGGGAATATGGGCATCACCAAAATGAATGTAGGCGTGATGGAGGAAGCCATTGGCTACCTGGAGCAGCAGCTGGCCACGTTACAGCAGCTGAGTGGGAACGAGGCGGTGATGGACAGGGGCAGGGCCTACGGGAACCTGGGGGACTGTTACGAGGCTCTGGGAGACTTTGAGGAAGCCATCAAGTACTACGACCAGTATCTGTCGGTGGCCCAGAGCCTCAACCGCATGCAGGACCAGGAGAAGGCCTACAGCGGCTTAGGCAACGGACACAGGGCCATGGGAAACCTGCAGCAGTCGCTGGTGTGTTTTGAGAAGCGGCTCGTTGTGGCCCATGAGCTGGGCGAGTGTGGAGGCAAGGCTCAGGCCTACGGTGAACTGGGCGCGCTGCACAGCCAGCTGGGAAATTACGAGCAGGCCATCTCGTGTCTGGAGCGCCAGCTGGCCATCGCCCGTGACACCCGGGACAGACTACTGGAGGGCGACGCCAGCTGCGGCCTGGGCGCCGTGTATCAGTCTATGGGAGAGTACGAGACGGCCTTGCGCTGCCACCAAAGTGACCTGGAGATCGCCGAGGAGGCGGGCAGCCCCACGCGCCAGGCCCGCGCTTACGGGAACTTGGGCCTCACCTACGAGTCGCTCGGAAACTACGAGCGGGCGGTCGTGTTCCAGGAACAGCACCTGAGCGTGGCGGCTCAGACTAATGACTTGGCTGCCAAGACACTGGCCTACGGCAGCCTGGGGAGGACACACCACGCTCTGCAGAACTACTCGCAGGCTGTCATGTACCTGCAGGAAGGCGCCTCCGGCGCTTTCGCCGAGCAGCTGGTTCGGCGGGAGGACGAGGCGAAGATCCGCCATCGTCTCGGGCTCTCTCTGTGGGCCAGTGGGAACCTGGAGGAGGCCCAACATCAGCTGTACCGGGCCTCCGCTCTGTTTGAGACCATCCGCCACGAAGCCCAGCACAGCAcggactataaactctccctGTTCGACCTGCAAACCTCCTGCTACCAGGCACTCCAACGGGTCCTCGTCAGCCTAGGCCACCACGACGAGGCTCTGGCGGTGGCGGAGCGCGGGCGGACGCGAGCCTTCGCTGACCTCCTGGTGGAGAGGCAGACGGGCCAGCAGGACTCGGACCCCTACACCCCGGTGACGGTGGAGCACATCCTGGACACGGTCAACAGCCAGAGGGCCCTGGTGCTGTATTTCTCCATGGCTGCTGGTTACCTGTACAGCTGGCTGCTGGCTCCAGGAGCAGGCATCCTGAAGTTTCATGAGGTGTACCTGGGCGAGGGCGTGTCAGACGGAGGCTCAGACTTCCAGGAGGGGGGGGGCAGCGGCGGCGGCGGGGTGGTCAGCGGCTCCTCGTTGGAGCAGCACATCGCCAGCGCCCGCGAGGCTCTGGGAGTAGAGTCTTACTACAGCAGagGGTGTTCGAGCAGCGAGACGGAGAGCGAGGCGGGAGATTTGTTGGACCAACAATTTGAGGAGCTCAACAACAAGCTTAACTCCGTCACTGATCCAACAGGCTTCCTGCGCATGGTGTCCAGAAACAACCTGTTCAACAGgAGTTGCCAGAGCATGACCAGCCTGTTCAGTAACACCATGTCACCTGCCAAAGACGGGAACTCTTCGCTGCCTCGTCGCTCCAGCAACCTCGGAAAGCCTCCGCTGCGGGCCCTTTATGATCTGCTCATTGCGCCTATGGAGGGGGGCTTGATGCACTCCAGCGGGCCCGTCGGCAGACACAGACAGCTGGTGATGGTGCTGGAGGGGGAGCTGTACCTCATCCCCTTCGCTTTGCTCAAAGGAAGCTCGTCCAACGAATACCTGTACGAGCGCTTCAGCCTCATCGCTGTTCCCTCCATCCATGGCCTTGGAACCAGCGCAAAGGCTCACTCCCGGCGCCCTGGACCGGCTCCATGTGGCGGTGTCTCGATGGCAGCGGTGGTGGGGAACCCTCGCCTGCCCTCGCCCGTGATGGACCGCTGGCTGTGGGGACCCATGCCCTCTGCAGAGGAGGAGGCCCTGATGGTGGCTGAGCTGCTGGGCTGCCAACCGCTGGCCGGCACTGCTGCCACCAAGGAGCGGGTGATGAGTGCCCTCACACAGGCCGAGTGTGCCCACTTTGCCACCCACATTTCCTGGAAACTAGCGGCTCTGGTGCTCACCCCAAACCCTGAGAGCGTGCCCGGTGGAGCAGGCGCCAACGTGGGAGTTGGGACCGTGGGGAGAGGTGCAGGGGGGAGAAGAGGCAGCAGTGGCCGAGGCAGGAAGGGCTCCATTGGAAGCGGCTACACCATCCCCGAGTCTCTTCACATGCAGGACGACAGCAGTGACGTGGAGAGCATATGTGACAGCCCGCCCCTGCAGGAGTTCCTGCTCACAGCTGCGGATATATTGGACCTGAGGTTGCCCGTCAAGCTGGTGGTGCTGGGGTCGTACCAGGAGTCCAGCAGCAAAGTGACAGCAGACGGTGTGGTGGGACTGACCAGGGCCTTCCTGGCTGCCGGGGCTCAGTGCGCTCTCGTGTCCCTGTGGCCTGTCCCCGTCGCGGCCTCCAAAGTGTTTGTCCACGCCTTCTACACCGCGCTGCTCAACGGGACCAAGGCCAGTGCAGCGCTGGCGGACGCCATGAAGACCGTCCAGAGCAGCAAGCAGTACTCGCACCCCTCCAACTGGGCAGGATACATGCTGATTGGTAATGATTAACATTTCAGAATGAAGTATTCAGAGACTTTCTCACAATACAAAATGTCACAACCCAAGATGCGCAGATATGCTGACGACGCTGCACTTCGCTGGTACTTGCAGGTGGAGAAGTCCCTTCAGAGGATACAGAACGGCCAGCGTAACTCCATGTATACGTCCCAGCAAAGTGTGGAGAACAAGGTGGGGGGTGTCCCTGGCTGGCAGGCGCTGCTGACCGCTGTGGGCTTCCGTCTGGACTCGGTGGGCAGCGGTATGCCCGCTGCGGTCTTCTTTCCCACCGCTGATCCCGGGGACAGGCTCCAGCAGTGCAGCACCACTTTACAATCCCTGCTGGGTCTGCCGCCGCCCGCTCTCCAGGCTTTGTGCAAACTCATCACAGCTTCAGAGGCAGGGGAGCAGCTCATCAATCGGGCTGTTAAAAATATGGTGGCAATGctCCACCAGGTGCTAGTCCAACTCCAGACGGGAGAGAAAGAACAGGATTTCTCCCTCCTGCCCATTCAGGTGTCCATCAGCGTGCAGCTCTGGAGACTGCCAGGGTGCCACGAGTTCCTGGCTGCTCTCGgattTGACTTATGCGAGGTCGGCCAGGAGGAAGTGGTGCTGAAGACCGGCAAGCTAGCCAACCGCCGCACCCTGCACTTTGCACTCCAGTCTCTGCTGGCGCTGTTTGACTCCACCGAGCTTCCCAAGCGTCTGAGCCTGGACAGCTCCTCTTCCCTCGAGTCTCTAGCCTCGGCCCAGTCCGTGTCCAACCCCCTGCCCACGGGGTACTCCAGCCTGCCCTTCTCCCCCCCGTGCCTGGACAGTCAGGCCTCGGACGCCATCTCCGTCTACAGCCTCAGCTCCGTGGCCTCCTCCATGAGCTGCGTTTCCAAGTCCGAGTGCGATTTCCTCGGCCATCGGCAACGAGGCGGCGCCACGGCGCACTACTCCGTCCACAAACACCCGCACGTTCCTCGGAGCCGCTCGTCGCCTCACggggcggctgctgctgctgcggcggTGGCGGCGGCCGCGACAGGGGCCCGCGGGGAGGACGAGGAATACGAGGGATTTTCCATCATCAGCAGCGAACCGCTGGGAAGCCACTGCGACTCTTTGCCGCTGCCGCCGGGCCACAGCCAGCGGCACCACCGCGGCGGCAGGGGAGTCGTGGGTGGGTCCAGCTCAGGAGCAGGGAGAGGCTACACCGTATCGGTATCGTCCAGGGGCAGCGTCAGCACCCCCACGTCCCCTGTTAAAACATGCCTGGTGCCCAGCCCGAACTCCCCGTTCCAGAAGGTAAAGGGTAAGGTGAGCAGCTCGGATACGGGCGAGTCGGACCAGTCCAGTACCGAGACGGACAGCACTGTCAAGTCTCAGGAAGAAAAAACTGTCCCTCTGGATCCTCAGGAGCTGGCCCAGAAGATCCTGGAGGAGACCCAGAGCCATCTGCGGGCCGTGGGGAGCCTCCAGCGGGCCGGGCCCGAGGGAGCGACAGCCGGAGGAACCTCGGCGCGGAGCAGCGCTTTCCGCTCCTCCGAAACCAGCGCGTTCAGCCGCCCCAACAGCAGCGCCGGCGGCCGAGCTCAGTCGTCCCCGAGGCCCAAACCGCCCTCCCGTTCCTCGTCGCTGCAGAAGATAAGCTCCGGCTACAACAGCCCCGCGATCTCCGAGTCTTCCCAAAAGGAGGGCAGCCATCCTTCGCCCACTCTGGACAGCCACGCGCAGTTCCGATTAAAGTACCCGAGCTCCCCGTACAGCGGCCACATCTCCCGCTCCCCGAGTAACGTGTCTCCCAGTTCGGGTCACCAGTCCCCGGCCGGCAGCGCTCCGTCCCCGGCGCTGTCGTACTCCTCCACGGGCTCCGCCTGCTCCACGTCGGCCGACCAGGTCCCAGACCTGGACCGGCTAAGACGAGGCGTCATCGACGAGAAAGTCCAAGCGATCCACAATCTGAAGACCTTTTGGGCCAACGCCGCGGCCCAGCAACAGCAACACCTGGGTCCCGTCAGAGCCGTCCACGGCGGTCCCGGGTCCCTCGCCTCGGCCGGCAGGGACGTGCTGAGCCTCCTGAACCTCTCTCCGCGCCGCTGCTCGCCCAACGATACCCAAGACAGCCTGGAGCTGCGGGAGCTGGGGCTGCAGTCACTAGACAGGGGGGGCAAGAACTCCTCCAACGGACACCACTGCTCCAACGCCAGAAAAGTGGCCCCGTCGCCGACCATTTCCACACGCAGCAGCCCCGGCGCTCGTTCTATCCGACTACCTGCCGGAAACGGATACAAGTTCCTGTCGCCTGGAAGGTTTTTCCCTTCCTCTAAATGctgagacatttaaaaaaaaataaaaattaaaaaacggTTCAATACTTTAATCTAACGGTTACTTTTCCTGTGTGCTGGAGGAGTAGGGGCACTTTTTTGGGGACCAGTCTCGGTCCGAGCCGAGCTTGACTGAAAGGATTTGATTGGTCAGTGAGTGTGATGCTGCAGAGGCACATGGATGCTTAAGAGcgtgtctttgtctttgtgccCATAACACTGTAAATGGGGAATGAGAAATACTCTACGACCTgatactgtgtttgtgtgtaactgtgtgtcaGGTAGATGTAAATGCCATTTGGTAtttcacccccccccaccccctccctccctcccaccagCCCACCCTCTTCTCTAAAATCTTCGCTGTTTGTGTTGGGCCAAGACGCATCAGCTATGACTGATTTCCTCCattctattttgttttgaaatttaatggttattgttattattgtttgttattgttattaatattataataataattattattatgttttgtaAATTAATTGCAGTGTTTCACAATCAGTATTAAGcgtttttatattattaaaaaGTGAACAAACCGTGTAAAGATGGAtagagtggggggggggaaagatttaatattttttattgaaatcaAAAGGGCATTTTGCCTGATTTCTTTGTGAATTGAGTGTCTGCTCCGACGCATGGATTCTCTTGCTATTCAATGTTAAGTACCATGTATGACCTTTTTAGCCCATGATTTTTTGAGATTAAACATGAAAGTTCCATGACAACCATCTGTCATTTATCAGTAAActgtttcaataaaaaaaaacatcatgtttG

Function

symbol description
ttc28 Acts upstream of or within microtubule polymerization or depolymerization. Is expressed in blastomere and nervous system. Orthologous to human TTC28 (tetratricopeptide repeat domain 28).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28

GO: NA

KEGG:

id description
K24936 TTC28; tetratricopeptide repeat protein 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802872.1 True 8746 mRNA 0.59 26 39449933 39841426

Neighbor

gene id symbol gene type direction distance location
mn1b mn1,LOC102781903 coding downstream 55111 39366677 ~ 39394822 (-)
zgc:153044 LOC104946530 coding downstream 601980 38845687 ~ 38847953 (-)
ube2d4 LOC104946535,LOC101482088,LOC101172587,LOC101069170,LOC108236573,LOC107393720,LOC103397347,LOC104935329 coding downstream 776041 38662069 ~ 38673892 (-)
dbnlb dbnl,LOC102783933 coding downstream 792399 38637016 ~ 38657534 (-)
arid5a NA coding downstream 829470 38600352 ~ 38620463 (-)
LOC120560309 hectd4 coding upstream 45177 39886603 ~ 39997858 (-)
LOC120559991 rph3a,LOC101477332,LOC102779512,LOC104921713 coding upstream 199944 40041370 ~ 40131231 (-)
dpysl2a LOC100711297,LOC102201039,LOC101475506 coding upstream 380103 40221529 ~ 40269220 (-)
bnip3la LOC100711031,LOC102292245,LOC101477054,LOC103356614,LOC102193827 coding upstream 436634 40278060 ~ 40291575 (-)
ciao1 ciao1 coding upstream 801303 40642729 ~ 40651595 (-)
LOC120559961 NA non-coding downstream 281370 39162719 ~ 39168563 (-)
G67996 NA non-coding downstream 316064 39133038 ~ 39133869 (-)
G67986 NA non-coding downstream 483924 38965753 ~ 38966009 (-)
G67976 NA non-coding downstream 532486 38826670 ~ 38917447 (-)
G67972 NA non-coding downstream 623962 38825291 ~ 38825971 (-)
G68706 NA non-coding upstream 41619 39883045 ~ 39883634 (-)
G68715 NA non-coding upstream 72961 39914387 ~ 39971420 (-)
G68686 NA non-coding upstream 204269 40045695 ~ 40128272 (-)
G68730 NA non-coding upstream 211676 40053102 ~ 40111807 (-)
G68733 NA non-coding upstream 226651 40068077 ~ 40110678 (-)
LOC120560036 NA other downstream 1105137 38336088 ~ 38344796 (-)
G67577 NA other downstream 1895166 37535859 ~ 37554767 (-)
G67523 NA other downstream 2104850 37344461 ~ 37345083 (-)
adrb3a adgra2,LOC104963277 other downstream 2123532 37229742 ~ 37326401 (-)
G67483 pdlim2,LOC104963286,LOC103470528,LOC100702294 other downstream 2298287 37098792 ~ 37151646 (-)
G68717 NA other upstream 93946 39935372 ~ 39935846 (-)
LOC120560061 NA other upstream 158580 40000006 ~ 40026743 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 471943 40313369 ~ 40330695 (-)
G68952 NA other upstream 1082648 40924074 ~ 40950607 (-)
G68985 NA other upstream 1234579 41076005 ~ 41077465 (-)

Expression


Co-expression Network