gkap1 (gkap1,LOC102779162)


Basic Information

Item Value
gene id gkap1
gene name gkap1,LOC102779162
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21661703 ~ 21672091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802950.1
TTTAAAGCGAAAGGGCGATCAGCGATCGATGTTATCCTTTTTGGCACCACCGGGCAGCTGTACTCAGGCAATTGCTGATAGCAAACCAACAGTAGCCGACAGCACCTTCACGAACAGTTAACGTTAGTTTTCCTTTTCGAAATGGCATCGTCTGCAATGATCACCGTCCCCACCACCGCCTCCCGCTTCGCCTTGCTCCAGATAGACTCGGATTCGGACTCCGACGCCTCCGATGCGGGAAAGACCACCACCAAAGCCGGACCGAAGCCCCGACAAGGGAAGGCAGGCGCAGCCGGGGGGAAAGCAGCTCAGTGCAACGACAAGaagaaagacaagaaaaagaagaagaaggaacagcagcagactgaggcaAATGAGTTACGTAATCTGGCCTTCAAGAAGATTCCTCAGAAGTCTTGTGCCCCGCCTCCCTCTATGACCCTGTCAGGAATAGCCGGTGAACTTCTCAGTCCTGCATCAGGGGACCACCCTATACCTTCAGAGGGGTGGCAGCAGTGGAAGCAGAGGGACGAGCAGATAACCTCTGAGCTTTATGAGGCTGACTTGGAAAAAGCCTTGATTCTAAGTAAACTGGAGTATGAACAAAACAAACCGCTCAACAACACAAACGCATCCTCACAGAAGGCACCTGGAGGAAAAGAGGGCGGAGGGAAGAAGGACAAAAAGAAGAATCAGCAGGCAAAAGATAAAAAGACagtttcactgcaggacttccAGGCTGAAGGCAGTGCAGAGCATTTGAGTAAGAAACAAGAGAAAGAGGACGGCAGAGTGGCTAATGTAGCGTTGAGAATTGGGCAGGAGGAGCGTTTTTTTAACAAGCTCGAGGATGACGTCACTCGGATTGTCCAACAGGAGAAGAGACGGGAGCAGTACACCAACAGTCATGGACAAGAAGTCGTCTCAATAGAGCACGAACGGGACCCCCGAGCAGAGCAGCTGAAATACGATCTGGAGAAGAAGGACGAGGAAATTGATAAGCTAAAGAAGAACATCTCACAGTGGGAGGGGAAATACAGAGATGTAAAAACAAGAAATTCTCAGCTGCTTAAGATGCTCCAGCAGGGAGAGATGAAAGATAAAGCGGAACTCCTTCTACAGGTAGAAGAGCTACTACACATAAAAGAAGAACTGTCATTACAGgtagCGTCACTACACGCTGCCCTGGAACAAGAAAGGTCAAAAGTCAAAGGTCTGCAGTCAGAACAACCAAAACATCAGAAGAGACAAAAAACAGCCAGTAAGTCAGGTGAAGTGAGAGAAGTTGCAGTGGAAACAAGAAAGGGCGGAAAGGCTCGGAGATGGATCTATGAAGGTCCCAAATGATAAAGACCTTAAAAGCAAAATTAAATAAACCAATGAACAAATTAAGAAAAACACAACTGATCATAATCAGGGTTCTCCttccttattttatttttctttagctTGGACTCTGTCAGCATATAATGCATGCCCCCTTaattacacagacacagatacacatacacacacacacacacacacacacacacacacacacaccccacacaaaacacacatataacacactcCAGAGGCAGCAGGATGTATTACACAGCTGAACAAGAATTACAGAAGCTTCTAAAAAAGGTTAAgtttaaactttgtgttgaaatGGTGGCTTGGCACAATGTGCTGCCCTCTGCAGGCACAAGCATTCATAGTAGGCCTACTGTTGAAGGCTCTGCGCCTGTTCTTTGTTTGGGTTTTAATGCCAAAATGACAGAACTTGacatgtatgtttttgtttcttttctttctcacagTTAAGTAAATAAAAACGTTTTCAGTTTC
>XM_039802951.1
TTTAAAGCGAAAGGGCGATCAGCGATCGATGTTATCCTTTTTGGCACCACCGGGCAGCTGTACTCAGGCAATTGCTGATAGCAAACCAACAGTAGCCGACAGCACCTTCACGAACAGTTAACGTTAGTTTTCCTTTTCGAAATGGCATCGTCTGCAATGATCACCGTCCCCACCACCGCCTCCCGCTTCGCCTTGCTCCAGATAGACTCGGATTCGGACTCCGACGCCTCCGATGCGGGAAAGACCACCACCAAAGCCGGACCGAAGCCCCGACAAGGGAAGGCAGGCGCAGCCGGGGGGAAAGCAGCTCAGTGCAACGACAAGaagaaagacaagaaaaagaagaagaaggaacagcagcagactgaggcaAATGAGTTACGTAATCTGGCCTTCAAGAAGATTCCTCAGAAGTCTTGTGCCCCGCCTCCCTCTATGACCCTGTCAGGAATAGCCGGTGAACTTCTCAGTCCTGCATCAGGGGACCACCCTATACCTTCAGAGGGGTGGCAGCAGTGGAAGCAGAGGGACGAGCAGATAACCTCTGAGCTTTATGAGGCTGACTTGGAAAAAGCCTTGATTCTAAGTAAACTGGAGTATGAACAAAACAAACCGCTCAACAACACAAACGCATCCTCACAGAAGGCACCTGGAGGAAAAGAGGGCGGAGGGAAGAAGGACAAAAAGAAGAATCAGCAGGCAAAAGATAAAAAGACagtttcactgcaggacttccAGGCTGAAGGCAGTGCAGAGCATTTGAGTAAGAAACAAGAGAAAGAGGACGGCAGAGTGGCTAATGTAGCGTTGAGAATTGGGCAGGAGGAGCGTTTTTTTAACAAGCTCGAGGATGACGTCACTCGGATTGTCCAACAGGAGAAGAGACGGGAGCAGTACACCAACAGTCATGGACAAGAAGTCGTCTCAATAGAGCACGAACGGGACCCCCGAGCAGAGCAGCTGAAATACGATCTGGAGAAGAAGGACGAGGAAATTGATAAGCTAAAGAAGAACATCTCACAGTGGGAGGGGAAATACAGAGATGTAAAAACAAGAAATTCTCAGCTGCTTAAGATGCTCCAGCAGGGAGAGATGAAAGATAAAGCGGAACTCCTTCTACAGGTAGAAGAGCTACTACACATAAAAGAAGAACTGTCATTACAGgtagCGTCACTACACGCTGCCCTGGAACAAGAAAGGTCAAAAGTCAAAGGTCTGCAGTCAGAACAACCAAAACATCAGGGAAACAAGAAAGGGCGGAAAGGCTCGGAGATGGATCTATGAAGGTCCCAAATGATAAAGACCTTAAAAGCAAAATTAAATAAACCAATGAACAAATTAAGAAAAACACAACTGATCATAATCAGGGTTCTCCttccttattttatttttctttagctTGGACTCTGTCAGCATATAATGCATGCCCCCTTaattacacagacacagatacacatacacacacacacacacacacacacacacacacacacaccccacacaaaacacacatataacacactcCAGAGGCAGCAGGATGTATTACACAGCTGAACAAGAATTACAGAAGCTTCTAAAAAAGGTTAAgtttaaactttgtgttgaaatGGTGGCTTGGCACAATGTGCTGCCCTCTGCAGGCACAAGCATTCATAGTAGGCCTACTGTTGAAGGCTCTGCGCCTGTTCTTTGTTTGGGTTTTAATGCCAAAATGACAGAACTTGacatgtatgtttttgtttcttttctttctcacagTTAAGTAAATAAAAACGTTTTCAGTTTC

Function

symbol description
gkap1 Predicted to be involved in signal transduction. Predicted to be located in Golgi apparatus. Orthologous to human GKAP1 (G kinase anchoring protein 1).

NR:

description
G kinase-anchoring protein 1 isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802950.1 True 1836 mRNA 0.46 13 21661703 21672091
XM_039802951.1 False 1786 mRNA 0.46 12 21661703 21672091

Neighbor

gene id symbol gene type direction distance location
LOC120561417 kif27 coding upstream 960 21650457 ~ 21660743 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding upstream 12127 21642897 ~ 21649576 (+)
hnrnpk hnrnpk coding upstream 20167 21627012 ~ 21641536 (+)
agtpbp1 agtpbp1 coding upstream 203356 21428343 ~ 21458347 (+)
golm1 golm1 coding upstream 250973 21403963 ~ 21410730 (+)
LOC120560432 NA coding downstream 116 21672207 ~ 21679064 (+)
frmd3 frmd3 coding downstream 20059 21692150 ~ 21751584 (+)
LOC120560723 NA coding downstream 79797 21751888 ~ 21762175 (+)
rasef rasef coding downstream 93535 21765626 ~ 21783917 (+)
LOC120560549 smad4,LOC104933118,LOC101068039,LOC101168872 coding downstream 208039 21880130 ~ 21892139 (+)
LOC120560273 NA non-coding upstream 40992 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding upstream 43101 21616223 ~ 21618602 (+)
G63628 NA non-coding upstream 174665 21486769 ~ 21487038 (+)
G63627 NA non-coding upstream 177037 21479780 ~ 21484666 (+)
G63576 NA non-coding upstream 314186 21346367 ~ 21347517 (+)
G63714 NA non-coding downstream 172741 21844832 ~ 21845138 (+)
G63715 NA non-coding downstream 203354 21875445 ~ 21875687 (+)
G63792 NA non-coding downstream 459793 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 1231944 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1315090 22987181 ~ 22988040 (+)
LOC120560787 NA other upstream 62414 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 983787 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1171117 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1219610 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1898179 19759596 ~ 19763524 (+)
G63905 NA other downstream 1257808 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1815876 23487967 ~ 23562285 (+)
G64108 NA other downstream 2020571 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3149223 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 3151627 24823718 ~ 24837448 (+)

Expression


Co-expression Network