spaw



Basic Information


Item Value
gene id spaw
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19544329 ~ 19547286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039802954.1
TTTCTGCATGTGTGAAATTTGACTTTTCTTCTGCCACTGTTACTAAACGGAAATGTGCTAATTGCTGTACAGCATTGCAAGTGTTATTAGTGGATGGATCTTTATGTTTCAAAAGGATTAGGCTCCTGAGTGAATATAAAAGCCCAGGCAGATTGACAGGACAATGACCTTGGCtaaatgttttctttgtctCCCCCTCTTGAGTGCTATGATGATCAGAGGGGCTGTTCAGATGCCTGGAGTGGTCAGGGGTCATCAAAGGGCAGCTGTCCACTATAAAGGGGCCTGTCTGGAGCTCCGTCTGCACATAGCATCATTTCAGCCTGAAGCCAgctggaggaaggaaggagatctttgcttctctctctcattaTTGTTGGAGCAGATTTTGTGGGTTTCAGTTCAAATGGAAGCCAGAGTTCTGACAGTTTTTTGCACATTCCTCCTCTGCTCTTTTGGAGTCGTTTTCTCCACCCAGAGGCACAGATATCTCACAGGCCTCAAGACCAGTTTAGCATTCAGAAATCTCTCATTTAATCATCGCAGCAGATACCCTCTGTACATGATGCAGCTGTACCGCTCCTTCAGGACTGCTGATTCCTCATCGCCGGTAGCTATTGACACCATTACAATGCAAGGTGACAACCCGTCAGCACACAGTTCTGACTCTGTCCTAAGTCTGATGGCCAGAGGTTGCCATCAAGTGGGTGAAAGATGGACAGTCACATTCGACATGTCATCCATCTCTACCAATGAGCTTGTCCAGCTGGCAGAACTTCGGATCAGACTACCTGCTTTCTCTGGCTCCAAGCGTGCCACCGTGGATTTATATCACTCTGGAAAGAGTTGTGACCATGGCAGCACATCATGCCAGGATGAGCACCTTTTCCTGGGGAGCTTAGACACATCAGCCAGCAGCACAAAGTCTGCCTGGAAGGTTTTTAACGTGACTGCCCTGTTAAAATACTGGCTGTACCAGGGAGATGGAGTGTCGAGCCAAGAGGCCTCAGGAGAACCTGAGGCGGACCATGGGAGCGGTGCTGGGGATGAAGGTGACATCACTGACAAGTCACTCTTCAAGAATTTGGGATTTAGGCAAAGAAAAATACACCATCCAACAACAAATCGGGTCATGATGGTTATCTTCTCTAAGCACAACCTGCCCCAGGAAGGCCAAACAGCACACAGTCTCATTTACACTGTGGAGAACTCCAAGTACGTGACGATGGACAGAGTCAGCAGTGACAGTCAAAGTCGACGCCACAAAAGGAACAGAATGGAGAGAATGAGGGTGGCTGCAGGAGCTTCACCTACTCCTGCACCAGCAGCAGAGCTGGCCCAGAGGCCGCTGTGTCGGAAGGTAGACATGTGGGTGGACTTTGACCACATCGGCTGGGACGAGTGGATTGTGCACCCTAAACGCTACAATGCATTTCGCTGTGAGGGAGAGTGTCCTACACCACTGGATGAGTCCTTCAACCCAACCAACCATGCGTACATGCAGAGCCTCTTGCAACATCACCATCCAGAAAGAGTATCTTGCCCATCCTGTGTGCCGACGCGTCTCAGCCCACTCTCCATGCTGTACTACGAGAATGATGATTTGGCCCTGCGGCATCACGAGGACATGATTGTTGAAGAGTGTGGATGTCACTGAAGGCCAGCACATCACTGGTTTCACTGCAGTCACAAAAGCAGCTATTGACGGAGCATAATCTTGAACTTTAATGCAACTGCCTTCTTAACCGTCTTCATGTAAACATTAATGCTCAATTATtaggggcgacctctagctcacccagtaagagcgtgcgccccatgtaggctgagtcctttgcagtggcccagggttcgagtccgacctgtggccctttgctgcgtgtcatcccccatctctctctcacaccttTCCTGtttatccactgtcactatcaaataaaagggaaaagccccaaaataatctttaaaaaaaagttcaattaTTAAATTTAAAGTTCCTAGTCATGACCTCTTACAATAGGATATGACTGTTAAGTTTGAATGACAATATATTTCATCCATACTGGGTGGTACACAATAGTATATATATCTTTAGTTAGGAGAAGGCTCCGTTATGCAAATGTGATATGTTGTGTCTATTTATACATtataatgtatattttgtaCATAAAATATGAAACATATATTAAAACCTTATTTTGACAtga

Function


NR:

description
PREDICTED: nodal homolog

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0040007 growth biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039802954.1 True 2207 mRNA 0.47 3 19544329 19547286
Loading

Neighbor


gene id symbol gene type direction distance location
dguok LOC104941578,LOC108234509,LOC102204634,LOC103375338 coding upstream 64 19540250 ~ 19544265 (+)
tcn2 NA coding upstream 4295 19536302 ~ 19540034 (+)
si:ch211-102c2.8 NA coding upstream 12006 19518176 ~ 19532323 (+)
osbp2b LOC104966002,LOC107394196,LOC103353525 coding upstream 39785 19454248 ~ 19504544 (+)
ap1b1 ap1b1,LOC102786025 coding upstream 116612 19399883 ~ 19427717 (+)
sftpbb sftpb coding downstream 201915 19749201 ~ 19753977 (+)
selenom selenom,LOC100701119,LOC101070319,LOC101478641 coding downstream 252836 19800122 ~ 19806542 (+)
mthfd2 mthfd2,LOC103363193 coding downstream 335924 19883210 ~ 19887470 (+)
arl6ip4 arl6ip4,LOC102787162 coding downstream 341964 19889250 ~ 19891659 (+)
mtrfr clg12h12orf65,LOC102787453,LOC102198566,LOC102302482,LOC104962307 coding downstream 394187 19941473 ~ 19942849 (+)
LOC120560789 NA non-coding upstream 390745 19151533 ~ 19153584 (+)
G62836 NA non-coding upstream 457467 19084934 ~ 19086862 (+)
G62796 NA non-coding upstream 561706 18966083 ~ 18982623 (+)
G62755 NA non-coding upstream 679522 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 771221 18772755 ~ 18773108 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 2124 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 8097 19555383 ~ 19562350 (+)
G63015 LOC107394186,LOC104941583 non-coding downstream 28275 19575561 ~ 19633642 (+)
G63016 NA non-coding downstream 34686 19581972 ~ 19584473 (+)
G63029 NA non-coding downstream 108946 19656232 ~ 19656496 (+)
rasl10a rasl10a other upstream 95379 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 462675 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 801930 18737518 ~ 18742399 (+)
acacb acacb other upstream 858866 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 1069598 18441347 ~ 18474731 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 212310 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 853661 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 926365 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 1129131 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 2041590 21588876 ~ 21599289 (+)

Expression


spaw Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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spaw Expression in each Bioproject

Bar chart with 8 bars.
spaw Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.

Co-expression Network