sftpbb (sftpb)


Basic Information

Item Value
gene id sftpbb
gene name sftpb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19749201 ~ 19753977 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803000.1
GTTTGCCAACTGTGGTTAAAACCTACAAAGAAGAAGAGCAGCACGGATGTTATTACAGACAAAAATCATCTGCGCCTCATATCGTTTTGTGCTTTTTCACATCATGTCAACATCTGGCTTTTTCCTGGTGGTCCTCGCGGTGTCTCTGTGGCCCGGAGACTCCAGGTTCATCAAACAGAAATCTCTGACATTGGATGTGTGTTCAGAGTGCAGTCAGGTCATCCAGCTGTCTGCCAACATGATTTCCAGCAGAGATACCAAGGAGACTGTATATGGAACCTTGCATGCTCTGTGCCAAAGCCTCCCAAGAGAGCAGGCATCAGAGTGTGAATCACAGGTGAAGATGTATTTGCTGAAAGTCCTGCAGCAGACACCAGGTCACCTGAAACCAGGAGAGACCTGTATGGTTTTTGGACTTTGTGTTGCCCGTAAGGAGGATGAACTGCTGAAACTTCCTCACCATGCCACCAATAAAGATGTATCCAGTTCTGCACTCAACACAGCCACCAGCACCCATGGGCAGTTCAACCCAGCTTGCACCCTGTGTTTGTTTATTATCAAGAAACTGGAAACCTTGTTGCCCAAGAATATGACTgagGATGCTTTGATGAAGATCATGGGAGAGGTCTGTGATCTCGTACCAGAGAGCTATAAGGAACGATGTGATGATTTTGTCGACAAATATGGCACGCAGATAGTCGAATTCCTCTTATCGTCAGCTGCACCTCACACAATATGTACTCTTTTGCACCTCTGTTTGTTCAAGGAGCAGCCTGTTGCAGAGTGGTTCCTCCCCTCGGATTGTGAGTCATGCCGCACGCTGGCTGTGCTGAGCCGACTTCACCTGGGTCTCAACTCTACCGAACCTCTGACTTCCTCTTTCctccagtctgtgtgtgtccaccaCCCCAATGCCATCCCCAAGTGTGATGCTTTCACTAAAATCTATGGCTCCCGACTGCAAAAGGTTTTGGGAAACCAGATGGACGTTCTGCATGCTTGTGAGAGAGCTGATCTGTGCGTGGCCTCCAAGAAGTTGGAGCCACTGGGAAAGAATCGCTGTACTTGGGGGCCAAGCTACTGGTGCAAAGACATTCAAACTGCTCAGAAATGTGGTAACCAGGCCTTCTGTGAGAAGTACATGTGGAAGGAGTGAACCAAACTGCCGCCCTGTGTGCACACAAAGAACTACTTCCTTTTCACAAATGTATTGCACTGATGaatttttataaatgtattgcacttaaactgtttttttttttcttactttttggGGAATTATCCATCTCATATGAATGAGCCATACATATTCATCAAGAAATGTTCTGCTTTGCATGAAGTGTCACAACACTGAGGCTGTGATTCAGTCTGAAACATCAGTTTCTGCAGTGATTAACAGTTTTGTGAAGCGTTATTCTGTAGATTGCTACATGTATGTTATGAATGTAGAAAAAGTTAATTATATAGAATAAGCTCTTGGTATGTATTCAAGACCATTTGGATGACGACTACTCAAAAAAAGCTGCTTCATCTGTTATCTTGTTGCAGTTCTATGATCCCTGGTGCAAAtaaccacatacacacaacaaagtCCTAAAACTAAATTACAATCAAATGGTTTGTCATTAAAATTCAACATACAGA

Function

symbol description
sftpb Predicted to be involved in animal organ morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in alveolar lamellar body; extracellular space; and multivesicular body. Implicated in lung disease (multiple); respiratory syncytial virus infectious disease; and toxic shock syndrome. Biomarker of asthma; cystic fibrosis; lung disease (multiple); and respiratory syncytial virus infectious disease.

NR:

description
prosaposin-like

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005764 lysosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803000.1 True 1644 mRNA 0.44 11 19749201 19753977

Neighbor

gene id symbol gene type direction distance location
spaw NA coding upstream 201915 19544329 ~ 19547286 (+)
dguok LOC104941578,LOC108234509,LOC102204634,LOC103375338 coding upstream 204936 19540250 ~ 19544265 (+)
tcn2 NA coding upstream 209167 19536302 ~ 19540034 (+)
si:ch211-102c2.8 NA coding upstream 216878 19518176 ~ 19532323 (+)
osbp2b LOC104966002,LOC107394196,LOC103353525 coding upstream 244657 19454248 ~ 19504544 (+)
selenom selenom,LOC100701119,LOC101070319,LOC101478641 coding downstream 46145 19800122 ~ 19806542 (+)
mthfd2 mthfd2,LOC103363193 coding downstream 129233 19883210 ~ 19887470 (+)
arl6ip4 arl6ip4,LOC102787162 coding downstream 135273 19889250 ~ 19891659 (+)
mtrfr clg12h12orf65,LOC102787453,LOC102198566,LOC102302482,LOC104962307 coding downstream 187496 19941473 ~ 19942849 (+)
kmt5ab LOC102787754 coding downstream 189851 19943828 ~ 19948469 (+)
G63076 LOC103376870 non-coding upstream 1732 19746949 ~ 19747469 (+)
G63068 LOC103148513,LOC106959092,LOC106925485,LOC102232144 non-coding upstream 31726 19716498 ~ 19717475 (+)
G63029 NA non-coding upstream 92705 19656232 ~ 19656496 (+)
G63015 LOC107394186,LOC104941583 non-coding upstream 115559 19575561 ~ 19633642 (+)
G63016 NA non-coding upstream 164728 19581972 ~ 19584473 (+)
G63087 NA non-coding downstream 26988 19780965 ~ 19832327 (+)
G63128 NA non-coding downstream 119124 19873101 ~ 19875144 (+)
G63189 NA non-coding downstream 261027 20015004 ~ 20015249 (+)
G63190 NA non-coding downstream 262255 20016232 ~ 20016661 (+)
G63192 NA non-coding downstream 264140 20018117 ~ 20018412 (+)
rasl10a rasl10a other upstream 300251 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 667547 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1006802 18737518 ~ 18742399 (+)
acacb acacb other upstream 1063738 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 1274470 18441347 ~ 18474731 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 5619 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 646970 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 719674 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 922440 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1834899 21588876 ~ 21599289 (+)

Expression


Co-expression Network