selenom (selenom,LOC100701119,LOC101070319,LOC101478641)


Basic Information

Item Value
gene id selenom
gene name selenom,LOC100701119,LOC101070319,LOC101478641
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19800122 ~ 19806542 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803014.1
gggAGAAATATTTGACGTGGCAAGAGGTCCGGACGTGACATATCCGCACATCAGCTCTCCGCCTCCTCTCTTCAGCTGAGTTACGTTACTTACCTACAGACATCTGCAGGTAGCCTAGTACTGGTCCTGGAGCAGAGCGAGTCCTGGTCCACGATCTGAACCAGTAGAAATAATGTGGCTGATTGCGTTGGCCAGTTTACTTCACTGCGTCTCGGCCTACGATGTGGATCTGAAGAAACTGGACGGGCTGGCGAAAGCGAGGGTGGAGACTTGTGGTGGATGACAGCTGAACAGGCTCAGAGAGGTCAAAGCCTTTGTGGTCCAGGACATTCCTCTTTACCATAACCTGGTGATGAAGCACATTCCTGGGGCCGACCCTGAGCTTGTCCTCCTGAACCACTATTTTGAAGAGCTGGATCGGATCGCCCTATCTGACATGACCCGCTCTGAGATCAACGAGCTGCTGGGGGAGCTGGGCTTCTACAAGAAGGCTAAACCTGAGGACGAGGTGCCGGAGGAGTTCCACTTTTCTCCTGCCAAAGACAGCCCGTTTAAAGATGAGCCGGCCTATAAACCCTCCACTTCCCATCTTGCCACAGAGAATGCCTCCTCAGAGCCCAAAGCAGAAACCAAGCATACTGACCTATAACCCACCAGAGTGGAGAAAAGTAGGGATCTCACAGTACCACTAAGCCCAAAAGCTGCTCCACGACCAGCTGATTATTGCAGTCGATGACTAACAAAATAAGACCAGCAGGTCATGGATCAGCCCTTGGGCAAGGACACAATCTTAACATCAGCAAAAGGCCTTTAAAAAGTCCACAGTCTGAATTTGCACATATTGTTCTTGCGGTTTGTTCTTATTTTTGCAGCAATAATAACCCAACCGGCTGCTTTGTGAGTGCTTTTCTACTCTCTACACGACTGGAAGTGTGTACATTTTATTGTTCCATCATGTGTCAGCTGTCTTCAGGATTTTCGCCTCTCTTGAGTTCTCTTGCGTGTCTGATTGCTTCCTACCTACTGTGAAACCGAATGAAGCCCCAGGCAGAAAACTGTCTGACTGGCCTGAGGCTGATGCTACATGTTCTGGTGGGTttgacaaatacacacaagagGATTTAAGTTGAAGCAttgtaaaagaataaaatgaaatatttgaaaGAAATAACCTCA

Function

symbol description
selenom Predicted to enable oxidoreductase activity. Predicted to be active in endoplasmic reticulum lumen. Is expressed in several structures, including cranial ganglion; hatching gland; notochord; otic placode; and polster. Orthologous to human SELENOM (selenoprotein M).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: selenoprotein M

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803014.1 True 1176 mRNA 0.48 5 19800122 19806542

Neighbor

gene id symbol gene type direction distance location
sftpbb sftpb coding upstream 46145 19749201 ~ 19753977 (+)
spaw NA coding upstream 252836 19544329 ~ 19547286 (+)
dguok LOC104941578,LOC108234509,LOC102204634,LOC103375338 coding upstream 255857 19540250 ~ 19544265 (+)
tcn2 NA coding upstream 260088 19536302 ~ 19540034 (+)
si:ch211-102c2.8 NA coding upstream 267799 19518176 ~ 19532323 (+)
mthfd2 mthfd2,LOC103363193 coding downstream 76668 19883210 ~ 19887470 (+)
arl6ip4 arl6ip4,LOC102787162 coding downstream 82708 19889250 ~ 19891659 (+)
mtrfr clg12h12orf65,LOC102787453,LOC102198566,LOC102302482,LOC104962307 coding downstream 134931 19941473 ~ 19942849 (+)
kmt5ab LOC102787754 coding downstream 137286 19943828 ~ 19948469 (+)
LOC120560983 NA coding downstream 177293 19983835 ~ 19984968 (+)
G63076 LOC103376870 non-coding upstream 52653 19746949 ~ 19747469 (+)
G63068 LOC103148513,LOC106959092,LOC106925485,LOC102232144 non-coding upstream 82647 19716498 ~ 19717475 (+)
G63029 NA non-coding upstream 143626 19656232 ~ 19656496 (+)
G63015 LOC107394186,LOC104941583 non-coding upstream 166480 19575561 ~ 19633642 (+)
G63128 NA non-coding downstream 66559 19873101 ~ 19875144 (+)
G63189 NA non-coding downstream 208462 20015004 ~ 20015249 (+)
G63190 NA non-coding downstream 209690 20016232 ~ 20016661 (+)
G63192 NA non-coding downstream 211575 20018117 ~ 20018412 (+)
G63202 NA non-coding downstream 218371 20024913 ~ 20025748 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 36598 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 351172 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 718468 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1057723 18737518 ~ 18742399 (+)
acacb acacb other upstream 1114659 18661157 ~ 18685463 (+)
vps13a vps13a other downstream 594405 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 667109 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 869875 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1782334 21588876 ~ 21599289 (+)
G63905 NA other downstream 3123357 22929899 ~ 22930205 (+)

Expression


Co-expression Network