cnot6l (cnot6l)


Basic Information

Item Value
gene id cnot6l
gene name cnot6l
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34170475 ~ 34187620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803019.1
AGCGGAAGCCCCGTTTGTTGTTCTTCCTTCTGTTTCCGAGACGTTCAGGGTCTAAACGGGTTCAACAGCCGTGTCTGCATGTCTCTACCAATTCCCTCTATAAATCGTCTTCTACTGCTCCCGAATGAAGattaACAGGTATGCCAAAGGAAAAATATGATCCTCCTGATCCCCGCAGATGTTACACCATCATGCCAGCGGAGGAGGCGGCCAATGGGAAGAAGTCTTACTGGGCCGAGCTCGAGATTTCTGGACGAGTGAGGAGCCTGAGCAGCTCGTTATGGACGCTCACCCACCTGACGGCGCTGCACATCAACGACAACAACCTGAGCCGCATCCCGCCAGACATCGCCAAGCTGCCCAACCTGGTCTTCCTCAACCTGTCGTCCAATAAGCTCCGCAGCCTGCCCGCCGAACTGGGCAACATGGTCTCTCTCAGGGAATTGCTTTTAAACAACAATCTTTTACGAGTTCTGCCTTATGAACTCGGGAGGCTTTTCCAGTTACAAACCTTGGGGCTAAAAGGAAACCCTTTGTCCCAAGACATCCTCAATCTGTACCAGGAGTCGGATGGAACCAGGAAGCTTTTGAACTACATGCTCGACAATCTAGCAGTGCACCCAGAGCAGCTCCCTCAAAGACCTTGGATCACTCTGAAAGAGCGAGACCAAATGACTCCCACAGCCGTGTTCACGGTTATGTGCTACAACGTGCTGTGCGACAAGTACGCCACGCGACAGCTGTACGGCTACTGTCCATCCTGGGCCCTTAACTGGGAGTACCGCAAGAAAGGCATCATGGAGGAAATCACCAGCTGTGACGCTGACATCATCAGCCTGCAGGAGGTGGAGACAGAGCAGTACTACACTATGTTTCTGGAAACGCTGAAGGAGCGCGGCTACGACGGCTACTTCTGCCCAAAGTCTCGTGCCAAACTTGTTTCTGAACAGGAGAGGAAACACGTGGACGGCTGCGCTGTGTTCTTCAAAACCGAAAAGTTTACTTTGGTCCAGAAACACACTGTGGAGTTCAACCAGGTGGCCATGGCCAACTCTGAGGGCTCAGAGGTCATGCTGAACAGAGTGATGACCAAAGACAACATCGGGGTGGTCGTTCTGCTTGAGGTCAACAAGGACATGTTCTCCGATGgcATGAAGCCCCAACAGGAGAGGCAGCTGATCCTGGTGGCCAACGCCCACATGCATTGGGACCCCGAGTACTCGGACGTCAAGTTGATCCAAACTATGATGTTCCTGTCTGAGCTGAAGAGCATCGCTGAGAGGGCCTCAGGCTCCATGGCGACCGGTTCGCCGACCTCCAACCCGTCCTCCATCCCCATCGTACTTTGTGCTGACCTCAACTCGCTGCCCGACTCCGGTGTGGTGGAATACCTGAGCAACGGAGGAGTGGCCGAGAACCACAAGGACTTCAAGGAGCTACGCTACAATGAATGTCTGACCAACTTCAGCTGCAACGGCAAGAACGGCAACTCCGATGGAAGCATCACACACAGCTTCCAGCTGAAGAGCGCCTACGACAGCAATCTGATGCCTTACACCAACTACACATATGACTTTAAGGGCGTTATCGACTACATCTTCTTCTCCAAGACCCACATGAGTGTCCTGGGCCTGATGGGACCGCTGGACAGCCAGTGGCtcatcaacaacaacatcacTGGCTGCCCCCACCCCCACATCCCCTCGGACCACTTCTCCCTGCTCGCCCAGCTGGAGCTTCACCCTCCCCTGCCCCACCCGCTCAAACCCCTCAACGGACTGCACCTCCCCGTCCACAGGTAGTGCAGCCGGAGAAAGCCCCCCCAACCTTCCTGCCTCACCTTTAAAAAACACTGTCA

Function

symbol description
cnot6l Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA; mRNA processing; and regulation of translation. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803019.1 True 1858 mRNA 0.54 12 34170475 34187620

Neighbor

gene id symbol gene type direction distance location
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding upstream 379665 33779007 ~ 33790810 (+)
prkg2 prkg2 coding upstream 826460 33303339 ~ 33344015 (+)
rasgef1ba rasgef1b coding upstream 876374 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding upstream 918068 33248404 ~ 33252407 (+)
wdfy3 NA coding upstream 1099965 32957229 ~ 33070510 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 85327 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 93359 34280979 ~ 34289653 (+)
LOC120560630 set,LOC102777863,LOC107083999,LOC100696975,LOC105014167 coding downstream 122480 34310100 ~ 34314260 (+)
LOC120560629 LOC100693693 coding downstream 128686 34316306 ~ 34330925 (+)
gle1 gle1 coding downstream 144222 34331842 ~ 34344199 (+)
LOC120560041 NA non-coding upstream 293468 33876175 ~ 33877007 (+)
LOC120561187 NA non-coding upstream 397941 33769844 ~ 33772534 (+)
G66571 NA non-coding upstream 414520 33755569 ~ 33755955 (+)
G66568 NA non-coding upstream 444693 33725520 ~ 33725782 (+)
G66522 bmp3 non-coding upstream 817525 33351699 ~ 33352950 (+)
G66652 NA non-coding downstream 210 34187830 ~ 34281929 (+)
G66689 NA non-coding downstream 243322 34430942 ~ 34439928 (+)
G66692 LOC104949787,LOC104934882 non-coding downstream 268870 34456490 ~ 34456749 (+)
G66695 NA non-coding downstream 298918 34486538 ~ 34486751 (+)
G66769 NA non-coding downstream 320522 34508142 ~ 34509613 (+)
G66578 NA other upstream 394077 33775925 ~ 33776398 (+)
antxr2a antxr2 other upstream 566850 33517599 ~ 33603625 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 1057659 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 1557537 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 1659738 32477038 ~ 32510737 (+)
cfap157 NA other downstream 326390 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 578310 34765930 ~ 34773806 (+)
G66832 NA other downstream 673879 34861499 ~ 34864690 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other downstream 859224 35046844 ~ 35059631 (+)
LOC120560625 cep120 other downstream 1335045 35522665 ~ 35549231 (+)

Expression


Co-expression Network