srrm4 (srrm4)


Basic Information

Item Value
gene id srrm4
gene name srrm4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30769425 ~ 30835681 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803028.1
GAGCTCCTCACTTGATTTCCACTTGCACACTCTCCAACGCAAAATCACGCCTGTCCTCAGACGCGTCGCGACACTTGCCTTCACACCCGCTCAGCCCTGAGCCGGTGTGCGTAGGCGTGCAATCATCTCTACACCAAAACATTGCACTCCAGCAACAAGAAAACCACTTGGTGGCTCACTCCTCTGGACCTGAAACAGGCTCCGTCCTCTTGTGAGTGATGCCTAACTCCGTGTGAGGCTTCCCGACGGGAGCAAACGGAAGAAAAAGGAGCGCTCCGACTCCCAACCCCGAACTCAGACCCACGTCCTAAAAAAGCAGCAGATGTGACAAAAGAGGAGAGGCGGAGAAAGAGAAACACAATCTCCCCCTCCCACCCCACCCCTCCTTCCCTCATCTGAAGAACAATACCCAGCCTCCAGTTGGAGAGGGTCAGCTTTTGTCCCTCTCCCCACGATCCCGTTGGAGAGAGCGAGCAGACACGCTGACACATTGACCTGCTGCTGTGAGAGGAGAACACGGTGCGGAACAGTTGCTACGCTCGGCACAGTTTTAATTCAGTACTTGGACAGCTCCTGAGAGACGACCGGCGCAAGTGTGCGTTTCCATGAGCGAGTAGACTCTACTGTTTTGGTTCGGAGACCAAGAACCACAGATGCAGCCCCCGTGTGCGCTCCAGCTCGGCCCCCGCGGCCCCTCTCCATCCCTGGGATCGCAGAGCGGCACCGTCGGCTTCCATCAGCTGGAAGAGAAGCAGCTCTTTGAGAAGTTTTGGAAGGGGACTTTCAAGGCCGTGGCCACCCCGAGACCGGAGAGCGTCATCGTGGCCAGCATCACCGCCCACAGGAGGGTGACCAACTTAGAGACAACCGCCTGCCAGCCGCTCAAGACTGATGAGAGGAAATCGGCGGACACCAGGGTGGACACGGCGGACAGACATGGCTGCATCAAAGGAAAAAGACGCAAACACCACAGTCATCGCAGGGCCAGGAGCCCCTCCTTTGATGAGGAACTATCCCCCCGGCCCaaggggaagaagaagaagaagagaaagtcTGAACggaagaggaaaaggaaaagGTCTCCTTCCTACAGCCTGTCGCCactgaggaagaagaaaaagaagaagaagaagagctccAAGAAAAGCAAGCGGCATAGGTATACctccaaaaagtcaaaacacagCTCTTCAAGTTTAAAACATAAGAGGAAGGATGAGCGCAAGCACAAGAAAAGTTCACGGACTCACTCGCGGCGGAGGCGACGCTATCGGAGGTCAGAGTCGGACAGTTCTTCTTACCAATCTTCCACAGACGACAGACACCATCTGCAGAAATCTGTGGTACATCAGGCATTAGGAGACCTGGCAGTTGTAGTAGAGGAAACCAATGGAGTGCTTGACCACACGGACATGAAGTGGAGATCTGCAACCAAATCAGTGTGTAAAACGGCTCCAAAATATCGCTCCATCCTCTCCACTGCCACCATTTTGTCGTCAAAACCTGGAAGCGAGCTTTTACACGGAAAAGGGTCTCAGCATTTATCGAGCCAGACCGAAGGTCCGCACGATTACGATTCTGGGAATGACACATCTTCGCCGCCGTCAAGCAAAACTGGCGTTTCTCAGGCAAATGTCACTGACAACAAGAAGACCCACTGTAAACGCCTGGCCTCGCCAGAGAAGCTGAAGTTCAAAGACAATGCCTCTGATTCAGGAAACTCTGTGACCAGCTACGCTTCCCTGTGCAAACCTTACATGGAGGACGGCTTGTCTGCAACCCTTTTCAGTGGAAACGGCAAGAGAGAGCAGATAACCTTAGGGTGTCGGGTAGAGGTTGTGAGATCTCCGAAGCCTTCCAGCTGTTCACAGAGGATGAGCGAGTCGTCTCGAAGGCGTCTGAAAACCCGGTCATCcagcagcaggagcaggagCCGATCATCGGGGAGCTCCAGATACTCTGGGCGCTACTCTCGTAGCCTGTCGCTGTCATCTTGCACCTCGTACTCACGTTCACCGAGTTATTCAGCTGACCTGAGGCGACGAGGCAGCGTGGCCAGCCTGAGTTCCAGAGGAAGCTACTCCAGACACAGTGCTGACAGACTacgagacagaaagagaacgcATAGCTCCcgagagaaagatgtgaagcaTGCACATAAGGTTAGTGGGAAGAGACAAAGACGCAAATCCTACTCTCCTatgaagaaaaggaggagagactCGCCAAGCCATCTGGAAGCACGCCGAATCACAAGTGCCAGGAAGCGACCCATCCCTTACTTCCGACCCAGCCCTTCAAGCAGCAGTCGGTCCACCAGTGTGTCGTCCTGGAGCAGCCTCTTCACCCGCAGCCGCAGTCGCAGCCCCATCCACAGTATTAGCCGGAGCCGGAGCCATAGTTACTCCTCCTACAGGAGCTTCAGCCGCAGTTCATCCTGGAACTCAATCTTTGGGACCCGCAGTCGCAGCCGGAGCCGCGGTTCGTTGAACAAACGCAACAAAACAAGGCATTAGGTTTCTTAGAGCACATTAAGGGACGAGAGCGGGTGCGGTGGATGTTGGAGCAatcgtctgtgtctctgtgctccACTTTGACACTTGAGTGGAAATGTCCCCGCAAGGGCTCCGACCACGTCTTTCATTGAGGCAGTCTTGTTCGCTGTCTGCTTACAGAGACCACTGGAGACCGaatgtctttttgtttgttttgttcttgtACTGCATTCTCTTGCATCAGCACTCACAATGGCCTGAGACTATTTATCTCTTAGATATTTACTATAGAAAATGCACATGGGACATAAACAGTGTTCCTGTATTTGGTCAACAAACATCGCTGTTCCTTATTTTATGTCCATGCACTTCCCATTGAATTACTATCCTAAATAAATGctcaatatttatttaaaaattgatTGTTCTTTAAAATGGTGCATAATGAGGCCTGAAGATACTAAGAAGAAAGTACTTAATTCCCATAAGTaattaagggggggggggg

Function

symbol description
srrm4 Predicted to enable mRNA binding activity. Involved in several processes, including mRNA splicing, via spliceosome; nervous system development; and regulation of RNA splicing. Acts upstream of or within axonogenesis; facial nucleus development; and neuron maturation. Part of U2-type spliceosomal complex. Is expressed in nervous system; neural plate; and neural tube. Orthologous to human SRRM4 (serine/arginine repetitive matrix 4).

NR:

description
PREDICTED: serine/arginine repetitive matrix protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803028.1 True 3003 mRNA 0.52 13 30769425 30835681

Neighbor

gene id symbol gene type direction distance location
suds3 suds3 coding upstream 111695 30648373 ~ 30657730 (+)
pebp1 pebp1 coding upstream 211611 30555013 ~ 30557814 (+)
rfc5 rfc5 coding upstream 239042 30524069 ~ 30530383 (+)
spring1 clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336 coding upstream 502352 30263603 ~ 30267073 (+)
tesca tesc coding upstream 546900 30197629 ~ 30222525 (+)
hspb8 hspb8 coding downstream 2545 30838226 ~ 30849481 (+)
znrf3 znrf3 coding downstream 93065 30928746 ~ 31007297 (+)
si:dkey-174n20.1 LOC104959464,LOC104920648,LOC101478912,LOC102310039,LOC100693286 coding downstream 282144 31117825 ~ 31121911 (+)
LOC120561479 NA coding downstream 286877 31122558 ~ 31124674 (+)
LOC120561480 NA coding downstream 291179 31126860 ~ 31128760 (+)
G65890 vsig10 non-coding upstream 228586 30539817 ~ 30540839 (+)
G65883 ksr2 non-coding upstream 337684 30431386 ~ 30431741 (+)
G65881 NA non-coding upstream 347979 30417513 ~ 30421446 (+)
LOC120559990 NA non-coding upstream 381606 30387164 ~ 30387819 (+)
G65792 NA non-coding upstream 546349 30206616 ~ 30223076 (+)
G65958 xbp1 non-coding downstream 70675 30906356 ~ 30909470 (+)
G66015 NA non-coding downstream 294360 31130041 ~ 31154168 (+)
G66072 NA non-coding downstream 465829 31301510 ~ 31301746 (+)
G66071 NA non-coding downstream 475262 31310943 ~ 31311447 (+)
G66069 NA non-coding downstream 481895 31317576 ~ 31318474 (+)
G65899 taok3 other upstream 191266 30574086 ~ 30578159 (+)
LOC120560820 NA other upstream 517906 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 557317 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 1417669 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1919954 28845626 ~ 28849471 (+)
LOC120561064 NA other downstream 21899 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 972114 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1196895 32032576 ~ 32209534 (+)
G66231 NA other downstream 1290612 32126293 ~ 32136966 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other downstream 1486826 32322507 ~ 32329990 (+)

Expression


Co-expression Network