bicdl1 (bicdl1)


Basic Information

Item Value
gene id bicdl1
gene name bicdl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8172560 ~ 8204186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803057.1
ATGTCCACTTTCTGCCTAGACCTGCAGGCGTCCGCCGTGGTTTCAGCACCACAGGAGCTGGACAGCGACTGCATGGAGCCCCGGGACAGCCCCGCCGCTTATGAGCCCGGCGGCTTTCAGGGTCACCCGCTGCCGCACGCCGGGTCCGGAGGCCTCGGCATGGCCTTGGAGGAGGAACTGGCCATGCTTACCGGGGACCGGGACGACGAGGAGGAACTGTCGGACTTAGAGACGCCTGCGGTGGGGCAGAACGCAGACTTGCTGTCGCTCTTCCGTCAAAAGGAAAAAGACTTGGTTTTAGCTGCTAAACTCGGCAAAGCGCTGCTGGAGAGAAACCAAGACTTGACCAAGCAATATGAGAAAATGCACAAAGATCTCAACGAGAAATTAGAGCACTTGGAGCAGGAGAAGCATGAGTTGCGTAGGCGTCTGGAAAGTCGAGAGGGGGAGTGGGAGGGCCGTGTTGCCGAGCTGGAGACGGACGTCCAGCAGCTGCAGGGTGAGCTGGAGCGGCATCAGGTCCAGCTGAGAGAGGCTGACAGAGACAAGACCAAGTCCATCAGCGAGCTCTCCGAACAGAACCATAGACTGCTGGAGCAACTCAGTAGGGCTGCAGAGGTGGAAAGGCAGTTGTCCACTCAGGTCCATTCATTACGGGATGACTTCAGGGAGAAGAGTATGTCTACAAGCCAGCACATGACTCGACTAGAGACTCTACAGGCTGAGCAAGGGCTAGAAATTAAGATGCTGTCGGAGAGGAAGATGGAGCTGGAGCGCCGCGTGAACGCCATGCTGGAGGAGAATGAGCTGCTGCAGAATACAGTGGAGGACCTCCGAGAGAGGACGCTGGTGTTGGAGAGGCAGTCTCACACGAAGGACCTACAGTTACGGCAGAGCCAGCTGGAGCTTCAGGAGGTTCAGATGTCCCACAGGCAGCTGGCTGCTCGGCTGGAGGAGCTGACGGAGGAGCACAGCCTCCATGGCCTCACCCCGCACCCGTCCAGCCTGCTGTGTGAGATAGAACAGAGCATGgagcaggaggagcaggagcaggagagagagcagCTGCGTCTTCAGCTATGGGAGGCCTACTGTGAAGTTCGCTCGCTCTGCTCCCATCTCCGGGGAAACGACGTCACGGATTCGGCGCTGTCCACTGACTCTTCCATGGACGAGTCCTCGGAGACGTCCTCAGCCAAGGATGTGCCTACTGGGAGCCTCCACACCAGCCTGCTAGAGCTACGGAGGCTCACACAGAATCTGCTGGATGGCAACGAGTCCACGGGCTCGCCGCGCAGTGATGAGGAGGCTCTGGAGGAGCAGACGAGGAAGCTAGGAGAGGAGCTGAGGGAAGTCAGAGAGCTGTACGAAGCTGAGCAGGACAAAACACGCAGCAATGAAGACAAGGTGCTGCAGCTGCACAATCAGATGGCGCTGCTCTCTGTAGAGATGTGCTCTCTCCGGGAGGACAACGAGCGGATGAGGACGATGGCTGAAGTCCGAGAACCCAGCGAGCAGCTCCAGACTGCTATCAGAGACAGAGACGACGCCATAACCAAGAAGAAAGCAGTGGAGATGGAGCTGGCCAAGTGTAAAATAGACATCATGTCTCTGAATAGCCAGCTCCTGGACGCCATCCAGCAGAAGCTCAACCTGTCGCAGCAGCTGGAGGCTTGGCAGGATGATATGCACAGAGTGATTGACCAGCAGTTGATGGACAAGTACCAGGATGAGTGGCGCTCGGACCCTACCTCCCTGCCAGGGTCGTCCAGGGCCCATGGCGGTCAGTCCTCCAGAAGAGCTCACCGCATCTCCGACCGGGACAAGagacttttctcttttttcaaaaaGAACTGAGCCTCATTGGagcacagcagacagacagagacagacgagGCCAGGGACAAGGAGGGAGTGACATCACAGTATCGGGGTAACAACACAGCCAAAGACGGGCAGTGGCACACACTGAGGTTTGGa
>XM_039803058.1
AGCGGTTGAGGAGGCATCGGGATCGCGCTCATCTGTTTGCCTGGCAAATGCCTCCGGTGTAACAGGCCGATCATTATGGGAGAACCAGGATCCCGAAGCGGGATGGACCCTGACCCACCGACCGCTGCGCAGAGCTTATCGAGACGGTTTATACCGGGATAAAACATTGTGTGTGTCCAATAGCAAACAGCCCGTCAGTGAGCTACAGAGGAGGTGGTGTTTGCTGGGATTCAATCTGAGCCAGAGTCGCGGCTGGTAGCTTAACTAGGAGAGAGGGACGAGGAAGCTGGGAAGACAGCAGTTTACAATCTAACCGGATCCTGCGCGAAATTGCGAGAATAATGGATGGACTGTCGATTACAAGCTGGTCCGGTCAGCACAACCCTGTCAGAGCAGGGTGGGTTCATCCGGAGTGAAATCAGTCGGCTCTTATTTGTCGGCTTGTCCTCCGCCGGGAGGCGATGTCCACTTTCTGCCTAGACCTGCAGGCGTCCGCCGTGGTTTCAGCACCACAGGAGCTGGACAGCGACTGCATGGAGCCCCGGGACAGCCCCGCCGCTTATGAGCCCGGCGGCTTTCAGGGTCACCCGCTGCCGCACGCCGGGTCCGGAGGCCTCGGCATGGCCTTGGAGGAGGAACTGGCCATGCTTACCGGGGACCGGGACGACGAGGAGGAACTGTCGGACTTAGAGACGCCTGCGGTGGGGCAGAACGCAGACTTGCTGTCGCTCTTCCGTCAAAAGGAAAAAGACTTGGTTTTAGCTGCTAAACTCGGCAAAGCGCTGCTGGAGAGAAACCAAGACTTGACCAAGCAATATGAGAAAATGCACAAAGATCTCAACGAGAAATTAGAGCACTTGGAGCAGGAGAAGCATGAGTTGCGTAGGCGTCTGGAAAGTCGAGAGGGGGAGTGGGAGGGCCGTGTTGCCGAGCTGGAGACGGACGTCCAGCAGCTGCAGGGTGAGCTGGAGCGGCATCAGGTCCAGCTGAGAGAGGCTGACAGAGACAAGACCAAGTCCATCAGCGAGCTCTCCGAACAGAACCATAGACTGCTGGAGCAACTCAGTAGGGCTGCAGAGGTGGAAAGGCAGTTGTCCACTCAGGTCCATTCATTACGGGATGACTTCAGGGAGAAGAGTATGTCTACAAGCCAGCACATGACTCGACTAGAGACTCTACAGGCTGAGATTAAGATGCTGTCGGAGAGGAAGATGGAGCTGGAGCGCCGCGTGAACGCCATGCTGGAGGAGAATGAGCTGCTGCAGAATACAGTGGAGGACCTCCGAGAGAGGACGCTGGTGTTGGAGAGGCAGTCTCACACGAAGGACCTACAGTTACGGCAGAGCCAGCTGGAGCTTCAGGAGGTTCAGATGTCCCACAGGCAGCTGGCTGCTCGGCTGGAGGAGCTGACGGAGGAGCACAGCCTCCATGGCCTCACCCCGCACCCGTCCAGCCTGCTGTGTGAGATAGAACAGAGCATGgagcaggaggagcaggagcaggagagagagcagCTGCGTCTTCAGCTATGGGAGGCCTACTGTGAAGTTCGCTCGCTCTGCTCCCATCTCCGGGGAAACGACGTCACGGATTCGGCGCTGTCCACTGACTCTTCCATGGACGAGTCCTCGGAGACGTCCTCAGCCAAGGATGTGCCTACTGGGAGCCTCCACACCAGCCTGCTAGAGCTACGGAGGCTCACACAGAATCTGCTGGATGGCAACGAGTCCACGGGCTCGCCGCGCAGTGATGAGGAGGCTCTGGAGGAGCAGACGAGGAAGCTAGGAGAGGAGCTGAGGGAAGTCAGAGAGCTGTACGAAGCTGAGCAGGACAAAACACGCAGCAATGAAGACAAGGTGCTGCAGCTGCACAATCAGATGGCGCTGCTCTCTGTAGAGATGTGCTCTCTCCGGGAGGACAACGAGCGGATGAGGACGATGGCTGAAGTCCGAGAACCCAGCGAGCAGCTCCAGACTGCTATCAGAGACAGAGACGACGCCATAACCAAGAAGAAAGCAGTGGAGATGGAGCTGGCCAAGTGTAAAATAGACATCATGTCTCTGAATAGCCAGCTCCTGGACGCCATCCAGCAGAAGCTCAACCTGTCGCAGCAGCTGGAGGCTTGGCAGGATGATATGCACAGAGTGATTGACCAGCAGTTGATGGACAAGTACCAGGATGAGTGGCGCTCGGACCCTACCTCCCTGCCAGGGTCGTCCAGGGCCCATGGCGGTCAGTCCTCCAGAAGAGCTCACCGCATCTCCGACCGGGACAAGagacttttctcttttttcaaaaaGAACTGA

Function

symbol description
bicdl1 Predicted to enable dynactin binding activity and small GTPase binding activity. Involved in eye development. Acts upstream of or within several processes, including embryonic camera-type eye development; negative regulation of neuron projection development; and vesicle transport along microtubule. Predicted to be located in centrosome. Is expressed in brain; pronephros; and retina. Orthologous to human BICDL1 (BICD family like cargo adaptor 1).

NR:

description
PREDICTED: bicaudal D-related protein 1

GO: NA

KEGG:

id description
K16756 BICDL, CCDC64; BICD family-like cargo adapter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803057.1 False 1980 mRNA 0.58 11 8173021 8204186
XM_039803058.1 True 2306 mRNA 0.57 10 8172560 8204063

Neighbor

gene id symbol gene type direction distance location
LOC120560501 mtmr3,LOC103152423 coding upstream 89186 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 94392 8055365 ~ 8078168 (+)
rad9b NA coding upstream 259040 7904789 ~ 7913520 (+)
LOC120560606 NA coding upstream 267966 7898563 ~ 7904594 (+)
LOC120560607 LOC106931442,LOC103152401,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 272036 7888678 ~ 7900524 (+)
LOC120560868 NA coding downstream 127199 8331385 ~ 8402569 (+)
LOC120560867 NA coding downstream 183636 8387822 ~ 8389118 (+)
LOC120560486 LOC107690107 coding downstream 260985 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 606368 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 657784 8861970 ~ 8907724 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding upstream 248004 7920777 ~ 7924556 (+)
G59839 NA non-coding upstream 525411 7646705 ~ 7647149 (+)
G59837 NA non-coding upstream 536506 7635595 ~ 7636054 (+)
G59826 NA non-coding upstream 541319 7630506 ~ 7631241 (+)
G59833 NA non-coding upstream 583930 7587795 ~ 7588630 (+)
G60082 NA non-coding downstream 22706 8226892 ~ 8227173 (+)
G60084 gcn1 non-coding downstream 27818 8232004 ~ 8238788 (+)
G60080 NA non-coding downstream 98072 8302258 ~ 8313113 (+)
G60109 NA non-coding downstream 120867 8325053 ~ 8326953 (+)
G60120 NA non-coding downstream 168080 8372266 ~ 8372551 (+)
cux2b cux2,LOC102795992 other upstream 121220 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 294189 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 542380 7625736 ~ 7630180 (+)
susd1 susd1 other upstream 548845 7600092 ~ 7623715 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other upstream 596424 7574725 ~ 7576136 (+)
LOC120560006 NA other downstream 219003 8423189 ~ 8427745 (+)
LOC120560007 NA other downstream 227351 8431537 ~ 8434672 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 787255 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 813705 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1722764 9926950 ~ 9981054 (+)

Expression


Co-expression Network