zgc:110329 (LOC103366798,LOC104939353,LOC104956029)


Basic Information

Item Value
gene id zgc:110329
gene name LOC103366798,LOC104939353,LOC104956029
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8810554 ~ 8836973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803061.1
TGGCCGGCCGTACGGAAGTGGTTGTTGTTTCGGTGGCTACATACAATAGCATGTGAGAAATGAGGGCTGCTACGTATTTAAAAttcagttaacgttagctgtcttAAAAGcgttttttatttcattaacaaTATTTGatgtttcattattattattattattatttttatattgccTGAACTAAACGAaggatagctagctagcttgttaGCTAGCTTTATTAATGTCAGCAGCCATGCCGTCCTACTCTGAATTGAGGAAAACCAACCACTTCTACTACTTCATCAAATTTACCTTGAATATCTACTCAATGCTCTTCTCGcTAATGGGTCTTTGTGTGCTGTGCGTGGGGGTGTATGCCGAAGTGGAGAGGCAGAAGAATCGAACCCTGGAGGGCCTTTTCCTGGCCCCTGCCGTGGTGCTGATACTGCTGGGCCTGGtgatgtttaccgtgtctgtGGTGGGCATGGTTGGATCCCTCCGGGACAACAAGACCCTGCTGCACATGTTCCTCTGTGTTCTCTGCGTGTTGCTGCTTCTCCAGGCAATCGGGCTCACCTTGGCTCTCATCTTTGAGAGCAAGACGTCTGCCTTGTTCCAGAGCAGTATACGAGAAGGAATTAAACACTACTACGATGATCTGGATTTCAAAAACATCTTGGACTATATGCAACAAAAGGTAGGGGAGGTTATGAACACTCTGTGTGGCTACAGGACTCTGGATAAAGAGCGTGCGACCCTGCATGAGCTGATCCATGTGCGAGGCTGCATCCATGCGGTCAACCTCTGGATGAGTGACAACATTGGAATAACCACTGCACTCTGCTGCGCCATCGGGCTGCCCCAGCTGCTGGGTATCGTCCTGAGCTGCATCTTCTGGAACCTGCTGGTGGACATGAGCGAGTCGGCCGACATGGTGGACTTCAAGCTGAAGAAGGCAGAGGTTGAGTACAGCGAGCTGGACCTGGCGGGCGCCGGCTGGTGTATGTGTCTTCCAAGGGACGGCGGCTACCTGCCCGTCCCCGCCGCCGAGCCTGACCTCGACCCCATCGATGTTCACCTGCTGAAGCTCAAGAAGCGGGCGCCTCGCACACACGCTCAGCTCCGAGAACTGCAGCAGTCCAGATCGGCCACTGGGCTGGACGAGGTAGACGCTAGCCGGAAGCAGAAAACGCCCTTTCATGCCTTTTGAGTTTTTgcctctttttattttatttcattatttttttttattttttttattcattgtaATCATTACATCTGTTGGAGTTGTGTTGCACTACGTAATGGTCAGCCATTGGATCAAGAAAGATTTGGTCAGCTAAAGGGATCAGAAGTACTTTGGCACTTTGttatgaatttgtttacaacaattgAAGGAACAACATGCAACATAggctttaaaaaacacttttcttttgTCGTGTTTGTGGTGGTTGTTATTCAAAGATTTATGGCATTATATGacatttgtatttaatttttttagccTTTGAAACTGAGCTATGTCTCATGTGCTAAAGCTTACCTCAGGCTGTTTTGAAAATAGCCCAGTAGTCAGAGGACAGTACTATTCGGTGTGTAAATTAATGGTAGCTTGAAAAGACGTTTTTCAGTGtctgagaaatagaaatagcaAAGTATGTCTTGCGTCTGTGACGGATGTATACAGTTTGTgtattatttccttttttttttttatcatgatttgaattttattttgtgCAATCGGTGTACATTGTAAGACTGGTAGTTGTGGAATAACATGGAATGCATgttttgtactgtatataaagtaagtttaaaaaagaaaagaaaaaaggaagtgtTGTTAGGCTCTCATCAGGGGGGGGGCTTTCAGTCTAttccattttaaaataaactttttattcAGTCTTTTAATGGAACACCTAAAGGGATTATCCAGACTACAAATCCAGTAAAAACCTACTCTATGACGTTTTTTTGTATCTGAGTTATGCACAGTTTTGAGCTTCCCCCTAGCTCCTGCCTTGTATCAGCACAGCTGTTGTCAATAAAGCTGAATTTGTCTACTGA

Function

NR:

description
tetraspanin-15-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803061.1 True 2058 mRNA 0.44 7 8810554 8836973

Neighbor

gene id symbol gene type direction distance location
LOC120560486 LOC107690107 coding upstream 328376 8465171 ~ 8482178 (+)
LOC120560868 NA coding upstream 407985 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 421436 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 606368 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 727180 8078302 ~ 8083374 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 24997 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 85310 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 102856 8939829 ~ 8965106 (+)
LOC120560490 abcb9 coding downstream 135313 8972286 ~ 8989363 (+)
tcima LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691 coding downstream 296574 9133547 ~ 9134580 (+)
G60223 NA non-coding upstream 25634 8784653 ~ 8784920 (+)
G60201 NA non-coding upstream 78632 8731713 ~ 8731922 (+)
G60189 NA non-coding upstream 163105 8647221 ~ 8647449 (+)
LOC120560290 NA non-coding upstream 212166 8597542 ~ 8598388 (+)
G60182 NA non-coding upstream 219081 8591253 ~ 8591473 (+)
G60232 NA non-coding downstream 17300 8854273 ~ 8929828 (+)
G60275 NA non-coding downstream 128532 8965505 ~ 8989713 (+)
G60273 NA non-coding downstream 152845 8989818 ~ 8991004 (+)
trnaq-cug_4 NA non-coding downstream 376269 9213242 ~ 9213313 (+)
G60363 NA non-coding downstream 445839 9282812 ~ 9283636 (+)
LOC120560007 NA other upstream 375882 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 382809 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 759214 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 932183 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 1180374 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 154468 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 180918 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1089977 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 1889465 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 1911143 10748116 ~ 10752440 (+)

Expression


Co-expression Network