LOC120560501 (mtmr3,LOC103152423)


Basic Information

Item Value
gene id LOC120560501
gene name mtmr3,LOC103152423
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8078302 ~ 8083374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803083.1
GGGTTGCCATTAGCCCAGAGCAGCCGTCCCGCAGCCATCTGGATGACGACGGGCTGACGCTGCACACGGACGCCATCCAGCAGAGGCTAAGGCAGATCGAGGCGGGACACCAGATGGAGGTGGAGACTCTGAAGAAACAGGTGCAGGAGCTGTGGAGCCGCCTGGAGAATCAGCAGCACGCCGGCTCccacaggatcaacggagacaTGGGAGACGAAGTGACCTCAATGACAGACTCTGAGTACAACCTGGACCCCAACTGTTTGTCGCGCTGCAGCACAGAGCTTTTCTCCGAGGCCAGCTGGGAGCAGGTGGACAAGCAGGACACTGAGGTGACTCGCTGGTACCCAGACCATTTGGCAGCCCAGTGTTATGGCTGTGAGAGCAGGTTCTGGCTCGCCACCAGGAGGCATCACTGCAGTGGCAGGGAGCCTGTCCAGGAGGTCTGGTGAGATCCGGCTCCCCTGTCCCTTCACCTTCCACCCTTTTTAACCTGGCATCGCTGCACCTCCCTCCTCCTAATCCTCAACCCCCCTTTCCCCTCCCTGCTCCTTCCCCTCCTCACCTGTTGCATCGGGTATTCCCTTCATTCTGTTGTAGTTGTCAGCAAATTCTCAGGGAAATTTCTCTTCATTTCTGAGATGTATTGACTTGAGTGTGCGTCCTGCTGCGCCAACGTGTTTCCATTTGGCGGTTTTAATTGGCTGTGCGTAAGCACGGTGCTGTCAGTGAGAGGGCTGTGATTGGTCGAGGGCTGATTGTTTAGATCAGATTTCCAGATCAGAAAAATtctaatcttaaaaaaaaaaaaaaaaaaaaactttcctcAAGTTCCTCAACCCTCCTCCTGCCTTAGCACCACATCAGCACCCtaccatcccaccaccctcaaCACACAACGCAGCAGCATGCTGCCCCAAACCAGCCATCTGCATCTCACCTCCCAGCAGCACAGCATGGTACTGGAGACCACTCAGTCCACCTGGTGGTGTGAAAAAGGCTGGAGACTCAGagtgaattatttttttatttatttttttctgctcagGGTGAGTACAGATAGTTAGTTAGAAGAGGCCGCtgtatgtgttagtgtgtgagCATGGCCTTACATCTTAATCTGAGCATGGGTATCGGAAACCTTCAGTGTGAGCTGCCTTCCTGTTTAGTGATGGTTAACGTGTTTTTTAATGGGCTGAATAATTAAGTTAGCACCGCTGAGTGTTAGAGCACCTTTTCTAACCCGGCATGTAGTGCAACATCACAGCAGAGTTGACCTGAGTTTTGCTCAGAACTCTCATTCCTTCTTTCCACCTGTTTTTATCATGCGTCCAaggcatagactgtatataaagatggactACCCATCTTCACTTCttcccactgtacaaaagtgaagccaaaatatcccggaTACAGCCGCTTCCATCTTGTAACTTTGGATCGGGCGGTATGAAAGTTCTGCCCATACACCCGCATGACCAATCCcgagtcaatcacagctgtcaatcatgacgtttcTCCCgaatacagtaccagtcaaaagtttggacacaatTAACTCATTCACTTGAATGGGAAAGCGTGCCCAAACTTTTATTAGTTTGGCCCAAATCCCATTTGCTTACATTGAGTGGGCGGGATTTATGACTTATACTGCAGCGGAAtcgagatgttttggcttcacttaaaCTGTCTATGCATCAACCCCTGGTCCAAGGTGATCGGATTGTAATCGGATGGAGCAACAACAGCAAAATAATTATCTGGAAATCCGTTTGTTCacaggagatacattttgacatCAGCATCCGGTTCTTTAAATGTGGTTTAACTGAATCAGGCTAACAGGATGTTAGCCGGCTAAAATGATCCCGTTAGTTCTCATCAACTTGGTCCTTCGAACACTATCAGAGGTTTGAAGTCTTTGATGGAGTCATGTTGAATAATAGTGcgctcttattttgaaataagGACAACATTATCAATGTAGTTCATGTGATTGTTTTTATGACTGGCTGAAATGGCACTAAAGCTACAGACACCGTTAACCTGCTGAGCAGCTGCAGTGGAAATGTGCCaagtctggtgatattctaCATTTCTAGAGAGCTCCACTGTTCTCCAGAAACTTTTGAAAACCCATCAATGAGacgttgcactgggtgacattttGACAACTGTAGTTCATTTCAGTTCATCTCACACCATCCTGCTGATGTAAATACTCACTTGTGCTCCAAATATGTATTaatccacagctgaaaataTTGCTACAAAAATTCCCTTTTTACTCCTGtacatttgctaaaaactactGTGCCCGGTTGTTAAACAGAATAGTtcacccatttaaaaaaatcttcagAATAGGACAGATTGACTAACATATTGTTGGTTTGGGATTATTGCTTGCCTTATCCTTTTTCCTAAAGCCGAgcaacattaaaaaacacaaaaaacacattttaagtgTGCAATAAACCCCTTCCAAGATCTGTCATGAAGCAGAATAAActtgaaaatgtatttctgtgtgtaatTTACCTGCAATGACAATGAATGATAGATTATTTCAATCCAACTGTACTCTACAATTTGTAAATTTCTTCCAATTGTGTGTTAAAATGGCAAATCCCcatcaaaatgtcataaataaCCACCACGTTTTTGAGTCATTTGTATCGGAAAAATAAGCTGATGTATGAAACTTTTAAAGGGGTAGAAAAGTCATCCAGATAACGACCAATGAGCCTGCACTTTTGCAGCTCTAGATAAACCTGCTTTGAATATATTTGAAATGAAGCGAACTCCGTTTTTGCATGTACGAAGAACAGGGCCCGGTGCAAATGTAAAGGAGTAGAATTGCATGCAAAGGAGACGCATGGTAACTGTAGGTGTAAAGCGGCTCCGTCTGAGAGTCCAGTTGGTGACCTGTCCGTGTCTCCCTGCAGGAACTGCGGTAACGTGTTCTGTGCCAGCTGTTGCGACCAGAAGATCCCAGTGCCAAGCCAGCAGCTGTTCGAGCCCAGCCGCGTCTGTAAGACCTGCTACGGCAGCCTCAAGCTCAGCCCGGCTcc

Function

symbol description
mtmr3 Predicted to enable phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity; phosphatidylinositol-3-phosphatase activity; and protein phosphatase binding activity. Predicted to be involved in phosphatidylinositol dephosphorylation and regulation of autophagy. Predicted to act upstream of or within dephosphorylation and lipid metabolic process. Predicted to be active in cytoplasm and membrane. Orthologous to human MTMR3 (myotubularin related protein 3).

NR:

description
PREDICTED: myotubularin-related protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803083.1 True 3080 mRNA 0.46 4 8078302 8083374

Neighbor

gene id symbol gene type direction distance location
mtmr3 mtmr3 coding upstream 134 8055365 ~ 8078168 (+)
rad9b NA coding upstream 164782 7904789 ~ 7913520 (+)
LOC120560606 NA coding upstream 173708 7898563 ~ 7904594 (+)
LOC120560607 LOC106931442,LOC103152401,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 177778 7888678 ~ 7900524 (+)
ift81 ift81 coding upstream 232497 7821305 ~ 7845805 (+)
bicdl1 bicdl1 coding downstream 89186 8172560 ~ 8204186 (+)
LOC120560868 NA coding downstream 248011 8331385 ~ 8402569 (+)
LOC120560867 NA coding downstream 304448 8387822 ~ 8389118 (+)
LOC120560486 LOC107690107 coding downstream 381797 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 727180 8810554 ~ 8836973 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding upstream 153746 7920777 ~ 7924556 (+)
G59839 NA non-coding upstream 431153 7646705 ~ 7647149 (+)
G59837 NA non-coding upstream 442248 7635595 ~ 7636054 (+)
G59826 NA non-coding upstream 447061 7630506 ~ 7631241 (+)
G59833 NA non-coding upstream 489672 7587795 ~ 7588630 (+)
G60082 NA non-coding downstream 143518 8226892 ~ 8227173 (+)
G60084 gcn1 non-coding downstream 148630 8232004 ~ 8238788 (+)
G60080 NA non-coding downstream 218884 8302258 ~ 8313113 (+)
G60109 NA non-coding downstream 241679 8325053 ~ 8326953 (+)
G60120 NA non-coding downstream 288892 8372266 ~ 8372551 (+)
cux2b cux2,LOC102795992 other upstream 26962 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 199931 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 448122 7625736 ~ 7630180 (+)
susd1 susd1 other upstream 454587 7600092 ~ 7623715 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other upstream 502166 7574725 ~ 7576136 (+)
LOC120560006 NA other downstream 339815 8423189 ~ 8427745 (+)
LOC120560007 NA other downstream 348163 8431537 ~ 8434672 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 908067 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 934517 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1843576 9926950 ~ 9981054 (+)

Expression


Co-expression Network