LOC120560506 (nefh,LOC102784691)


Basic Information

Item Value
gene id LOC120560506
gene name nefh,LOC102784691
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18306898 ~ 18311633 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803089.1
CCTGCTGCAGTCAGTTCTCATCCGGCCCAGCCAACATGAGTTACACGGTAGAGCACCATCTCTTCGGCCCGACCTCGTACCGCAAGGCTCGGCCTGCCTCCGTGTCCTCCAGCGGCTTTCACTCCCAGCGCCGCCGCCTCACCTACAGCCAGCCATCCTCCGTGGACAGCTTGGAGACCTTCAACGGCGACATGACACGGAGGAACGAGAAGGAGATTCTGCAGACCCTGAACGACCGGTTCGCCGGCTACATCGACAAGGTGCGCAACCTTGAGATGCACAACCGCAACTTGGAGGCGGAAGCGGCAGCTCTGCGGCAGAGCCAGGCCGGGCGCACCTCGGTTGGGGAGCACTACGAACGAGAGCTGGGCGACCTGAAGGGTCTCCTGCAGCAGCTGACCGGGGAGAAGGCCCGCGCAGCTCTGGAGCACGATCACCTGGAGGAGGACATCCAGCACCTACGGGCCAGACTGGAGGATGAGGCGCGGAACCGGGATGAGTTGGAGGCTGCCGCCCGCGCCATGAAAAAGTATGCTGAGGAGTGCCGGCTGGCGCGTATGGAGCTGGACAAGAAGCTCCGCTCCCTGGAGGAAGAGGCCGTTTTCCTGAAGAAGAACCACGAGGAAGAAGTGGCTGAACTCCTCGATCAGATTCATGGCGCGCAGGTAAGCTTCGACATGCGGGACGCGCTCAAGGCGGACGTCACCGGCGCCCTGCGAGAGATCCGTGCGCAGCTGGACGGTCACGCATCCAAGAGCTCAACGCACGCGGAGGAATGGTTCAAAGTGCGTATGGAGCATCTGTCTGAAGCTGCTAAGTCCAACCAGGATGCAATTCGTGGAAGCCAGGACGAGATCGCAGACTACCGCCGTCAGCTCCAGAGCCGCACCATCGAGCTGGAGACTCTTCGGGGAACCAAGGACTCACTTGAGAGGCAGCGTATGGAGAGTGAAGACAGACACCACGATGAACTCAACTCACTACAGGAGGCCATCAATCAGCTGGACAATGAGCTGAAATCCACCAAATGGGAGATGGCCAGCCAGCTGAAAGAATATCAGGAGCTGCTGAATGTGAAGATGGCTTTAGATATTGAGATTGCTGCTTATAGGAAGTTACTGGAAGGAGAGGAGAATCGCTTTGTGTCAGGAGGAGGCCCGTACTCTTACCTGGAGAGCAGAATCTCTTCCCACTTGAAAGTGAAAGGAGAGGAGATCTCAGATACCGTCATCGTGGAGGAACAGACCGATGAGACCCAGGTGACTGAGGTGACAGAGGAGgcagatgaggaggaagaggagggagagaaagaagacgATGAGGAAACcaaagaagaggagggagaaggtGAGGAAGGAGAAGataaggaggaggaaggagagggcgaagaagaaaaggaggaggaagcaaagggagaggaggagaaggatgaggaggagaaggatgaggagaagggagaggaagaggaggcaggtgaagaagaagagaagtcCAAATCTCCAGAAAAGGCTGCATCCCCTGAGCCTAAATCTCCTGCGGTCAAATCCCCAGAATCTAAATCCCCACAAAAATCCCCAGAATCTAAATCACCACCAGCCAAATCCCCGATGCCCAAATCACCCGCTAAGTCGCCTGCAGGAGATGATTCAAAGTCACTTGTTTCACCCAAATCTCCTGAATCTAAATCTCCTCGTCCCAAGACCCCTGAACCACAGTCTCCAGAAAAAGAGAAGGCCAAGCCTGCCACCGCCAAAGACACCCcgaaagaggagaaaaaagaggAGAAGCCTGTCaaggaggaaaagaaggagaaagaacAACCCGTGAAGGAAGAGAAGAAGCAAGAGCCCAAGGAGACAGAGCCAGAGAAGGCAGACAAACCTGATTCGAAGAAAGAAAGCAAGGCAGATGAAGCTACAAAGACAGATGGCGCTTCGAAACCTGCTGCTCCCAGCAAACCCGCAGAGGATAAACCTGCCCCCAAGTCTGAGCCTAAAGAGAGTGCTCCCCCCGCCAAGGAGGAGAAACCCTCGACTCCTAAATCAGAGAAGGCCGAGCCCGAGGCAAAGCCTGCCCCTAAAGCAGAGCCCGAGAAAACAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGTCCGCACCTAAAGCCGAACCCCAGAAAACAGAGAGCAAGAAAGACGAGAAGAAGCCAGAGGCGGAAAAGGAGACTAGTAAAGAAGAGAGTAAAGAGgtgaaggatggagggaaggcGGAGAAATCTTCGGGCACCGAGTCAAAGGAGAGCAAGGAGGAGAAGGCCAAGAAGTAAGACGGATAACCTGTGATTCAAGGCACGACGAGAGGAGGTGGAGATGCCAAAGAACTATGAAGGAAGGCAGGGTAAAGAGCAGGAGAAAGGGACTGGATGCACCCAGCTGTTCAGATGGGCGCTTTAATGTCCAAAGCAAAGCAGGTGATGCTATGTAAGCAATAGTGatttctgtagcaaataacccCCTGCTCCCCAAGTATGGCCATTACATACCCCTGATGCTTCTGATGTATGACTGTAGTGAATGCAGAATGCTCTAAACTCTTTATCTGAATGTGATAACTGCCCTTAATAAATAACAAGTGCATTTAAACTGAATCCCACTGACGGGGACCGCAGGGGCCTGCTGTACCTACACAAGCCTTCAAGGGTAGATATTTCAAAACAATGTCAAGCTAAAGATTGTGACAGATattgaatataaaaacatatatttaagGATATACAAAtgtctataatatatatatatatattatatttacagATACATCAGTAAGAAAGACTTGAATTTTGCTTGTTTAATGCAGCTTCTCCTGATGGTGAACTGCCCTGTCTCACTTTTTTGGTCTGCAATGCTAGGACAATGATGACTATGTGTTATGTATAAACTGCTGAGAATATGCAATATAAAACAGATAAATAAAGAATGAAAAATCAAACACAAAA

Function

symbol description
nefh Enables protein kinase binding activity. A structural constituent of cytoskeleton. Involved in axon development; neurofilament bundle assembly; and regulation of organelle transport along microtubule. Located in cytoplasm; cytoskeleton; and neurofibrillary tangle. Implicated in Charcot-Marie-Tooth disease axonal type 2CC; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 1; and monoclonal gammopathy of uncertain significance. Biomarker of Creutzfeldt-Jakob disease; autoimmune disease of the nervous system (multiple); and optic neuritis.

NR:

description
PREDICTED: neurofilament heavy polypeptide

GO: NA

KEGG:

id description
K04574 NEFH, NF-H; neurofilament heavy polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803089.1 True 3026 mRNA 0.52 4 18306898 18311633

Neighbor

gene id symbol gene type direction distance location
akr1a1a LOC103357443,LOC100534433 coding upstream 19616 18282370 ~ 18287282 (+)
dnajb5 dnajb5,LOC102783367 coding upstream 26786 18270719 ~ 18280112 (+)
epg5 epg5 coding upstream 38317 18245501 ~ 18268581 (+)
LOC120560024 lix1 coding upstream 62125 18239308 ~ 18244773 (+)
riok2 riok2 coding upstream 68899 18232728 ~ 18237999 (+)
srrd srrd coding downstream 15331 18326964 ~ 18328537 (+)
ddhd2 ddhd2 coding downstream 33921 18345554 ~ 18357632 (+)
LOC120560725 NA coding downstream 54112 18365745 ~ 18382595 (+)
si:ch211-113d22.2 LOC106098714,LOC103357453,LOC102788116 coding downstream 71316 18382949 ~ 18386253 (+)
si:ch211-204d2.4 plekha2 coding downstream 77478 18389111 ~ 18400741 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding upstream 9995 18293260 ~ 18296903 (+)
G62406 NA non-coding upstream 179153 18127536 ~ 18127745 (+)
G62372 NA non-coding upstream 250749 18054799 ~ 18056149 (+)
G62344 NA non-coding upstream 366052 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 493085 17813589 ~ 17813813 (+)
G62502 thoc5 non-coding downstream 1578 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 9010 18320643 ~ 18321158 (+)
G62533 NA non-coding downstream 53647 18365280 ~ 18388485 (+)
G62540 NA non-coding downstream 145865 18457498 ~ 18459249 (+)
G62557 NA non-coding downstream 186330 18497963 ~ 18498301 (+)
setbp1 setbp1,LOC102781608 other upstream 177829 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 277512 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 295868 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 734193 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 892303 17285648 ~ 17414595 (+)
G62513 NA other downstream 19072 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 95715 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 129714 18441347 ~ 18474731 (+)
acacb acacb other downstream 349524 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 425885 18737518 ~ 18742399 (+)

Expression


Co-expression Network