thoc5 (thoc5)


Basic Information

Item Value
gene id thoc5
gene name thoc5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18313375 ~ 18321149 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803090.1
ttggcACAGCAGAGCTTCCGTTCGTCTTCGGCGCTTTGCGGTTGAGGGTTAAACAAAGTATCCTGTGCATGTGCATTTGCGCACGATTTAAGGATTCCAGGTGTTTTTGTGTACCAAGAAGccaccccccccccccatgtcgTCGGACGCCCTGAAGAAGCGAAAGTCTAAGGTTCTCCGCAGTGAAGGAGGAACCCCAGAGATGAAGCGAGGTCGCGGGGAAGGGGACCACCAGGATATGCGAGTGTATAGTGAGGAAGTGGAGCTGGACAGCAGGGACCCTGAGCAGGACTTCCTGCAGTACAAAGAGTCATGCGAGAGTTTGGCCACACTCATGAGTGAGATCCAGGAGCTGAAAGCGAATGGAGCCAAGGAGGGGTGTGCTGAGGTCGAGCAGAGACGTATGCAGAGCTGCATCCACTTCATGAATCTGAAAAAACTCAATCGTCTGGCTCACATGCGACTAAAGAGAGGCAGAGACCAGACACACGAGGCAAAGCAGAGGGTGGATGTGCTGCACCTTCAGTTACAGAACCTGCTGTATGAAGTTATGCATCTTCAGAAGGAGATCAGCAAGTGTCTGGAGTTCAAGTCTAAGCATGAGGAGATAGACTTGGTGTCTGAGGAAGCATTTTACCAGGAGGCGCCACAGGAAATTTCCAGGCCTCACATCACAAAAAATGATCCCCACCAGCTCACACTGGCACGACTGGACTGGGAGCTTGAACAGAGGAAGAGGTTGGCAGAAGAATACAAGGAGTCCCTGGCCACAAAAGAGAAGATCCATAAGAGCATCGAGGTGAAGAAGGAACATCTGACAAGCTTGCAGCCAGGACTCAATGCCATCATGCAGGCCTCTCTCCCGGTGCAGGAGTATCTGTCCATGCCTTTTGAGCAGGCTCAGATACAGACAGAGGTTGCCCGCCACCTGCCTCCACCTCTCTATGTCCTGTTTGTTCAAGCCAATGCCTATGGCCAGGCCTGTGACAAAAACCTGAGTGTCTCAATAAGTGGTGATGTGGATGAGGCCAAGGCCCTGTCCAAACCTCCAGAAGATTCCCAGGATGATGAGAGTGACTCAGATGCAGAGGAGGAGCAAGAGAAAACGAAGAGAAGAAGGCCAACTACAGGTGGCCAGCTGGATGAAAAAAGACGGGAGATGCTGAAAAAgcaccctctgtctctctgcttaGACCTCAAGTGTAAAGATGGCAGCATCCTCCATCTCTTCTtctactacctgatgaatctcAACATTATAACCGTCAAGACCAAGGTCTCCACCTCCACAGACCTCAACTCAGCCATCAgcgcaggGGACCTGCTGAAATCAGACACTCTACTCAGCTGTCTCTACGCCAGCGACCAGGGACGAGAAACGCCCAATCCAGCTAATCGCTACCAGTTTGATAAAGTCGGGATTGTTTCCTTTGCTGACTATTTGGAGGAGCTGGGCCATCCCTACATGTGGGTTCAGAGTCTAGGAGGACTACATTTTCCCAGAGATCCTTCAGAGAGTGTGCAGGTGGGCAGTTCTTTGAGTGCCAGCCACATGGAGACCACCATGAAGCTGCTGAGGGGAAGACTCCAGTCTCGCTTGGCTTTGCACAAACAGTTTGCCTCTTTAGAGCACAGCATCATCCCAGTCTCCAGTGAGTGTCAGCACCTCTTTCCTGCCAAGATCCTCTCCCGTTTAACTCGCTGGACCACTACCACTCAGCAGGAGTACATGGATCTGCCATTTACTCGACATGTGACTGATGCCGGGATGGCAAAGGAGACTGATATGTACTTCATGGCTGTGGTGGAAAGGGGCACAGCTCATCTCCAGGCCGCTGTTGTGCTGAATCCCCGTTACCCAGAaatccctcctctcttctcacTCTCGCTCAGCTGGAAGGGAGAGCGCAGTGGACGCACTGATGACAACCTCAGAgccATGGAGAGTGAGGTCAATGTGTTCAAAAAGGAACTACAGGGGCCACGTCCAGGACACCAGCTCCTGACCAATCAAATTTCAcgcctgtgtgtctgcctggatGTGTATTTGGAGACAGAAGGACAAGATGACAGCGTGGAGGGACCACGAGAGTTTCCCAGAGAAAAGATGTGCCTGCGCACTGTCAGGGGTCCAAATCGTCTGAAGCCATTCAAGTACAACCACCCTCAGGGCTTCTTCAGTCACCGCTAGATTTGTCCATATGATTCTCACTGCTGTACTTTACAACTTTAACTCCCTAAAGCTTACCTTTGTGGCTCTTTGACACACAAAGTATCTCTTTTTAAAAGTCTTTTTacctgtttaaaaataaaagaaaacaccatGTTATTTTCTTGAA

Function

symbol description
thoc5 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus and positive regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within RNA processing; cell differentiation; and mRNA transport. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of THO complex part of transcription export complex. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human THOC5 (THO complex 5).

NR:

description
PREDICTED: THO complex subunit 5 homolog

GO: NA

KEGG:

id description
K13174 THOC5; THO complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803090.1 True 2339 mRNA 0.51 20 18313375 18321149

Neighbor

gene id symbol gene type direction distance location
rgmb rgmb,LOC104943770 coding downstream 130470 18173443 ~ 18182905 (-)
erap2 erap2,LOC104943769,LOC100692736,LOC102782494 coding downstream 142617 18163106 ~ 18170758 (-)
LOC120560293 lnpep coding downstream 151048 18147120 ~ 18162327 (-)
cdk7 cdk7 coding downstream 247978 18059560 ~ 18065397 (-)
serinc5 serinc5,LOC102781024 coding downstream 262918 18029439 ~ 18050457 (-)
tfip11 tfip11,LOC102785266 coding upstream 405 18321554 ~ 18326918 (-)
si:ch211-166a6.5 LOC104947816 coding upstream 11945 18333094 ~ 18344523 (-)
slc8b1 slc8b1 coding upstream 134078 18455227 ~ 18462329 (-)
LOC120560133 LOC103357459,LOC104947821 coding upstream 142054 18463203 ~ 18469696 (-)
morc2 morc2 coding upstream 149006 18470155 ~ 18487380 (-)
G62493 NA non-coding downstream 9019 18304157 ~ 18304356 (-)
G62452 riok2 non-coding downstream 77689 18234605 ~ 18235686 (-)
G62399 NA non-coding downstream 257232 18055251 ~ 18056143 (-)
G62339 NA non-coding downstream 379907 17931742 ~ 17933468 (-)
G62333 kif2a non-coding downstream 386420 17914926 ~ 17926955 (-)
G62567 NA non-coding upstream 8454 18329603 ~ 18329892 (-)
G62568 NA non-coding upstream 10235 18331384 ~ 18332396 (-)
G62571 NA non-coding upstream 34093 18355242 ~ 18357753 (-)
G62586 plekha2 non-coding upstream 73687 18394836 ~ 18397946 (-)
G62629 NA non-coding upstream 200415 18521564 ~ 18521875 (-)
fancg fancg other downstream 9513 18297593 ~ 18303862 (-)
LOC120560503 vcp,LOC102783844,LOC103357444,LOC107393925,LOC107552546 other downstream 16671 18287289 ~ 18296704 (-)
pip5k1bb pip5k1b,LOC104956915 other downstream 417478 17853406 ~ 17895897 (-)
LOC120561236 LOC102290490,LOC106517513 other downstream 708255 17598088 ~ 17605120 (-)
LOC120560614 NA other downstream 745361 17534483 ~ 17568014 (-)
G62580 tacc1,LOC101470878,LOC102206806 other upstream 56453 18377602 ~ 18380502 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other upstream 61856 18383005 ~ 18386269 (-)
iqcd NA other upstream 116527 18437676 ~ 18443018 (-)
zgc:158398 NA other upstream 167013 18488162 ~ 18492407 (-)
G62626 LOC103357464 other upstream 189006 18510155 ~ 18512261 (-)

Expression


Co-expression Network