LOC120560514 (LOC107752212,LOC107675959,LOC107679452)


Basic Information

Item Value
gene id LOC120560514
gene name LOC107752212,LOC107675959,LOC107679452
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13059490 ~ 13060793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803114.1
GCTAAAAGTTCAGGTTGGATGCATGATGTtgactttctttcctttcttcagCACTTTGCCAGACACACCCGTGTGAACCTGGACTCGAAGGTGCTGCTCCTCCTTGACAATCACTGGTCACACCTTTCTGTGGCAGCAATTGACTTTTGTCGGTCAAACGGCATAGTCCTCCTATCTTTCCCGCCCCACTGCTCACATCGTCTCCAGCCGCTCGACAGGAGTGTGTTCGGTCCAGTGAAGCGATATGTTAACACAGCAGCAGATCACTGGATGAGAACACAACCTGGAAAAACGTTGACCATATACGACATCCCAATCCTAGTGACCACAGCTCTGCCACGTGCAGCAACACCCAGCTACATCACATCTGGCTTTGTATGCATTGGCATCTGTCCTTTCAACCCAGATATTTTTGAGGAGCAAGACTTTTCACCTGCATATGTCACTGACCGCCCAGTTCCATGTGTAGGCCTACCATGTGCTCCCACACCACATTCTAACACAAACCCATACAGCCAGAGCCTATTTGAGGGAGGACTTCTGCCAGAGTATCCTGCTGGTTCAACCAGGGACACCTGTTTAGAGTCTGCCATCCCTGACCACCCAGCTGTCTGTTCAGCTGTCCCTCCTGAAGAAAGGGGAAGAGGTATGCTTGAGGTAAGTCATACTAGTCCATGTCTGTTCATTCCAGAAGCTGTACGTCCCTTCCCTAAGGCTGGTCCGAGAAAGGACACAAAACGGAGAGGCAAAAGGAGGTCAACGGCGATCCTCACTGACTCTCCGGTGAGGGCAGCTCTGGAGGAGGAGCAACAGAAGAGGatccagaagaagaagaagccccAGAAGAAGCTGCCTGCTCCAAAGAAAAGGTTCCTCACGGTCGAAAACACTGCACCCACAGTTTCCTCGGACAAGGATGAGGAATCTCTTGTGTGTGAGGAAACATTCAGCTCATCCTTGCCTGGGGAAGTGTGGGTTCAGTGTCTCTTTTGCCAGCTCTGGTCACATGAGGCATGCACTGAGCGTGCAGAACAATATATCAGTCACAACTGTGACAATGAGTAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107752212 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803114.1 True 1065 mRNA 0.51 3 13059490 13060793

Neighbor

gene id symbol gene type direction distance location
LOC120561259 NA coding downstream 21043 13036828 ~ 13038447 (-)
LOC120561258 NA coding downstream 27573 13025415 ~ 13031917 (-)
LOC120561256 NA coding downstream 111135 12944844 ~ 12948355 (-)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 135785 12921169 ~ 12923705 (-)
LOC120561416 entpd2 coding downstream 367144 12673697 ~ 12692346 (-)
LOC120561257 NA coding upstream 23690 13084483 ~ 13094496 (-)
LOC120561314 nr5a1,sf-1 coding upstream 589099 13649892 ~ 13686906 (-)
nr6a1a nr6a1 coding upstream 679560 13740353 ~ 13864440 (-)
LOC120559998 NA coding upstream 902350 13963143 ~ 13972136 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding upstream 1046610 14107403 ~ 14142258 (-)
G61161 NA non-coding downstream 52031 13007246 ~ 13007459 (-)
G61154 NA non-coding downstream 81461 12977752 ~ 12978029 (-)
G61151 NA non-coding downstream 84344 12974889 ~ 12975146 (-)
G61119 NA non-coding downstream 184874 12836649 ~ 12874616 (-)
G61193 NA non-coding upstream 120794 13181587 ~ 13182319 (-)
G61195 NA non-coding upstream 121797 13182590 ~ 13184478 (-)
G61205 NA non-coding upstream 216400 13277193 ~ 13277633 (-)
LOC120560090 NA non-coding upstream 265783 13326576 ~ 13327712 (-)
LOC120561378 NA non-coding upstream 326683 13387476 ~ 13390549 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 504205 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 997844 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 1465830 11285385 ~ 11593660 (-)
G60715 NA other downstream 1869749 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 2540523 10122152 ~ 10518967 (-)
G61264 NA other upstream 528246 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 1267358 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 1878182 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 1883703 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 1887966 14948759 ~ 14948830 (-)

Expression


Co-expression Network