figla (figla)


Basic Information

Item Value
gene id figla
gene name figla
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6951936 ~ 6968096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803115.1
GGTCCTGCGTTCTCTCGCAGCTCTTCTCCTTCCTTTGATGTTGACTTGAGAACATGActtgaaattaaaaataatttacagaAGCAACCGATTATCGAGTCTAACATTTGTTACTTGTTAAAATGAAGGTGCCAGAGGAGGAATTAATGAGCGATATTTTGAAGCGGTTGACGGGCGAGTCTGCACTCCCTGCATACAGCAACATTGAAAAGTTCAGACGAGGAAAGGACGGCTTATACTTCGTCGCGGAGGACTTTCatgaaactgtgaaaaaaagggaaTTGGTCAACGCCAAGGAACGACTAAGAATCAGGAACTTGAACCACATGTTCACCCGCTTGAAGCGAATGGTGCCACTAATGCGACCTGACCGCAAGCCCAGTAAAGTGGACACACTCAAAGCTGCAACAGAATACATTCGATTACTTGTTGCAGTTTTGCAGGACACTGCCAGTGATGGTGGCAGTGGGACTGATTTCCTAAAGAAAGCAATCACTTATGGTCAGAATGACGGCTTGGGCAACGACCTATGGAGAGTGGATGATttgCTGAGCTTGTCAGAGGAGCGCATGGAAGATGGTTTCACCATGACCCCGGAACCGGTATCTGAGGATGGAGATATGAGCAGACTGGTGTTGCAACATTGTGTGATGCCTGCATACCAGTTCATCATTCAAGTAGCACCGGATCAGACTTTGATGAAACTGTTGCCATGGCTGAACCTGCCATGGAACGCTGCGGCCTGCTTGTCTGTTGTGTGGGATTTGTTGACCGCAGGGCGCTTCAACCATTTTGCAGTTGgaggaaaagaagaagaagaagaagaaggaggaggaatggATAGCCAGGTGGAAGGAAAAGTGACTCCATTCTGGGATGGGCTGCCAACCACTCTTTGACTGGCAGAAAATGGTGAAACGCTACACTGACAATTACAAAAGGTCCCCTTTCCTCATCTGGCACGAGTCTGCAAGTACTAGAAGTCATCAAGGAAACCCAAAAAGAGGCGCTCAGTGTTGTATgtttatgcatttttatttttattccttttattgATGAAGCAGAATGTAGCAAGTTGCAGTTTCATTTATGGTAATTTTGTGTTGGTGGGGGTTAAGTTTGAGTCAATTTGGATGAAATGTAATCCACAGTTTAGTCCACATTGTCTtctgttgtgctaactgtgtagagagttaaacaataaaaattaaaaaagtgaaCTCCGTATTGAGAAATGCGTGTTACCAATTGTTAAAATGCCAActtgggtactctagctatataattcaatgtgagtacacaaatgttgaaatgacataaaatgtctccatctttcaaatacatctccaatatttacctgtGGTTTGTAGCGTCTCTGGTCATGCAACTGTTTGTTTTGCACTGTTTTTTGCACAGTACCTTTTTTGAAAAGGTATCTGGAAGTCTGGAATGTGTCTGtgacatagactgttaatatacagtctatggtctgggGACACTAGTTGTTGCACTTGACCAATGACCATTAATAGCGCTTTATGTTCTATGCT
>XM_039803116.1
GAACACAGCTGACCGGTAAAAGGATTTAATTCAACTCACAACAGCGGCAGCTTCAGTTTCTTCAGGGCCTAATTAAGCACGTAGCACAGGTGCCAGAGGAGGAATTAATGAGCGATATTTTGAAGCGGTTGACGGGCGAGTCTGCACTCCCTGCATACAGCAACATTGAAAAGTTCAGACGAGGAAAGGACGGCTTATACTTCGTCGCGGAGGACTTTCatgaaactgtgaaaaaaagggaaTTGGTCAACGCCAAGGAACGACTAAGAATCAGGAACTTGAACCACATGTTCACCCGCTTGAAGCGAATGGTGCCACTAATGCGACCTGACCGCAAGCCCAGTAAAGTGGACACACTCAAAGCTGCAACAGAATACATTCGATTACTTGTTGCAGTTTTGCAGGACACTGCCAGTGATGGTGGCAGTGGGACTGATTTCCTAAAGAAAGCAATCACTTATGGTCAGAATGACGGCTTGGGCAACGACCTATGGAGAGTGGATGATttgCTGAGCTTGTCAGAGGAGCGCATGGAAGATGGTTTCACCATGACCCCGGAACCGGTATCTGAGGATGGAGATATGAGCAGACTGGTGTTGCAACATTGTGTGATGCCTGCATACCAGTTCATCATTCAAGTAGCACCGGATCAGACTTTGATGAAACTGTTGCCATGGCTGAACCTGCCATGGAACGCTGCGGCCTGCTTGTCTGTTGTGTGGGATTTGTTGACCGCAGGGCGCTTCAACCATTTTGCAGTTGgaggaaaagaagaagaagaagaagaaggaggaggaatggATAGCCAGGTGGAAGGAAAAGTGACTCCATTCTGGGATGGGCTGCCAACCACTCTTTGACTGGCAGAAAATGGTGAAACGCTACACTGACAATTACAAAAGGTCCCCTTTCCTCATCTGGCACGAGTCTGCAAGTACTAGAAGTCATCAAGGAAACCCAAAAAGAGGCGCTCAGTGTTGTATgtttatgcatttttatttttattccttttattgATGAAGCAGAATGTAGCAAGTTGCAGTTTCATTTATGGTAATTTTGTGTTGGTGGGGGTTAAGTTTGAGTCAATTTGGATGAAATGTAATCCACAGTTTAGTCCACATTGTCTtctgttgtgctaactgtgtagagagttaaacaataaaaattaaaaaagtgaaCTCCGTATTGAGAAATGCGTGTTACCAATTGTTAAAATGCCAActtgggtactctagctatataattcaatgtgagtacacaaatgttgaaatgacataaaatgtctccatctttcaaatacatctccaatatttacctgtGGTTTGTAGCGTCTCTGGTCATGCAACTGTTTGTTTTGCACTGTTTTTTGCACAGTACCTTTTTTGAAAAGGTATCTGGAAGTCTGGAATGTGTCTGtgacatagactgttaatatacagtctatggtctgggGACACTAGTTGTTGCACTTGACCAATGACCATTAATAGCGCTTTATGTTCTATGCT
>XM_039803117.1
GGTCCTGCGTTCTCTCGCAGCTCTTCTCCTTCCTTTGATGTTGACTTGAGAACATGActtgaaattaaaaataatttacagaAGCAACCGATTATCGAGTCTAACATTTGTTACTTGTTAAAATGAAGGTGCCAGAGGAGGAATTAATGAGCGATATTTTGAAGCGGTTGACGGGCGAGTCTGCACTCCCTGCATACAGCAACATTGAAAAGTTCAGACGAGGAAAGGACGGCTTATACTTCGTCGCGGAGGACTTTCatgaaactgtgaaaaaaagggaaTTGGTCAACGCCAAGGAACGACTAAGAATCAGGAACTTGAACCACATGTTCACCCGCTTGAAGCGAATGGTGCCACTAATGCGACCTGACCGCAAGCCCAGTAAAGTGGACACACTCAAAGCTGCAACAGAATACATTCGATTACTTGTTGCAGTTTTGCAGGACACTGCCAGTGATGGTGGCAGTGGGACTGATTTCCTAAAGAAAGCAATCACTTATGGTCAGAATGACGGCTTGGGCAACGACCTATGGAGAGTGGATGATttgCTGAGCTTGTCAGAGGAGCGCATGGAAGATGGTTTCACCATGACCCCGGAACCGGTATCTGAGGATGGAGATATGAGCAGACTGGTGTTGCAACATTGTGTGATGCCTGCATACCAGTTCATCATTCAAGTAGCACCGGATCAGACTTTGgaggaaaagaagaagaagaagaagaaggaggaggaatggATAGCCAGGTGGAAGGAAAAGTGACTCCATTCTGGGATGGGCTGCCAACCACTCTTTGACTGGCAGAAAATGGTGAAACGCTACACTGACAATTACAAAAGGTCCCCTTTCCTCATCTGGCACGAGTCTGCAAGTACTAGAAGTCATCAAGGAAACCCAAAAAGAGGCGCTCAGTGTTGTATgtttatgcatttttatttttattccttttattgATGAAGCAGAATGTAGCAAGTTGCAGTTTCATTTATGGTAATTTTGTGTTGGTGGGGGTTAAGTTTGAGTCAATTTGGATGAAATGTAATCCACAGTTTAGTCCACATTGTCTtctgttgtgctaactgtgtagagagttaaacaataaaaattaaaaaagtgaaCTCCGTATTGAGAAATGCGTGTTACCAATTGTTAAAATGCCAActtgggtactctagctatataattcaatgtgagtacacaaatgttgaaatgacataaaatgtctccatctttcaaatacatctccaatatttacctgtGGTTTGTAGCGTCTCTGGTCATGCAACTGTTTGTTTTGCACTGTTTTTTGCACAGTACCTTTTTTGAAAAGGTATCTGGAAGTCTGGAATGTGTCTGtgacatagactgttaatatacagtctatggtctgggGACACTAGTTGTTGCACTTGACCAATGACCATTAATAGCGCTTTATGTTCTATG
>XM_039803118.1
GGTCCTGCGTTCTCTCGCAGCTCTTCTCCTTCCTTTGATGTTGACTTGAGAACATGActtgaaattaaaaataatttacagaAGCAACCGATTATCGAGTCTAACATTTGTTACTTGTTAAAATGAAGGTGCCAGAGGAGGAATTAATGAGCGATATTTTGAAGCGGTTGACGGGCGAGTCTGCACTCCCTGCATACAGCAACATTGAAAAGTTCAGACGAGGAAAGGACGGCTTATACTTCGTCGCGGAGGACTTTCatgaaactgtgaaaaaaagggaaTTGGTCAACGCCAAGGAACGACTAAGAATCAGGAACTTGAACCACATGTTCACCCGCTTGAAGCGAATGGTGCCACTAATGCGACCTGACCGCAAGCCCAGTAAAGTGGACACACTCAAAGCTGCAACAGAATACATTCGATTACTTGTTGCAGTTTTGCAGGACACTGCCAGTGATGGTGGCAGTGGGACTGATTTCCTAAAGAAAGCAATCACTTATGGTCAGAATGACGGCTTGGGCAACGACCTATGGAGAGTGGATGATttgCTGAGCTTGTCAGAGGAGCGCATGGAAGATGGTTTCACCATGACCCCGGAACCGGTATCTGAGGATGGAGATATGAGCAGACTGGTGTTGCAACATTGTGTGATGCCTGCATACCAGTTCATCATTCAAGTAGCACCGGATCAGACTTTGATGTCTCAACCATAGAGCAGATGGCTTCGACCACTATTGGAAACCTGTCAGggGCCTGTTGAAGAAAGGAAAATCTTGAAGaaaatgctattttattttgtgtttaatttaacttttgaaattaacattttgtttgcgtaaatatgaatgtatttatttttatttaacgaACTGTATCCTTGGCAGCCctttaataaaatgtaaaagaaa

Function

symbol description
figla Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within female gonad development. Is expressed in gonad; ovary; and testis. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 6. Orthologous to human FIGLA (folliculogenesis specific bHLH transcription factor).

NR:

description
factor in the germline alpha isoform X2

GO: NA

KEGG:

id description
K09066 FIGLA; factor in the germline alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803115.1 True 1550 mRNA 0.43 6 6952031 6965559
XM_039803116.1 False 1511 mRNA 0.44 7 6951936 6965559
XM_039803117.1 False 1445 mRNA 0.42 5 6952031 6965557
XM_039803118.1 False 908 mRNA 0.43 6 6952031 6968096

Neighbor

gene id symbol gene type direction distance location
npffr1l2 LOC104924995 coding upstream 97532 6829697 ~ 6854404 (+)
tet3 LOC104925995,LOC103369109 coding upstream 155239 6752288 ~ 6796697 (+)
ap3m2 ap3m2,LOC102227009,LOC100708439 coding upstream 213627 6727779 ~ 6738309 (+)
cdca2 NA coding upstream 302958 6631591 ~ 6648978 (+)
sema4c sema4c coding upstream 324844 6498113 ~ 6627092 (+)
snrnp27 snrnp27,LOC102787093 coding downstream 29057 6997153 ~ 7007259 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding downstream 40068 7008164 ~ 7026887 (+)
cds2 LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002 coding downstream 107230 7075326 ~ 7101894 (+)
arhgap25 arhgap25 coding downstream 140717 7108813 ~ 7136851 (+)
bmp10 bmp10,LOC101468345 coding downstream 172101 7140197 ~ 7143020 (+)
G59627 NA non-coding upstream 136430 6815248 ~ 6815506 (+)
G59543 NA non-coding upstream 210647 6741041 ~ 6741289 (+)
G59544 NA non-coding upstream 211008 6740664 ~ 6740928 (+)
G59516 NA non-coding upstream 617145 6334494 ~ 6334791 (+)
G59515 NA non-coding upstream 617722 6333979 ~ 6334214 (+)
G59687 NA non-coding downstream 59202 7027298 ~ 7029309 (+)
G59694 NA non-coding downstream 113918 7082014 ~ 7106854 (+)
G59696 NA non-coding downstream 211397 7179493 ~ 7263343 (+)
G59803 NA non-coding downstream 525792 7493888 ~ 7494204 (+)
G59804 tia1,LOC104967008 non-coding downstream 530393 7498489 ~ 7504014 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 233052 6674864 ~ 6718884 (+)
G59347 NA other upstream 1454182 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 1482726 5448061 ~ 5469210 (+)
fbrsl1 LOC103357558 other upstream 1581068 5053233 ~ 5370868 (+)
LOC120560573 LOC104934257 other upstream 2333903 4571383 ~ 4618033 (+)
add2 LOC102210956,LOC102786375 other downstream 1023 6969119 ~ 6996856 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other downstream 41550 7009646 ~ 7050772 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 606629 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 631996 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 657640 7625736 ~ 7630180 (+)

Expression


Co-expression Network