apba1a (apba1)


Basic Information

Item Value
gene id apba1a
gene name apba1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3555073 ~ 3603158 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803135.1
cacacacacacacacagagatagagagagagacagggaagaTGGAGGATGGTGTGGCAGCGGCGGAGCGGACCTCCAGCCTGCTGATAGCCGGGTGGACCTGAGAACTAGGACCTCACGGAATCAAACTGCTGCTGTCATCGTACACCTGATAACATAAGGCTCCTCCCAGCAGCATTTGCCCTGATCCATAGAGGCGCCTGCTAATGACGGACTCCTAAAACCTTTCTCTGACTCAGCTCCACCAACCAGAACCAGACAGCCATGAACCCTGAGGAGACGGAGCTCGGCCAGGAGGTTATGGAGGAGAACAACGCCCCTCCTCGCCAGCGccacaacaaccacaacaaccgGCCCCGTAACCACAGCAACCAGGAAAAGCGCTACAGGCGCTTTGAGGCCCCTGCTGGAGGAAGTGCTGGCAGCAGAGCAAGGGTGCCGCAGCAGCGCAGGCCACAGGAGGAGCTGGACATGGAGCTGCAACACGGAGGTCAGTCTGCACAGCCCCAGCAGCCCCAGCCCATCCCCCGACCCGCGGTGACACGGTACCGCCGGCAGGGGGACAGCGAGGCACGCATCAGGGCCCAGCAGCAGAGGCACAGACAGAGGcagcagagagaggcagagaaagcACAACAACAGGAGAGGCAGCAGCGTGCCGAGATGACCCAGGAGGATGAACGAGAGAGGGACGACTCAGTGCTGGCCCGCTCAGCGAGCACGGAGAGCGGCTTCCACACCCATACCGACCGGGCCGAGGGGGACGATGGTCTGGTGATGATGTCTCTGGAGCCTGATGGGCAGCCAGAGGCGGAGGATGAGGCGGGGAACTACGAGGTCCAGCTACGGCCGGAGGCGGAGGGGTACACAGAGAGTGCCGAGGCTGAACAGCAACACCAACAACCCCATCCTAACTATCCTCCTCAGCCCCCGCCACTGCCACGTGAGCCCCTGCCTGATATCCAAAACCCCCAGAGACAGGATGAAGCAGAGGAGATGCTGAACACTGGCTACTCCAACTACGTCTACACCCGGCCCCTCAGCCACTCCGGAGGAACGGCCGACTTCTCGGCCAGTCAAAGCTCGGAGAGTTTAGACGCTGTTCTTGCGGACGAAGCCTATTCTGAGCCATATGACATTTACTCACTCTCCGAGCATGTTTACGAGGAAATCTGCGACGCTCCCGCTTCAGTTTCCTCCGCTGCAGACGGGGCTGAGGACACAGAGTCTCTCCAACAGAGGCGGACCGGCTTTCAGCTGTTGGAGGGCCGGGCGGGGGGTGGAGACTACCATCAGCAGGAGGCGGTGGGCTCCCGTCTTCGCCACTACGACGAACGCTCTGACGGCGAGTCAGACAGCCCTGAGAAGGAGGCGGAGTTCGCCCCGTACCCACGCGCCGACAGCTGCGACCAGGAGGAGGACATCGACAGCATCGTGGCTGAGGTCAAAGAAAGCCTGAGCTCTCAGAGTCTTCATCGTGCTTTGGAAGACACCATAGATGAAGAAAATGAGCTACAGCAGGAAGAAGAAAAGTCCCAAATGGACTCTGATGAGACCCACAGAGCTGGCGCCCCAGGGCAGCCAGCCAGAAGAGCATCTGGGAGTCCCCCAGAGGAGCTTGCAGCAGCGAGGAACAGCCAGGAGAAGAGGGACGCCATCTCCCTGGCCATCAAGGACATTAGGGAGGCCATAGAGGAGGTGAAGACCAGAACAGTGAGATCTCCATACACACCTGATGAGCCCAAGGAGCCCATCTGGGTAATGAGGCAGGACCTGAGCCCCACCGCTGAGTGTGACCTCCAGCCATCGCTGGGGGGGGACTCTCCTGGTTCAGGCTCGCCCTCTCCTCCGGGAGCCGAGTCGTCCAGCAGACTGCTGCTGCAGGATGACAGCGTGGACTCTTCTCCCTCCAGTAAAGAGTCCAGGAGAAGCCTTGCGTCTTTCCCCACGTATGTAGAAGTCCCGGGCCCCTGTGACCCCGAGGACCTGATCGATGGGATCATCTTCGCCGCCAACTACCTGGGCTCCACCCAGCTGCTGTCGGATAAGACTCCGTCCAAGAACATCCGCATGATGCAGGCACAGGAGGCCGTCAGCCGCATCAagACGGCCCAGAAATTAGCCCAGAACAAGAAGAAGgccccTGAGGGTGAGCCTCAGCCCATGACAGAGGTGGATCTCTTCATCTCCACGCAGAGAATCAAAGTGCTCAATGCTGACTCCCAGGAGACTATGATGGACCACCCTTTGCGGACCATCTCCTACATTGCTGACATTGGCAATATCGTGGTCCTGATGGCCCGGCGCAGGATGCCTCGATCCGACTCTCAGGAGAATGTGGAGGCCTCAGACCCAGGCCAAGACAGCAAGCGCCAGTACAAGATGATCTGCCACGTGTTTGAGTCTGAGGATGCCCAGTTGATTGCCCAGTCCATCGGGCAGGCCTTCAGCGTGGCTTACCAGGAATTTCTACGAGCCAATGGCATTAACCCAGAGGATCTGAGCCAGAAGGAGTACAGTGACCTGCTCAACACTCAGGACATGTACAATGATGACCTCATCCACTTCTCCAAGTCTGAGAACTGCAAAGACGTGTTCATAGAGAAAGCCAAGGGGGAGATTCTGGGCGTGGTCATTGTGGAGAGTGGGTGGGGCTCCATCCTGCCCACTGTCATCATTGCCAACATGATGCATGCTGGGCCGGCTGAGAGGTCTGGGAAACTGAACATAGGAGACCAGATCATGTCCGTTAATGGGACAAGTCTGGTGGGACTGCCCCTGTCCACCTGCCAGACCATCATTAAGGGTCTGAAGAACCAGTCTGGGATCAAGCTAAACCTCGTCAGATGTCCCCCAGTGACCACTGTACTCATCAGACGGCCAGACCTCCGCTACCAGCTGGGCTTCAGCGTCCAGAATGGCATTATCTGTAGCCTTATGCGTGGGGGCATCGCCGAACGTGGCGGAGTCAGAGTGGGTCACCGCATCATTGAGATCAACAGCCAGAGCGTGGTGGCCACGCCCCACGAAAAAATTGTCCACATCCTGTCCAGCGCTGTGGGAGAGATCCACATGAAGACGATGCCTGCAGCCATGTACCGCCTGCTGACCGCCCAGGAGCAGCCAGTTTACATTTAACAAGACAAAGCCCTGAGCTCACACACCCTTTAATCAGCtgtcccccctcctccccccccacacccacctCTGCCCAGCCCAGTGCTCATCCTGCCCCCTCCTGTTCACAGCTGGTGGACTACAGTGAGTTGTTAGTACAATTGTTCTGTTGCTTAACTAGAAACCCAAATCTGTCGTCACTAAAAAATTTGTTTTCCTGCTTTGGCTAAATGTACAATTGGTGAAAGGGTGTTTACACCTGATGTATTATGAAGCGCTTAGTAGTGCCCCACAATCCTCAACTTTTCTTCGTGGTTCACAAGTGTATCTTTAATGTTCAGTTTAGGCAACTAACACAGTTTTGGTCATTGTTAAACAAGAAGGATGAGAACTTCTCACACACTAGAAACCTTATTTTAAAGAGCGGGGACTCCGATGGTGGACCTTCACACTCTGACTGTAACTTCTGCTGTCCTGCTGTTTCACTGGCAGAACACAGCCTGTCTTGTTATATTTCCTCCACCAAATCATTCATGTGAGGCAACCATTTTTTCATGTTGTAGCTACATTTCATGAGACCAAGCTTGCACTTCAGCTCTCCTCCTGCGGCTGTAATCCACTCTAAGTACTGTGCGTTGGTGTTCTTTGCAGAGCTCTCCACAGAGGGAGTATGTGAATCTTGCTGACAAATAAGTGTGTGAACACACACTCCCTATCGTCACATTCCACACGTTTGCTGCATTATAGAAGAGTTGCCGCTGCAAACAGCAAAGCTTTCCAACTCTACTGTAGTCACTTGTTACCGTAGTTTCCATTCCATTTGTTTCCTGTCTGTATGCTCTGTACATAGCACAGACAGGAGCTCCAGTCAGCATGTAATACCCCCATTAAACTAATACTCCCCTTACACCACAGACCCAACCAGCGTGTCCAAACATAGAGCTGACTCATGGGACCCTTTTACCCCAAACCTGATGACCTACCATGTCCCTATGTTCAGGTGTTTGCACAATATGCAGGAATGGGAGTCTAAATAAACCCTGGCTGTTCTCAACTACTGTAACAA
>XM_039803136.1
ACTGTGTTGACCATAAGGTTTCATaaaaaaactggaaatgatAAAGTTGTTAATTTCAGATTCAGAGGCCTTATCTTTTCCATGCAGAGGGAATCTGGGTTACAGCTCGCAGTTGAGTCAACATCCAAAATGCCACACTCAAGGCTTCATatcggcagtccacaaaccaatggGGTGGACCTGAGAACTAGGACCTCACGGAATCAAACTGCTGCTGTCATCGTACACCTGATAACATAAGGCTCCTCCCAGCAGCATTTGCCCTGATCCATAGAGGCGCCTGCTAATGACGGACTCCTAAAACCTTTCTCTGACTCAGCTCCACCAACCAGAACCAGACAGCCATGAACCCTGAGGAGACGGAGCTCGGCCAGGAGGTTATGGAGGAGAACAACGCCCCTCCTCGCCAGCGccacaacaaccacaacaaccgGCCCCGTAACCACAGCAACCAGGAAAAGCGCTACAGGCGCTTTGAGGCCCCTGCTGGAGGAAGTGCTGGCAGCAGAGCAAGGGTGCCGCAGCAGCGCAGGCCACAGGAGGAGCTGGACATGGAGCTGCAACACGGAGGTCAGTCTGCACAGCCCCAGCAGCCCCAGCCCATCCCCCGACCCGCGGTGACACGGTACCGCCGGCAGGGGGACAGCGAGGCACGCATCAGGGCCCAGCAGCAGAGGCACAGACAGAGGcagcagagagaggcagagaaagcACAACAACAGGAGAGGCAGCAGCGTGCCGAGATGACCCAGGAGGATGAACGAGAGAGGGACGACTCAGTGCTGGCCCGCTCAGCGAGCACGGAGAGCGGCTTCCACACCCATACCGACCGGGCCGAGGGGGACGATGGTCTGGTGATGATGTCTCTGGAGCCTGATGGGCAGCCAGAGGCGGAGGATGAGGCGGGGAACTACGAGGTCCAGCTACGGCCGGAGGCGGAGGGGTACACAGAGAGTGCCGAGGCTGAACAGCAACACCAACAACCCCATCCTAACTATCCTCCTCAGCCCCCGCCACTGCCACGTGAGCCCCTGCCTGATATCCAAAACCCCCAGAGACAGGATGAAGCAGAGGAGATGCTGAACACTGGCTACTCCAACTACGTCTACACCCGGCCCCTCAGCCACTCCGGAGGAACGGCCGACTTCTCGGCCAGTCAAAGCTCGGAGAGTTTAGACGCTGTTCTTGCGGACGAAGCCTATTCTGAGCCATATGACATTTACTCACTCTCCGAGCATGTTTACGAGGAAATCTGCGACGCTCCCGCTTCAGTTTCCTCCGCTGCAGACGGGGCTGAGGACACAGAGTCTCTCCAACAGAGGCGGACCGGCTTTCAGCTGTTGGAGGGCCGGGCGGGGGGTGGAGACTACCATCAGCAGGAGGCGGTGGGCTCCCGTCTTCGCCACTACGACGAACGCTCTGACGGCGAGTCAGACAGCCCTGAGAAGGAGGCGGAGTTCGCCCCGTACCCACGCGCCGACAGCTGCGACCAGGAGGAGGACATCGACAGCATCGTGGCTGAGGTCAAAGAAAGCCTGAGCTCTCAGAGTCTTCATCGTGCTTTGGAAGACACCATAGATGAAGAAAATGAGCTACAGCAGGAAGAAGAAAAGTCCCAAATGGACTCTGATGAGACCCACAGAGCTGGCGCCCCAGGGCAGCCAGCCAGAAGAGCATCTGGGAGTCCCCCAGAGGAGCTTGCAGCAGCGAGGAACAGCCAGGAGAAGAGGGACGCCATCTCCCTGGCCATCAAGGACATTAGGGAGGCCATAGAGGAGGTGAAGACCAGAACAGTGAGATCTCCATACACACCTGATGAGCCCAAGGAGCCCATCTGGGTAATGAGGCAGGACCTGAGCCCCACCGCTGAGTGTGACCTCCAGCCATCGCTGGGGGGGGACTCTCCTGGTTCAGGCTCGCCCTCTCCTCCGGGAGCCGAGTCGTCCAGCAGACTGCTGCTGCAGGATGACAGCGTGGACTCTTCTCCCTCCAGTAAAGAGTCCAGGAGAAGCCTTGCGTCTTTCCCCACGTATGTAGAAGTCCCGGGCCCCTGTGACCCCGAGGACCTGATCGATGGGATCATCTTCGCCGCCAACTACCTGGGCTCCACCCAGCTGCTGTCGGATAAGACTCCGTCCAAGAACATCCGCATGATGCAGGCACAGGAGGCCGTCAGCCGCATCAagACGGCCCAGAAATTAGCCCAGAACAAGAAGAAGgccccTGAGGGTGAGCCTCAGCCCATGACAGAGGTGGATCTCTTCATCTCCACGCAGAGAATCAAAGTGCTCAATGCTGACTCCCAGGAGACTATGATGGACCACCCTTTGCGGACCATCTCCTACATTGCTGACATTGGCAATATCGTGGTCCTGATGGCCCGGCGCAGGATGCCTCGATCCGACTCTCAGGAGAATGTGGAGGCCTCAGACCCAGGCCAAGACAGCAAGCGCCAGTACAAGATGATCTGCCACGTGTTTGAGTCTGAGGATGCCCAGTTGATTGCCCAGTCCATCGGGCAGGCCTTCAGCGTGGCTTACCAGGAATTTCTACGAGCCAATGGCATTAACCCAGAGGATCTGAGCCAGAAGGAGTACAGTGACCTGCTCAACACTCAGGACATGTACAATGATGACCTCATCCACTTCTCCAAGTCTGAGAACTGCAAAGACGTGTTCATAGAGAAAGCCAAGGGGGAGATTCTGGGCGTGGTCATTGTGGAGAGTGGGTGGGGCTCCATCCTGCCCACTGTCATCATTGCCAACATGATGCATGCTGGGCCGGCTGAGAGGTCTGGGAAACTGAACATAGGAGACCAGATCATGTCCGTTAATGGGACAAGTCTGGTGGGACTGCCCCTGTCCACCTGCCAGACCATCATTAAGGGTCTGAAGAACCAGTCTGGGATCAAGCTAAACCTCGTCAGATGTCCCCCAGTGACCACTGTACTCATCAGACGGCCAGACCTCCGCTACCAGCTGGGCTTCAGCGTCCAGAATGGCATTATCTGTAGCCTTATGCGTGGGGGCATCGCCGAACGTGGCGGAGTCAGAGTGGGTCACCGCATCATTGAGATCAACAGCCAGAGCGTGGTGGCCACGCCCCACGAAAAAATTGTCCACATCCTGTCCAGCGCTGTGGGAGAGATCCACATGAAGACGATGCCTGCAGCCATGTACCGCCTGCTGACCGCCCAGGAGCAGCCAGTTTACATTTAACAAGACAAAGCCCTGAGCTCACACACCCTTTAATCAGCtgtcccccctcctccccccccacacccacctCTGCCCAGCCCAGTGCTCATCCTGCCCCCTCCTGTTCACAGCTGGTGGACTACAGTGAGTTGTTAGTACAATTGTTCTGTTGCTTAACTAGAAACCCAAATCTGTCGTCACTAAAAAATTTGTTTTCCTGCTTTGGCTAAATGTACAATTGGTGAAAGGGTGTTTACACCTGATGTATTATGAAGCGCTTAGTAGTGCCCCACAATCCTCAACTTTTCTTCGTGGTTCACAAGTGTATCTTTAATGTTCAGTTTAGGCAACTAACACAGTTTTGGTCATTGTTAAACAAGAAGGATGAGAACTTCTCACACACTAGAAACCTTATTTTAAAGAGCGGGGACTCCGATGGTGGACCTTCACACTCTGACTGTAACTTCTGCTGTCCTGCTGTTTCACTGGCAGAACACAGCCTGTCTTGTTATATTTCCTCCACCAAATCATTCATGTGAGGCAACCATTTTTTCATGTTGTAGCTACATTTCATGAGACCAAGCTTGCACTTCAGCTCTCCTCCTGCGGCTGTAATCCACTCTAAGTACTGTGCGTTGGTGTTCTTTGCAGAGCTCTCCACAGAGGGAGTATGTGAATCTTGCTGACAAATAAGTGTGTGAACACACACTCCCTATCGTCACATTCCACACGTTTGCTGCATTATAGAAGAGTTGCCGCTGCAAACAGCAAAGCTTTCCAACTCTACTGTAGTCACTTGTTACCGTAGTTTCCATTCCATTTGTTTCCTGTCTGTATGCTCTGTACATAGCACAGACAGGAGCTCCAGTCAGCATGTAATACCCCCATTAAACTAATACTCCCCTTACACCACAGACCCAACCAGCGTGTCCAAACATAGAGCTGACTCATGGGACCCTTTTACCCCAAACCTGATGACCTACCATGTCCCTATGTTCAGGTGTTTGCACAATATGCAGGAATGGGAGTCTAAATAAACCCTGGCTGTTCTCAACTACTGTAACAA

Function

symbol description
apba1 Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to act upstream of or within several processes, including amino acid transport; in utero embryonic development; and intracellular protein transport. Located in Golgi apparatus.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04531 APBA1, X11; amyloid beta A4 precursor protein-binding family A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803135.1 False 4182 mRNA 0.55 14 3555073 3603158
XM_039803136.1 True 4263 mRNA 0.55 14 3555073 3589853

Neighbor

gene id symbol gene type direction distance location
LOC120561346 NA coding downstream 200126 3315816 ~ 3354947 (-)
LOC120561352 gcnt4 coding downstream 239870 3311067 ~ 3315203 (-)
LOC120561362 NA coding downstream 261766 3272451 ~ 3293307 (-)
traf2a traf1,LOC106956159,LOC103356465,LOC106930528,LOC103141905,LOC108249884,LOC102784265 coding downstream 343074 3196486 ~ 3211999 (-)
b3galt8 NA coding downstream 507271 3045676 ~ 3047802 (-)
ptar1 ptar1 coding upstream 3237 3606395 ~ 3621480 (-)
pias2 pias2 coding upstream 195874 3799032 ~ 3816820 (-)
ydjc ydjc coding upstream 227188 3830346 ~ 3844040 (-)
ak6 ak6 coding upstream 241484 3844642 ~ 3848510 (-)
isl1a isl1,LOC103469637,LOC107374027,LOC107661270,LOC103141950,LOC102231175 coding upstream 499859 4103017 ~ 4109223 (-)
G58943 NA non-coding downstream 30488 3524383 ~ 3524585 (-)
G58942 NA non-coding downstream 31469 3522846 ~ 3523604 (-)
G58940 NA non-coding downstream 32317 3521187 ~ 3522756 (-)
G58939 NA non-coding downstream 40932 3513631 ~ 3514141 (-)
G58938 tjp2,LOC104956084 non-coding downstream 46671 3507758 ~ 3508402 (-)
G58966 NA non-coding upstream 2904 3606062 ~ 3606309 (-)
G58996 NA non-coding upstream 132396 3735554 ~ 3735874 (-)
G58998 NA non-coding upstream 134384 3737542 ~ 3737785 (-)
G59000 LOC104943502 non-coding upstream 163033 3766191 ~ 3766435 (-)
LOC120561443 NA non-coding upstream 187262 3790420 ~ 3792518 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 138219 3415627 ~ 3416854 (-)
G58919 NA other downstream 157577 3397169 ~ 3397496 (-)
si:ch211-102c2.4 NA other downstream 315010 3232606 ~ 3240063 (-)
tnc tnc,LOC104930867,LOC103356464 other downstream 420524 3049669 ~ 3134549 (-)
LOC120561349 donson,LOC102310661 other downstream 708466 2834188 ~ 2846607 (-)
G58994 NA other upstream 85471 3688629 ~ 3689338 (-)
golph3a golph3,LOC103397487,LOC108249570 other upstream 606590 4209748 ~ 4224568 (-)
sub1b sub1 other upstream 820991 4424149 ~ 4430090 (-)
LOC120560375 NA other upstream 829686 4432844 ~ 4436316 (-)
LOC120561493 NA other upstream 1863065 5466223 ~ 5466437 (-)

Expression


Co-expression Network