Item | Value |
---|---|
gene id | ap1b1 |
gene name | ap1b1,LOC102786025 |
gene type | coding |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053117.1 |
NCBI id | CM020914.1 |
chromosome length | 43979800 |
location | 19399883 ~ 19427717 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
ap1b1 | Predicted to enable clathrin binding activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception; regulation of sodium ion transmembrane transporter activity; and sensory organ development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Is expressed in brain; eye; female organism; inner ear; and otic vesicle. Orthologous to human AP1B1 (adaptor related protein complex 1 subunit beta 1). |
description |
---|
AP-1 complex subunit beta-1 isoform X1 |
id | name | namespace |
---|---|---|
GO:0006886 | intracellular protein transport | biological_process |
GO:0006897 | endocytosis | biological_process |
GO:0035315 | hair cell differentiation | biological_process |
GO:0048839 | inner ear development | biological_process |
GO:0050974 | detection of mechanical stimulus involved in sensory perception | biological_process |
GO:0016192 | vesicle-mediated transport | biological_process |
GO:0048884 | neuromast development | biological_process |
GO:2000649 | regulation of sodium ion transmembrane transporter activity | biological_process |
GO:0030131 | clathrin adaptor complex | cellular_component |
GO:0008565 | obsolete protein transporter activity | molecular_function |
id | description |
---|---|
K12392 | AP1B1; AP-1 complex subunit beta-1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_039803142.1 | True | 4586 | mRNA | 0.49 | 24 | 19400169 | 19427717 |
XM_039803143.1 | False | 4580 | mRNA | 0.49 | 24 | 19400169 | 19427717 |
XM_039803144.1 | False | 4566 | mRNA | 0.49 | 24 | 19399883 | 19427717 |
XM_039803145.1 | False | 4466 | mRNA | 0.49 | 23 | 19400169 | 19427717 |
XM_039803146.1 | False | 4445 | mRNA | 0.49 | 22 | 19400169 | 19427717 |
XM_039803148.1 | False | 4415 | mRNA | 0.48 | 21 | 19400169 | 19427717 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
gas2l1 | gas2l1 | coding | upstream | 630 | 19376194 ~ 19399253 (+) |
ewsr1b | ewsr1,LOC102785556 | coding | upstream | 27274 | 19364006 ~ 19372609 (+) |
emid1 | emid1 | coding | upstream | 42737 | 19298555 ~ 19357146 (+) |
dnah10 | dnah10 | coding | upstream | 103209 | 19269536 ~ 19296674 (+) |
atp6v0a2b | atp6v0a2 | coding | upstream | 130855 | 19256786 ~ 19269028 (+) |
osbp2b | LOC104966002,LOC107394196,LOC103353525 | coding | downstream | 26531 | 19454248 ~ 19504544 (+) |
si:ch211-102c2.8 | NA | coding | downstream | 90459 | 19518176 ~ 19532323 (+) |
tcn2 | NA | coding | downstream | 108585 | 19536302 ~ 19540034 (+) |
dguok | LOC104941578,LOC108234509,LOC102204634,LOC103375338 | coding | downstream | 112533 | 19540250 ~ 19544265 (+) |
spaw | NA | coding | downstream | 116612 | 19544329 ~ 19547286 (+) |
LOC120560789 | NA | non-coding | upstream | 246299 | 19151533 ~ 19153584 (+) |
G62836 | NA | non-coding | upstream | 313021 | 19084934 ~ 19086862 (+) |
G62796 | NA | non-coding | upstream | 417260 | 18966083 ~ 18982623 (+) |
G62755 | NA | non-coding | upstream | 535076 | 18864575 ~ 18864807 (+) |
G62741 | NA | non-coding | upstream | 626775 | 18772755 ~ 18773108 (+) |
G63005 | LOC104920315,LOC103374896,LOC100704901 | non-coding | downstream | 121693 | 19549410 ~ 19554906 (+) |
G63007 | NA | non-coding | downstream | 127666 | 19555383 ~ 19562350 (+) |
G63015 | LOC107394186,LOC104941583 | non-coding | downstream | 147844 | 19575561 ~ 19633642 (+) |
G63016 | NA | non-coding | downstream | 154255 | 19581972 ~ 19584473 (+) |
G63029 | NA | non-coding | downstream | 228515 | 19656232 ~ 19656496 (+) |
tmem119a | LOC103353570,LOC104946818 | other | upstream | 318229 | 19076561 ~ 19081654 (+) |
mvk | mvk,LOC102798305 | other | upstream | 657484 | 18737518 ~ 18742399 (+) |
acacb | acacb | other | upstream | 714420 | 18661157 ~ 18685463 (+) |
tpcn1 | tpcn1 | other | upstream | 925152 | 18441347 ~ 18474731 (+) |
tbx5b | tbx5,LOC103470367 | other | upstream | 980293 | 18407348 ~ 18419590 (+) |
rasl10a | rasl10a | other | downstream | 2684 | 19430401 ~ 19448950 (+) |
c6h2orf68 | c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 | other | downstream | 331879 | 19759596 ~ 19763524 (+) |
vps13a | vps13a | other | downstream | 973230 | 20400947 ~ 20442093 (+) |
wdr31 | wdr31,LOC102796061 | other | downstream | 1045934 | 20473651 ~ 20490586 (+) |
G63480 | rbm19 | other | downstream | 1248700 | 20676417 ~ 20677916 (+) |