cdk7 (cdk7)


Basic Information

Item Value
gene id cdk7
gene name cdk7
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18059560 ~ 18065397 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803154.1
AACCTCTTCTAACCCGGAAAAAGAACGCACGGACCTTTAACAAGACAGGAAGTGTCTCCTGATGAAACTGACAGTTAGCTAGGTATCATGGCGCTTGATGTAAAATCCAGAACTAAACGATACGAGAAATTGGACTTCCTCGGAGAGGGTCAGTTCGCCACAGTGTACAAAGCCAGGGACAAAACGAATGATACCATAGTTGCCATTAAAAAGATTAAGGTTGGCCACAGAACTGAGGCTAAAGATGGTATTAATAGGACTGCTCTTCGAGAGATCAAACTGCTGCAAGAACTGCATCATCCAAATATCATTGGGCTGCTGGATGCCTTTGGACACAAATCCAACATCAGCCTGGTGTTTGATTTCATGGAAACAGATCTGGAGgtgATCATCAAAGACACCAGCCTAGTCCTTACTCCGGCCAACATCAAAGCCTACATCCTCATGACTCTACAGGGATTAGAGTATATGCACAAACACTGGGTCCTACACAGGGATCTGAAGCCCAATAATCTGCTGTTAGATGGCAACGGAGTATTGAAGTTGGCTGATTTTGGTTTGGCCAAAGCATTTGGCAGCCCCAACAGAGTCTACACACATCAAGTTGTTACCAGGTGGTACCGCTCCCCTGAGCTCCTGTTTGGTGCCAGGATGTACGGTGTGGGTGTTGACATGTGGGCAGTGGGATGCATCTTGGCAGAGTTACTCCTTCGGGCGCCTTCCAGTTTCTCCAGTGGTTCTTCCCGTTTGTTTCTTCAAGGACCACAACAACACAAGTAA

Function

symbol description
cdk7 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within phosphorylation. Predicted to be part of transcription factor TFIIK complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human CDK7 (cyclin dependent kinase 7).

NR:

description
PREDICTED: cyclin-dependent kinase 7

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02202 CDK7; cyclin-dependent kinase 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803154.1 True 780 mRNA 0.47 9 18059560 18065397

Neighbor

gene id symbol gene type direction distance location
serinc5 serinc5,LOC102781024 coding downstream 9103 18029439 ~ 18050457 (-)
mtx3 mtx3 coding downstream 42152 18012302 ~ 18017408 (-)
homer1b homer1,LOC103357082,LOC107393910,LOC100694084,LOC108234609,LOC101486274,LOC104943385,LOC103470410,LOC102304452,LOC103397200,LOC106921283,LOC102231851 coding downstream 71225 17967578 ~ 17988335 (-)
trnaq-cug_5 NA coding downstream 99676 17959813 ~ 17959884 (-)
cenph NA coding downstream 115010 17940602 ~ 17944550 (-)
LOC120560293 lnpep coding upstream 81723 18147120 ~ 18162327 (-)
erap2 erap2,LOC104943769,LOC100692736,LOC102782494 coding upstream 97709 18163106 ~ 18170758 (-)
rgmb rgmb,LOC104943770 coding upstream 108046 18173443 ~ 18182905 (-)
thoc5 thoc5 coding upstream 247978 18313375 ~ 18321149 (-)
tfip11 tfip11,LOC102785266 coding upstream 256157 18321554 ~ 18326918 (-)
G62399 NA non-coding downstream 3417 18055251 ~ 18056143 (-)
G62339 NA non-coding downstream 126092 17931742 ~ 17933468 (-)
G62333 kif2a non-coding downstream 132605 17914926 ~ 17926955 (-)
LOC120560086 NA non-coding downstream 159733 17896791 ~ 17899827 (-)
G62318 NA non-coding downstream 217108 17841719 ~ 17842452 (-)
G62452 riok2 non-coding upstream 169208 18234605 ~ 18235686 (-)
G62493 NA non-coding upstream 238760 18304157 ~ 18304356 (-)
G62567 NA non-coding upstream 264206 18329603 ~ 18329892 (-)
G62568 NA non-coding upstream 265987 18331384 ~ 18332396 (-)
G62571 NA non-coding upstream 289845 18355242 ~ 18357753 (-)
pip5k1bb pip5k1b,LOC104956915 other downstream 163663 17853406 ~ 17895897 (-)
LOC120561236 LOC102290490,LOC106517513 other downstream 454440 17598088 ~ 17605120 (-)
LOC120560614 NA other downstream 491546 17534483 ~ 17568014 (-)
G62209 hapln1,LOC103373858,LOC106939955 other downstream 578746 17478306 ~ 17480814 (-)
G62194 NA other downstream 935083 17123996 ~ 17124477 (-)
LOC120560503 vcp,LOC102783844,LOC103357444,LOC107393925,LOC107552546 other upstream 221892 18287289 ~ 18296704 (-)
fancg fancg other upstream 232196 18297593 ~ 18303862 (-)
G62580 tacc1,LOC101470878,LOC102206806 other upstream 312205 18377602 ~ 18380502 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other upstream 317608 18383005 ~ 18386269 (-)
iqcd NA other upstream 372279 18437676 ~ 18443018 (-)

Expression


Co-expression Network