LOC120560539


Basic Information

Item Value
gene id LOC120560539
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20312561 ~ 20327903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803158.1
ATGGAGGTGTACAAACGTCGTACTACACTGTTGAAAAGCGTCAGAAGGATACTTTCCCTGCTCGGTCTACCAAAAATAGGCTGGGATCCTACCTACAGGTTCAGCTGGTTGGAGTATACAGATGCTGATGACCTCCCAGAGAAAGTGTGCAACTGTTCAGCAATCCTGCTGGGAGAGAGTGAGGCAGTGGAACAGGCCAAAATACTGACCATCACTAAAGACTTCCGCAAGAGTGTTCAGATTCCTGATGAGTACTATATCAATGCAACCCAAGACTGCAGGAAATTCAAGTTAAGTAGGAAATACTTAACATTCCCTTTAAGCCAGGAAGAAGAGGAATTCCCTCTGGCTTTCTCCATGGTTGTGCATCATAAGGTGCAGACATTTGAGCGACTGCTGCGAGCCATCTATGCACCTCAAAATATCTATTGTGTCCATGTGGACAATAAATCAGAGGCCTCTGTCTTCCCTGCCATCAGTGCCATTACCTCCTGTTTCCCAAATGTCTTCTTGGTCAGCAAGGCTGTAAATGTGGTCTATGCTGCCTGGCCACGAGTCCAGGCAGATCTTAACTGTATGGCTGATCTCTATAACGCcaaaacaaaatggaaatacttcATCAACCTTTGTGGCCAGGATTTCCCTTTGAAAACCAACTTGGAGATTGTGAGGGCGTTGCATTCATTGAAGGGCAGTAACAGCTTGGAGTCAGAAAAACTGCCTGGAGAAAAGCAGTGGAGGGTGTCAAATGTTTACCAGATTGTTGATGGGAAAATCCAGgagaaaggaaagacaaaGAAGCCACCTCCCTTTAACCTGCCCATTATGTCAGGAAATGCTTACATTGTGGTCAACCGAGGCTATATCCGCAGCGTGTTGGAGGACAAGCGAGTACTGGCACTGATCGAGTGGGCCAAAGACACCTATAGTCCGGATGAGTTTATCTGGGCAACCATTCAACGCATCCCTGGCGTCCCTGGCTCAACGATGCCCAACCGCAAATACGACATGACCGACATCAATGCGATTGCACGGCTAGTGAAGTGGCAGTCGCATGAGGGGCCACTGGGTTCACTGGAGGCGGTCTACCCAGTATGTCAAGGCAACCATGTCAGGTCAATATGTGTGTATGGTGCTGGAGACCTGCAGTGGTTGCTTAAACAGCATCACCTCTTTGCCAATAAGTTTGACACAGAAACAGATCCCATTGCGGTCTACTGCTTGGAGAAGTATCTGAGACAAAAGACACTACTTGCTACTAATCCTGAGAGATATAGGAGAATTGATCACAATCTATTTAATTATCTTTTGCAACAGATCATTTAAATAAAACCATTTTCAAGCTATATTAAAACTTATTTATATTTGATATACGTTTTCTACAGtgataaaaaactaaataattgaAATTATACAGCAGATTGTCATATCACTGGTGATCCGTCTCCATACTGCAGCCCCTCGGCCTCGAGCCCCTTTCACTGTACACTTTGAAAGAGGTTTTTAAAAGTTTTGGTCCCACTGTTTTAAATGACTCTCTGTCTATTGGCTATGTTCCCATCCTGCCTCAAGCATGCAGTAGTGCACCCACTGTTTAAGAAACCTAGCCTTGACCCTctggattacatttttttaagagCCATTTCAAAATTACCATTTTTAAGACTTTAGAGATTGCTGTTTACTTAGAGTTAATTTCTTTTGCGAATAATTATGATATTCTGACAAATTGCTATCAGTTTTCTGTTCACGTCACAGCACCGATACGGCTCTCATCAAAGTGACACACAATCTTAATCTACTCACAGCTGATGCTGGTGATTGTTTGATTTTAATTCTTGACTCTGCATTTGACACAGTTTTCTCCGTCGACCGGATCTCCAGAAGgtcattcatgcttttattttatggGTTAGATTATATTAATGCACTGTATTTGTATTCAGGGTAAAGCCAAAAAACATCTCACGCCTTCAGCTGGTACAAAACGCAGCTGCTTACTAGAAGTAAGATTATATCAGACCTagcctctcttcactggttaccagtacGTTTTAGAATTGATTTTACTGACTAATTTTAAAGCACTTCATGGTTCAGCTCCcagttacattgttgatttGCTGCTCCTCCAGGGTTTCtgtggggtcttaaaaagtctaaaatttgtAAATCCAAATTTGACGCCTTAAAAAGACTTAAATTCGCTGAAGTATtatgttctaggtcttaaattatttcaaacaggtcttaattttcctacgtctATGCAACACTACCTcctattctctttttttaattccatggtgttgtagttctttctttcgctagtccaaatataatttcgactacaaatgagaccaacatgcaacttatattacagccaatcagctttcgtgttATTGGTGCGAGTCTCTTACGGATTataccacagacataaaactgattattttcttcaggtatggggaagtgcaagtttagcgtTACTTGAAAAAACTCAATTTAGGGCtcagttgatgttgtgataaaggtcttcaattttattcataaaggtcttaaagagtctaaaatttgacttgttgaaccAGAGCGCAGCCTCAGGTCCTCAGGCAGGGCTCTGCTGGCTGTTCTGAAGTCCCGTCTCAAAACTAAAGGTGACCAGCATTGGCAGTCAGGGCTCCTCAACTCTGGAACTCCCTGCCTGAAGATCTGACAGTTGGAGAATCAGTGACCTTTAACCTTTAAATCActtctaaaa

Function

GO: NA

KEGG:

id description
K00727 GCNT1; beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803158.1 True 2758 mRNA 0.42 6 20312561 20327903

Neighbor

gene id symbol gene type direction distance location
pcsk5b pcsk5 coding upstream 12166 20226320 ~ 20300395 (+)
LOC120561477 NA coding upstream 91931 20191919 ~ 20220630 (+)
LOC120561473 NA coding upstream 121095 20181184 ~ 20191466 (+)
psmd9 psmd9 coding upstream 140469 20168720 ~ 20172092 (+)
LOC120561472 LOC104952314,LOC103366651 coding upstream 144402 20161997 ~ 20168159 (+)
foxb2 foxb2 coding downstream 25339 20353242 ~ 20381491 (+)
LOC120560540 NA coding downstream 66940 20394843 ~ 20396117 (+)
LOC120560324 NA coding downstream 69680 20397583 ~ 20400992 (+)
stpg2 NA coding downstream 171227 20499130 ~ 20551819 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding downstream 522083 20849986 ~ 21049849 (+)
G63204 NA non-coding upstream 285395 20026910 ~ 20027166 (+)
G63203 NA non-coding upstream 285806 20025755 ~ 20026755 (+)
G63202 NA non-coding upstream 286813 20024913 ~ 20025748 (+)
G63192 NA non-coding upstream 294149 20018117 ~ 20018412 (+)
G63190 NA non-coding upstream 295900 20016232 ~ 20016661 (+)
G63385 NA non-coding downstream 64504 20392407 ~ 20392631 (+)
G63377 NA non-coding downstream 114251 20442154 ~ 20442952 (+)
LOC120560275 NA non-coding downstream 230437 20558340 ~ 20564445 (+)
G63451 NA non-coding downstream 237765 20565668 ~ 20566142 (+)
G63457 NA non-coding downstream 307686 20635589 ~ 20637358 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 549037 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 863611 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 1230907 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1570162 18737518 ~ 18742399 (+)
acacb acacb other upstream 1627098 18661157 ~ 18685463 (+)
vps13a vps13a other downstream 73044 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 145748 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 348514 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1260973 21588876 ~ 21599289 (+)
G63905 NA other downstream 2601996 22929899 ~ 22930205 (+)

Expression


Co-expression Network