serinc5 (serinc5,LOC102781024)


Basic Information

Item Value
gene id serinc5
gene name serinc5,LOC102781024
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18029439 ~ 18050457 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803165.1
ACAGCGGCGGCAGCAGCCAGGCACGCAGGGTGGAAGGACTGAGCAGTTTGAGGAGGACAGGCGCGTTGTTCCCcttgtggtggtggtgatttcatgtggaggaggaagaagaagaaagcgaTTGAGAAAGCAGCGAGCTCGTCTTATTCTTAAACGGATTTTATGTATTGGCTCCTCGCAAAATGTGTACTCCGTGTTGTGTCTCGCAGCTGGCCTGCTGCTGCGGCTCAGCGGCCTGCTCGTGCTGCTGTAACTGCTGCCCCAAGATCAAACAGTCCACAGGGACCCGCATCATGTACGCCTTCTACTTCCTGCTGGTCACCGTCGTCTGTTGCATCATGATGTCCCCcactgtggaggaggagttGAGAGGCCGTATCCCCTTCTACAGTGAGTTGTGTGAGAGGATGAATGCAGGGGAGAACTGCAAAACTCTGGTTGGCTACACTGCCGTCTACAAGGTGTGCTTCGGCATGGCCTGCTTCTTCTTATTTTTCGCTTTCTTCACCATACGAGTCAACAACAGCACAGGCTGCAGGGCGGCTGTGCATAACGGGTTCTGGTTGCTGAAGTTTATTGTGCTGGTGGCGTGCTGCGCTGGTGCCTTCTTCATCCCGGGTCAGGAAACCTTTCTGGAAGTGTGGCGCTACATAGGAGCAGCTGGCGGGTTCTTTTTCCTGCTGATCCAGCTCATGATGTTGGTGGAGTTTGCACACAGATGGAACACAAACTGGAATTCAGGAGTGAAGTATAATCGCCTGTGGTACGCCGCTTTGGCCTTTGTAACTCTGATGCTGTTCAGTGGTGCGGTAGCAGCCTTGGTGTTCATGGGTGTGTTCTACACCGACCCCGAGGCCTGTTTACTTAACAAGATCTTCCTGGGCATCAACGGCAGCCTGTGCTTCATCGTCTCCCTGTTGGCCATCTCCCCATGCATACAGAAATTGCAGCCCACATCAGGTCTGCTGCAGCCAGGAGTCATCAGTGTGTACGTCATGTACCTCACCTTCTCAGCCTTCTCCAGCAAACCAAAAGAGATGGTGGAAAGAAATGGTGTGAACACAACCGTGTGCGTGTTTCCCTTAAACGCTGGAACGGAGAGCGACAAGAAGATTGTCACCATTTTTGGGACGGTTATCCTGTTTGGCTGCATTCTTTACTCttgcttgACGTCCACCACCAGGCGAAGCTCTGCAGCGCTCAGAGTGTGTAGGAACAGTGAGCCAGAGGCTGAGAGAGCTCGCTGCTGTTTCTGTTTTGGAGATGACACAGaTGATTATGATGAGGAGAATACTGGTGGAGGCCAGAACGTGGTGTATGATGAAAGAGAGGCAACCATCTACAGCTACTCCTACTTCCATTCTGTCTTCTTCCTGGGATCCCTCTATGTCATGATGACCGTCACCAACTGGTTCCATTATGATAACCATAAGATTGAGAAGCTGTTGGACGGGAGCTGGTCAGTGTTCTGGATCAAGATGGTTTCCTGCTGGGTCTGTCTGTTCCTCTACATGTGGACCCTTTTCGCTCCCATGGTCTGCCCGAGGCGCTTTGAGGCCTAGGACACCCGCCACTACGCTAGAGTCAGGCTACTCTGATTCTTGGGATGTGGCCAGGCAGAGGCTCGCACGCTGAGCCAAGGgaccagcccccccccccttcccacTTTACCTTGAAACACAACCCTACACTACCCTCAGTGTTTGGAATGGAGGAATATCTGTTGCCTTTTGTTTTGTATATGCTAGTGTTTATTTTACTTCGTTTTACAATGTTAAGCTGTTAATACGTTGATGGTAATTTTGTTATCTTTTACTACCACTTACTCATGGAGTTTTGTATTACTTACAGATTTGAGAGTACATAAAGAATCATGGGAGTTGAGTTACATTGTGAAACATGATAAGAGTTTGTTCCCTATAGATTCCTTCATAATTTCAGATTTGAAAGCATATTTTGTATTTCCTACTTGGATTCTCACTTTTAATCTCAGCCAGGCATTTCAGTTCTGTACAGTTGGACCATAAAGTTGTAGCAAAGTTTTGGGACAAATGTATTTCAGGTTAGAGATATTACAAgataaattgtatttatttaagtatGTCTTAAGTAATCAGAAATCATTTATGAAGAACTGTGGTGTAAATTGAAGTAGATTTGTCCCCGACTCTGTTTAAAAACTCATCTCTCAGGCTCACATGTAAGCTGTATATGTTTGTGCTTTGTTAAATCGCTCCCTTTTTGTAGAAGTTTTCTATGCAAAGGAACAAGTCTTTTCAATATTATACCCAGTGTTGTGAAGTTTCCACTTAGATTTCAAGGATGTTTCAGATTTTATTATTGTTAGTGCTCCATTTGAGCCAGATTTTTTCTTAGGAAAATCCCTGTCATCTGTACAACATTTCCAGTCATCGTTGTTGTTGTACAGGGCAGTGCTCCTCAAATCAACCTGCCTTATGTAAGAGTGACGTTAGTGGAGTGCCGCCTCTCTGGAAGAGCTGCAGTGAAACAGATGAGAAACGTTTGCCAAAGGTAGATGTCAGAAAACAACAAACTACAGTATCACAATTGTTTGGTCAGTTACAGAGAATAATATAACTGAGAACATTATGtatttgcatgcacacacagacacttgaaTCAGCTGTTTTCTGTACAGTTATAAAGGCTTTTGTTACGTGTGTCAGCTCATAATGGTGGTCAGAATAAGTAGCATAAGTGCTTTTATTAGAGTTATTCAACACTGGATGTTGGGTTTACTGCCAAAAGGAAATTCACACAAAGACCTTCACTTGTTTGTTACCTGTGTAACAGATTTCTGTTGTATTgtattaaaatacaatttattGCGCATTGTTAACTGCAAGTCATTTGTTTCTCATTCATCAATAAATCattgtcctttttttgttttacaataacttaaaaTGTACGTACATTTTGGCTTGAATTCTGTGGAAAGCAAATTGTGACTTATTTTTTTTGGAAACATTTCTGCATTTAGCTATTGGTATGAATGTAGAAAATAAATGGTGCTCTgcagctttgatttaaaaaaataaataaaaatatcctAAATCAGATAGCAGGACCCACTGTGAAGGCTGTGTACTACCATAACATACAGGGACACTTATTTGGACCAAGTAGTGTGTTTGAAATATAAAGATGTGGGTGCCATGCAGTTCATTGTTCACACTATTTCAATAAAACTCCATTGAATGCCA

Function

symbol description
serinc5 Predicted to be involved in defense response to virus; detection of virus; and innate immune response. Predicted to act upstream of or within several processes, including myelination; phospholipid metabolic process; and sphingolipid metabolic process. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including central nervous system; hindbrain neural plate; midbrain hindbrain boundary neural keel; optic primordium; and optic vesicle. Orthologous to human SERINC5 (serine incorporator 5).

NR:

description
PREDICTED: serine incorporator 5-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803165.1 True 3227 mRNA 0.44 12 18029439 18050457

Neighbor

gene id symbol gene type direction distance location
mtx3 mtx3 coding downstream 12031 18012302 ~ 18017408 (-)
homer1b homer1,LOC103357082,LOC107393910,LOC100694084,LOC108234609,LOC101486274,LOC104943385,LOC103470410,LOC102304452,LOC103397200,LOC106921283,LOC102231851 coding downstream 41104 17967578 ~ 17988335 (-)
trnaq-cug_5 NA coding downstream 69555 17959813 ~ 17959884 (-)
cenph NA coding downstream 84889 17940602 ~ 17944550 (-)
dimt1l dimt1 coding downstream 88899 17935376 ~ 17940540 (-)
cdk7 cdk7 coding upstream 9103 18059560 ~ 18065397 (-)
LOC120560293 lnpep coding upstream 96663 18147120 ~ 18162327 (-)
erap2 erap2,LOC104943769,LOC100692736,LOC102782494 coding upstream 112649 18163106 ~ 18170758 (-)
rgmb rgmb,LOC104943770 coding upstream 122986 18173443 ~ 18182905 (-)
thoc5 thoc5 coding upstream 262918 18313375 ~ 18321149 (-)
G62339 NA non-coding downstream 95971 17931742 ~ 17933468 (-)
G62333 kif2a non-coding downstream 102484 17914926 ~ 17926955 (-)
LOC120560086 NA non-coding downstream 129612 17896791 ~ 17899827 (-)
G62318 NA non-coding downstream 186987 17841719 ~ 17842452 (-)
G62231 NA non-coding downstream 452887 17576219 ~ 17576552 (-)
G62399 NA non-coding upstream 4794 18055251 ~ 18056143 (-)
G62452 riok2 non-coding upstream 184148 18234605 ~ 18235686 (-)
G62493 NA non-coding upstream 253700 18304157 ~ 18304356 (-)
G62567 NA non-coding upstream 279146 18329603 ~ 18329892 (-)
G62568 NA non-coding upstream 280927 18331384 ~ 18332396 (-)
pip5k1bb pip5k1b,LOC104956915 other downstream 133542 17853406 ~ 17895897 (-)
LOC120561236 LOC102290490,LOC106517513 other downstream 424319 17598088 ~ 17605120 (-)
LOC120560614 NA other downstream 461425 17534483 ~ 17568014 (-)
G62209 hapln1,LOC103373858,LOC106939955 other downstream 548625 17478306 ~ 17480814 (-)
G62194 NA other downstream 904962 17123996 ~ 17124477 (-)
LOC120560503 vcp,LOC102783844,LOC103357444,LOC107393925,LOC107552546 other upstream 236832 18287289 ~ 18296704 (-)
fancg fancg other upstream 247136 18297593 ~ 18303862 (-)
G62580 tacc1,LOC101470878,LOC102206806 other upstream 327145 18377602 ~ 18380502 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other upstream 332548 18383005 ~ 18386269 (-)
iqcd NA other upstream 387219 18437676 ~ 18443018 (-)

Expression


Co-expression Network