rchy1 (rchy1)


Basic Information

Item Value
gene id rchy1
gene name rchy1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7512039 ~ 7519772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803194.1
CGTCATCGCACTAGAAGAAGAGCCAGTTTTGGAGCAAACCTGGAGCAAACATGGCTTCCCCTGCCGGTTGTGAGCATTATGTGCGTAGCTGCTTATTGAAAGCACCCTGCTGTGGTAAACTGTATGTGTGTCGGCTGTGCCACGATGCGGAGGAGAACCACCAGATGGATCGATTCAAAGTCCGAGAGGTGCAGTGCTCCGAGTGTCAAACAGTGCAGCAGGCGAAGCAGACTTGCCAGCAGTGTCATGTGCAGTTTGGGGAGTATTACTGTGACATTTGCCACTTGTTTGACAAGGATAAGAAGCAGTACCACTGTCTGCCCTGTGGAATATGCAGGATTGGGCCCAGGGGGAATTATTTCCATTGTGAAAAGTGCAATCTGTGTTTAGCCCAGGATCTGCGGGGAAACCACAAGTGTGTTGAAAATGTTTCGAGGCAGAACTGCCCAGTGTGTATGGAGGATATTCACACGTCCAGAATTGGAGCTCACGTTCTTCCATGCGGCCATCTTTTACACAAGACCTGCTTCGATGACATGGTCAGAACAGGAGCGTATCGCTGCCCCCTGTGTATGCACTCTGCCTGGAACATGGAGGACCACTGGGATCAAATCGACAAAGACATTGCCCAGTCACCGATGCCCACTGAATACCAGGGTGCTACTGTCAAAATTATATGTAACGACTGCCAAGCCCATTGCACAGTGCCTTTCCACGTGCTGGGGATGAAGTGCAGCGGCTGTGGTTCGTACAACACAGCACAGGACGGGGGACTGATCCAGCAGCCTGAGCAACAGCAGCCTGAGCCACAGCAGCCAGAGCAGGACGCTGAGAACGaggcagaaacagacacagagccagAGCAGCAAGATCCGCCTCAGTCACCCACGCCACATTAAGATTGCAGCCAACCACACTGGGGGACATTTGTGCATATAGACATTTGGCTGGTGCACTTACTCGTACTAACTTACATTGAGTGTAACGGTAGACTGAGCCAATATTCCTAGATTGTACAAAATACCCCAAAAATCCATCTATTTTCTGTACCTGCTTATCCTCTTCAGGGCCAGGCAACCTATCCCAGCATACATTGGGTGAGATGAAGGGTTTCAGGCTTTCACAGGACTAACCTAAcagcttgatttatggttctgcggaggctccacgcagagctttcgccgtagcctacgtaagtggcccgatgttatatatatatatatatatacgcgtTGGTGTGTGGGGGgcttatctgtgttttttgtgtaggtgccttgaaggcagcggtcgcagcgctgcctggaaggagcagttgggagTAAAAGACACCATCGAgctgtgtggggagtgggtgatagagagagagtggcGGCGATTAGCTTCCCTGTGCTTTCCGACCAAGGTGGGACACGCCGCGACACGTAGTTAACATTTTtggagaggtgcacgtcaggctacggtgtAGGGTCCGCCGTAGGtccgtgtctccacgtacctacgtacgtagcaacggcgtagattttacgcagaagtaTACATCAAGCTTAACACACATTCAAACCTAAaggcgatttaaaaaaaattattaaaataaaaaaactttccCTCTGAGGGCTCATCAAGGATTAAA

Function

symbol description
rchy1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Is expressed in several structures, including axial chorda mesoderm; cleithrum; lens; notochord; and solid lens vesicle. Orthologous to human RCHY1 (ring finger and CHY zinc finger domain containing 1).

NR:

description
PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803194.1 True 1630 mRNA 0.50 9 7512039 7519772

Neighbor

gene id symbol gene type direction distance location
bmp10 bmp10,LOC101468345 coding upstream 369019 7140197 ~ 7143020 (+)
arhgap25 arhgap25 coding upstream 375188 7108813 ~ 7136851 (+)
cds2 LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002 coding upstream 410145 7075326 ~ 7101894 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding upstream 485152 7008164 ~ 7026887 (+)
snrnp27 snrnp27,LOC102787093 coding upstream 504780 6997153 ~ 7007259 (+)
LOC120560565 LOC103361063,LOC101470473,LOC101159109,LOC100710325,LOC108235010,LOC107393511 coding downstream 30842 7550614 ~ 7572968 (+)
si:ch211-12e13.1 NA coding downstream 56463 7576235 ~ 7597214 (+)
LOC120560421 p2rx4,LOC102791813 coding downstream 112920 7632692 ~ 7639409 (+)
LOC120560946 p2rx4,LOC102791813 coding downstream 130001 7649773 ~ 7657652 (+)
gucd1 gucd1 coding downstream 138400 7658172 ~ 7663129 (+)
G59804 tia1,LOC104967008 non-coding upstream 8025 7498489 ~ 7504014 (+)
G59803 NA non-coding upstream 17835 7493888 ~ 7494204 (+)
G59696 NA non-coding upstream 248696 7179493 ~ 7263343 (+)
G59694 NA non-coding upstream 405185 7082014 ~ 7106854 (+)
G59687 NA non-coding upstream 482730 7027298 ~ 7029309 (+)
G59833 NA non-coding downstream 68023 7587795 ~ 7588630 (+)
G59826 NA non-coding downstream 110734 7630506 ~ 7631241 (+)
G59837 NA non-coding downstream 115823 7635595 ~ 7636054 (+)
G59839 NA non-coding downstream 126933 7646705 ~ 7647149 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding downstream 401005 7920777 ~ 7924556 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other upstream 461267 7009646 ~ 7050772 (+)
add2 LOC102210956,LOC102786375 other upstream 515183 6969119 ~ 6996856 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 793155 6674864 ~ 6718884 (+)
G59347 NA other upstream 2014285 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 2042829 5448061 ~ 5469210 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 54953 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 80320 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 105964 7625736 ~ 7630180 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other downstream 327899 7847671 ~ 7878371 (+)
cux2b cux2,LOC102795992 other downstream 427480 7947252 ~ 8051340 (+)

Expression


Co-expression Network