LOC120560565 (LOC103361063,LOC101470473,LOC101159109,LOC100710325,LOC108235010,LOC107393511)


Basic Information

Item Value
gene id LOC120560565
gene name LOC103361063,LOC101470473,LOC101159109,LOC100710325,LOC108235010,LOC107393511
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7550614 ~ 7572968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803201.1
ttccgGTCTACCTAACGTAGCAAACTAGCTCCAGTAGCACCGAGTAGCACTGGTAGCAACTTGAGAAGAGCCCACAAGCCTTGTCAAAAATTAGCTGCAGTACAATAAAGTGTAGGCATTTTTATGTCAACAAGGTGCTTAGAGGGCTGCGCAAATCTTTTTCTCAAAAAGCGGAGCTTTGGACTCTTAAAAACGGGTGTCCATCTCTTCTGAGTATATCCTGCTTCCACTCTGTGACTTATTGGTCACTAGAGGGGCCCCATCAGAGCAAGGGCCCAAACTGTAGCTCCAGGTCCCCTcttgtctgtgtgcgtgtgagagcTTGTGTTGAGTCCTCTGGAGACTCCCGGCTTGTCCAGCTAAGATGTCCTCCATCTTGCCGTTCACCCCTCCTGTGGTGAAGAGGCTGTTGGGCTGGAAGAAGTCTACTAGCGGCCCCGGCGGAGCAGGCGGTGGGGAACAGAACGGGCAAGAGGAGAAATGGTGCGAGAAGGCTGTGAAGAGCTTAGTGAAGAAGCTAAAGAAGACAGGCCAGCTAGATGAGCTGGAGAAAGCTATCACCACACAGAACTGCAACACCAAGTGTGTCACCATCCCCAGCAATTGCTCTGAAATATGGGGACTGAGTACACCAAATACGATAGAACAGTGGGATACATCAGGCCTATACAGCTACCCTGACCAAACCAGATCCCTGGATGGCCGCCTGCAGGTCTCCCACAGGAAGGGGCTTCCCCATGTTATCTACTGTCGCTTGTGGCGATGGCCGGACCTTCACAGCCACCACGAGCTGCGCGCCATCGAGGCCTGTGAGTATGCCTTCCACCTCAAGAAGGATGAGGTCTGCATCAACCCCTACCACTACCAGAGGGTGGAGACCCCAGTGCTGCCTCCTGTTCTTGTGCCAAGACACTCGGAAATCCTGCAAGATCTGCCACCTTTGGATGACTACACTCATTCCATACCTGAGAACACAAACTTCCCCGCAGGAATCGAACCTCCAAACAACTATATACCAGAAACGCCTCCACCCGGCTACATCAGTGAGGATGGGGAGGCAAGCGATCAACAGATGAATCAAAGTATGGACACAGgTTCTCCAGCAGAGCTCTCCCCCAGCTCCCTGTCTCCTGTCAACCACAGCATGGACCTCCAGCCGGTGACTTACTCTGAGCCAGCCTTCTGGTGCTCTATAGCCTATTACGAGCTGAACCAGCGCGTAGGGGAGACGTTCCACGCCTCTCAGCCCTCGCTGACGGTGGACGGATTCACCGATCCATCAAACTCTGAGCGCTTCTGCCTGGGCCTGCTGTCTAATGTCAACAGGAACGCCACTGTGGAGATGACCCGGAGGCACATAGGAAGAGGAGTTAGACTCTACTACATTGGAGGGGAGGTATTTGCTGAGTGCCTGAGTGATAGCGCCATCTTTGTCCAGAGTCCAAACTGCAACCAGCGGTATGGCTGGCATCCAGCAACAGTGTGTAAAATTCCTCCAGgttgtaATCTAAAAATCTTCAACAACCAGGAATTTGCAGCCCTGCTGGCTCAGTCTGTCAACCAGGGCTTTGAAGCTGTTTACCAGCTCACCAGGATGTGCACCATCCGCATGAGCTTTGTCAAAGGCTGGGGAGCTGAGTACAGGCGGCAGACTGTCACAAGCACTCCTTGCTGGATCGAGCTGCACTTGAACGGCCCCCTGCAGTGGCTGGACAAGGTTCTGACCCAGATGGGTTCCCCGTCTGCCCGCTGCTCCAGTATGTCCTAAACAGCTAaagaaatgcccccaaaaaacgCAGCCCATTACATGATCATTAAATTCCCAACTTGTGAGTcctttcatgaaaaaaaacccCACAGAATTAATTTTCTGTAACATTCTCCATAGTATTTGTGGCCCAGTTCCACATCCCTCTTttaactttacacacacacacacacacacacacacacacaaaagaacaaATGCACCTACACTGttgcactcacacatacagacttcagtaaaaaaaaaaatagaaaagaaattgGCACTTTGTTACCCATCTATGTCATGCACCTTGTTAAATTGCTTTTCCCCAAATCCTTAATATTAGATCTATTTGtggtacaaatgaaatgtatatTGGTTTTTAGTCCAGGAAGTAGGGGAAATACCAAAAATATCTGTGAATAGTTTCTCAGTATTGAAGATTGCTTGTATGAGTAACACAAGCTTGAATGCTAAAATGATCTTTGTTCCAGCCCACCCCAACCATTGTTCTGAACCTAAGTTTACTTTACTTTGGGGAAGCTTGGCCCCATCTTTTGTCAAGGGGAGGTGGCTTGGTGAAGAAACGATGATGGCCTTGGTGGCCGTTCTCCTCCTGAAGGAAACACCACACAATGTGTTTATGAAATTTGAATTGACTCTGCCAGAATGGCCCTTTCTTTTTGTAACTCTTGACGTGTGTCGTTATAAGACATACTTCTTAATGGACAAATAGGAatgttagtttaaaaaaaacaaaaaaacgaagtaattacaaaaaaaaacccaaacaaactgcaaactcgATCTGGATGTAGTTTATTTCTTTGTCATTATATGGCACTCTACATGTCCGTGGTTTAGTTGATTTCGATCCCCACTGAACAGCCTGCTATGGAAGCTAATGAGATGTTGGCCAGGCTTTGCAAGGTGCACTGGGCAGGGACCAGAGAATATCAGCTGTTTATCAaaagctatttttatttttattttttcctctttttgacTCGACACTGGGAGTCCTGGGGCTCTCCATGGTGAAGCATTGAACGTGTCACCGGGAGAAATTGAAGGTATCAATGAATTAATTCTGTTTTTAGCCTATATCCCCATTGTTTTGCTACTTTTTTGTATTCtcatgtatttttatatataaatatacttaaaaaaaattctgtcgTTCACTTTTTATTAAAGTAATATTTTCAAGACCACAGCTGTTTCTAAAGTGACATGGAGGGCATGGATCATTCCTTCGTTTTACCCAAAAGGTTTAGTTTGAATTAATTTCCAATTGCAGCTCTTTtgtcttgttaaaaaaaaaacaaaaaaaaaactcactgccCCATATGATGTGTAGCCTGTttctatcctttttttttttttttttttttttcttcaaagaaaTCCGGTGCATTTAAAGTACACAAAACGACAGATTGCCTGAAACCCCTTATCGACTTTGCTGTTAACGGTTTTAATGATTCCAGAGGCATGTAAAACTTTGTAATGGCCATTCATTTAGTCATCTCTTCACCTTTTTTGAAAAACACTCGTGACCTCTTGTAGCCTTTTGGTGCTTAGTCAAGCGGGTTAAGGTCAACCAGGTACaattggctttaaaaaaaaaaaaatgttacagaaaaATGGAAGGAAAAGCGGTTTTCTTCCATGAGGAAAGAAGAGCGAATGTGCCTGCACACTAGGACAttctgtgttaatgtgtgtattgtatttgttcTGTCTATTGAATACAGTATGTACAACAAAGACTTATTAGCTTAAACTCTGCCATTATTGTCATTATGTGGCTGTTGCGAGTTTAACATGtcgcccccccaccccacccctcccccttccccctccCTTCTTTTTGATGTAAATGTATTTACCTTACAGCACTAGTGATTGTACTTTAAGTGCACCTAGTGAAGTTTGGATTGGGGGAATTGAACCATGTGTTATAGGGTCCagtgttacattgtttttatctTTGGCCTACAACAtatgaatgtgaaaaaaaaaaatacattacaaaaaCTGACGTGGACCAGACGTACATATACATAACAgtagtacagtatgtgtgtatttaacAGTAATCTTTTTTGCAAAGCAGTCAGTACAGTAGATGTCGCAGTTGTTTTACCAGTAGAGGGCGGTATTGATAGagcagttctttttttttttttctttttttttttttttttgaccatAAGCTTCTCAGGCGTGTGGCATATTATGCAGACTTCATAAAACACTAATAAAGATTTTTATTCTCATGa
>XM_039803202.1
ttccgGTCTACCTAACGTAGCAAACTAGCTCCAGTAGCACCGAGTAGCACTGGTAGCAACTTGAGAAGAGCCCACAAGCCTTGTCAAAAATTAGCTGCAGTACAATAAAGTGTAGGCATTTTTATGTCAACAAGGTGCTTAGAGGGCTGCGCAAATCTTTTTCTCAAAAAGCGGAGCTTTGGACTCTTAAAAACGGGTGTCCATCTCTTCTGAGTATATCCTGCTTCCACTCTGTGACTTATTGGTCACTAGAGGGGCCCCATCAGAGCAAGGGCCCAAACTGTAGCTCCAGGTCCCCTcttgtctgtgtgcgtgtgagagcTTGTGTTGAGTCCTCTGGAGACTCCCGGCTTGTCCAGCTAAGATGTCCTCCATCTTGCCGTTCACCCCTCCTGTGGTGAAGAGGCTGTTGGGCTGGAAGAAGTCTACTAGCGGCCCCGGCGGAGCAGGCGGTGGGGAACAGAACGGGCAAGAGGAGAAATGGTGCGAGAAGGCTGTGAAGAGCTTAGTGAAGAAGCTAAAGAAGACAGGCCAGCTAGATGAGCTGGAGAAAGCTATCACCACACAGAACTGCAACACCAAGTGTGTCACCATCCCCAGCAATTGCTCTGAAATATGGGGACTGAGTACACCAAATACGATAGAACAGTGGGATACATCAGGCCTATACAGCTACCCTGACCAAACCAGATCCCTGGATGGCCGCCTGCAGGTCTCCCACAGGAAGGGGCTTCCCCATGTTATCTACTGTCGCTTGTGGCGATGGCCGGACCTTCACAGCCACCACGAGCTGCGCGCCATCGAGGCCTGTGAGTATGCCTTCCACCTCAAGAAGGATGAGGTCTGCATCAACCCCTACCACTACCAGAGGGTGGAGACCCCAGTGCTGCCTCCTGTTCTTGTGCCAAGACACTCGGAAATCCTGCAAGATCTGCCACCTTTGGATGACTACACTCATTCCATACCTGAGAACACAAACTTCCCCGCAGGAATCGAACCTCCAAACAACTATATACCAGAAACGCCTCCACCCGGCTACATCAGTGAGGATGGGGAGGCAAGCGATCAACAGATGAATCAAAgTTCTCCAGCAGAGCTCTCCCCCAGCTCCCTGTCTCCTGTCAACCACAGCATGGACCTCCAGCCGGTGACTTACTCTGAGCCAGCCTTCTGGTGCTCTATAGCCTATTACGAGCTGAACCAGCGCGTAGGGGAGACGTTCCACGCCTCTCAGCCCTCGCTGACGGTGGACGGATTCACCGATCCATCAAACTCTGAGCGCTTCTGCCTGGGCCTGCTGTCTAATGTCAACAGGAACGCCACTGTGGAGATGACCCGGAGGCACATAGGAAGAGGAGTTAGACTCTACTACATTGGAGGGGAGGTATTTGCTGAGTGCCTGAGTGATAGCGCCATCTTTGTCCAGAGTCCAAACTGCAACCAGCGGTATGGCTGGCATCCAGCAACAGTGTGTAAAATTCCTCCAGgttgtaATCTAAAAATCTTCAACAACCAGGAATTTGCAGCCCTGCTGGCTCAGTCTGTCAACCAGGGCTTTGAAGCTGTTTACCAGCTCACCAGGATGTGCACCATCCGCATGAGCTTTGTCAAAGGCTGGGGAGCTGAGTACAGGCGGCAGACTGTCACAAGCACTCCTTGCTGGATCGAGCTGCACTTGAACGGCCCCCTGCAGTGGCTGGACAAGGTTCTGACCCAGATGGGTTCCCCGTCTGCCCGCTGCTCCAGTATGTCCTAAACAGCTAaagaaatgcccccaaaaaacgCAGCCCATTACATGATCATTAAATTCCCAACTTGTGAGTcctttcatgaaaaaaaacccCACAGAATTAATTTTCTGTAACATTCTCCATAGTATTTGTGGCCCAGTTCCACATCCCTCTTttaactttacacacacacacacacacacacacacacacaaaagaacaaATGCACCTACACTGttgcactcacacatacagacttcagtaaaaaaaaaaatagaaaagaaattgGCACTTTGTTACCCATCTATGTCATGCACCTTGTTAAATTGCTTTTCCCCAAATCCTTAATATTAGATCTATTTGtggtacaaatgaaatgtatatTGGTTTTTAGTCCAGGAAGTAGGGGAAATACCAAAAATATCTGTGAATAGTTTCTCAGTATTGAAGATTGCTTGTATGAGTAACACAAGCTTGAATGCTAAAATGATCTTTGTTCCAGCCCACCCCAACCATTGTTCTGAACCTAAGTTTACTTTACTTTGGGGAAGCTTGGCCCCATCTTTTGTCAAGGGGAGGTGGCTTGGTGAAGAAACGATGATGGCCTTGGTGGCCGTTCTCCTCCTGAAGGAAACACCACACAATGTGTTTATGAAATTTGAATTGACTCTGCCAGAATGGCCCTTTCTTTTTGTAACTCTTGACGTGTGTCGTTATAAGACATACTTCTTAATGGACAAATAGGAatgttagtttaaaaaaaacaaaaaaacgaagtaattacaaaaaaaaacccaaacaaactgcaaactcgATCTGGATGTAGTTTATTTCTTTGTCATTATATGGCACTCTACATGTCCGTGGTTTAGTTGATTTCGATCCCCACTGAACAGCCTGCTATGGAAGCTAATGAGATGTTGGCCAGGCTTTGCAAGGTGCACTGGGCAGGGACCAGAGAATATCAGCTGTTTATCAaaagctatttttatttttattttttcctctttttgacTCGACACTGGGAGTCCTGGGGCTCTCCATGGTGAAGCATTGAACGTGTCACCGGGAGAAATTGAAGGTATCAATGAATTAATTCTGTTTTTAGCCTATATCCCCATTGTTTTGCTACTTTTTTGTATTCtcatgtatttttatatataaatatacttaaaaaaaattctgtcgTTCACTTTTTATTAAAGTAATATTTTCAAGACCACAGCTGTTTCTAAAGTGACATGGAGGGCATGGATCATTCCTTCGTTTTACCCAAAAGGTTTAGTTTGAATTAATTTCCAATTGCAGCTCTTTtgtcttgttaaaaaaaaaacaaaaaaaaaactcactgccCCATATGATGTGTAGCCTGTttctatcctttttttttttttttttttttttcttcaaagaaaTCCGGTGCATTTAAAGTACACAAAACGACAGATTGCCTGAAACCCCTTATCGACTTTGCTGTTAACGGTTTTAATGATTCCAGAGGCATGTAAAACTTTGTAATGGCCATTCATTTAGTCATCTCTTCACCTTTTTTGAAAAACACTCGTGACCTCTTGTAGCCTTTTGGTGCTTAGTCAAGCGGGTTAAGGTCAACCAGGTACaattggctttaaaaaaaaaaaaatgttacagaaaaATGGAAGGAAAAGCGGTTTTCTTCCATGAGGAAAGAAGAGCGAATGTGCCTGCACACTAGGACAttctgtgttaatgtgtgtattgtatttgttcTGTCTATTGAATACAGTATGTACAACAAAGACTTATTAGCTTAAACTCTGCCATTATTGTCATTATGTGGCTGTTGCGAGTTTAACATGtcgcccccccaccccacccctcccccttccccctccCTTCTTTTTGATGTAAATGTATTTACCTTACAGCACTAGTGATTGTACTTTAAGTGCACCTAGTGAAGTTTGGATTGGGGGAATTGAACCATGTGTTATAGGGTCCagtgttacattgtttttatctTTGGCCTACAACAtatgaatgtgaaaaaaaaaaatacattacaaaaaCTGACGTGGACCAGACGTACATATACATAACAgtagtacagtatgtgtgtatttaacAGTAATCTTTTTTGCAAAGCAGTCAGTACAGTAGATGTCGCAGTTGTTTTACCAGTAGAGGGCGGTATTGATAGagcagttctttttttttttttctttttttttttttttttgaccatAAGCTTCTCAGGCGTGTGGCATATTATGCAGACTTCATAAAACACTAATAAAGATTTTTATTCTCATGa

Function

NR:

description
PREDICTED: mothers against decapentaplegic homolog 2 isoform X1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04500 SMAD2; mothers against decapentaplegic homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803201.1 True 4035 mRNA 0.44 11 7550614 7572968
XM_039803202.1 False 4023 mRNA 0.44 11 7550614 7572968

Neighbor

gene id symbol gene type direction distance location
rchy1 rchy1 coding upstream 30842 7512039 ~ 7519772 (+)
bmp10 bmp10,LOC101468345 coding upstream 407594 7140197 ~ 7143020 (+)
arhgap25 arhgap25 coding upstream 413763 7108813 ~ 7136851 (+)
cds2 LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002 coding upstream 448720 7075326 ~ 7101894 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding upstream 523727 7008164 ~ 7026887 (+)
si:ch211-12e13.1 NA coding downstream 3267 7576235 ~ 7597214 (+)
LOC120560421 p2rx4,LOC102791813 coding downstream 59724 7632692 ~ 7639409 (+)
LOC120560946 p2rx4,LOC102791813 coding downstream 76805 7649773 ~ 7657652 (+)
gucd1 gucd1 coding downstream 85204 7658172 ~ 7663129 (+)
LOC120561481 NA coding downstream 111677 7684645 ~ 7684763 (+)
G59804 tia1,LOC104967008 non-coding upstream 46600 7498489 ~ 7504014 (+)
G59803 NA non-coding upstream 56410 7493888 ~ 7494204 (+)
G59696 NA non-coding upstream 287271 7179493 ~ 7263343 (+)
G59694 NA non-coding upstream 443760 7082014 ~ 7106854 (+)
G59687 NA non-coding upstream 521305 7027298 ~ 7029309 (+)
G59833 NA non-coding downstream 14827 7587795 ~ 7588630 (+)
G59826 NA non-coding downstream 57538 7630506 ~ 7631241 (+)
G59837 NA non-coding downstream 62627 7635595 ~ 7636054 (+)
G59839 NA non-coding downstream 73737 7646705 ~ 7647149 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding downstream 347809 7920777 ~ 7924556 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other upstream 499842 7009646 ~ 7050772 (+)
add2 LOC102210956,LOC102786375 other upstream 553758 6969119 ~ 6996856 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 831730 6674864 ~ 6718884 (+)
G59347 NA other upstream 2052860 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 2081404 5448061 ~ 5469210 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 1757 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 27124 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 52768 7625736 ~ 7630180 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other downstream 274703 7847671 ~ 7878371 (+)
cux2b cux2,LOC102795992 other downstream 374284 7947252 ~ 8051340 (+)

Expression


Co-expression Network