Gene
RNA
| Item | Value |
|---|---|
| gene id | elac1 |
| gene name | elac1 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053117.1 |
| NCBI id | CM020914.1 |
| chromosome length | 43979800 |
| location | 22884588 ~ 22891019 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| elac1 | Predicted to enable 3'-tRNA processing endoribonuclease activity. Predicted to act upstream of or within tRNA 3'-trailer cleavage. Predicted to be active in nucleus. Orthologous to human ELAC1 (elaC ribonuclease Z 1). |
| description |
|---|
| zinc phosphodiesterase ELAC protein 1 |
| id | name | namespace |
|---|---|---|
| GO:0042779 | tRNA 3'-trailer cleavage | biological_process |
| GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | biological_process |
| GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | molecular_function |
| id | description |
|---|---|
| K00784 | rnz; ribonuclease Z |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039803246.1 | True | 1391 | mRNA | 0.51 | 5 | 22884588 | 22891019 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| me2 | me2 | coding | upstream | 714 | 22862584 ~ 22883874 (+) |
| mapk4 | mapk4 | coding | upstream | 22715 | 22840502 ~ 22861873 (+) |
| tspan36 | LOC104956296 | coding | upstream | 49518 | 22826626 ~ 22835070 (+) |
| smarcad1a | smarcad1 | coding | upstream | 73196 | 22791538 ~ 22811392 (+) |
| atoh1a | NA | coding | upstream | 123751 | 22758111 ~ 22760837 (+) |
| ndufaf2 | ndufaf2 | coding | downstream | 366242 | 23257261 ~ 23273702 (+) |
| LOC120560302 | zswim6 | coding | downstream | 392060 | 23283079 ~ 23330548 (+) |
| LOC120561043 | NA | coding | downstream | 461931 | 23352950 ~ 23354264 (+) |
| dock8 | dock8 | coding | downstream | 517197 | 23408216 ~ 23487506 (+) |
| ercc6l2 | ercc6l2,LOC105014104 | coding | downstream | 813383 | 23704402 ~ 23722529 (+) |
| G63792 | NA | non-coding | upstream | 734464 | 22131884 ~ 22150124 (+) |
| G63715 | NA | non-coding | upstream | 1008901 | 21875445 ~ 21875687 (+) |
| G63714 | NA | non-coding | upstream | 1039450 | 21844832 ~ 21845138 (+) |
| LOC120560273 | NA | non-coding | upstream | 1263877 | 21608823 ~ 21620711 (+) |
| G63872 | NA | non-coding | downstream | 13016 | 22904035 ~ 22905966 (+) |
| G63914 | NA | non-coding | downstream | 96162 | 22987181 ~ 22988040 (+) |
| LOC120560300 | NA | non-coding | downstream | 328831 | 23219850 ~ 23245368 (+) |
| G63976 | smim15,LOC106580593,LOC103398561 | non-coding | downstream | 383901 | 23274920 ~ 23281109 (+) |
| G64026 | NA | non-coding | downstream | 539671 | 23430690 ~ 23432473 (+) |
| LOC120560787 | NA | other | upstream | 1285299 | 21588876 ~ 21599289 (+) |
| G63480 | rbm19 | other | upstream | 2206672 | 20676417 ~ 20677916 (+) |
| wdr31 | wdr31,LOC102796061 | other | upstream | 2394002 | 20473651 ~ 20490586 (+) |
| vps13a | vps13a | other | upstream | 2442495 | 20400947 ~ 20442093 (+) |
| c6h2orf68 | c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 | other | upstream | 3121064 | 19759596 ~ 19763524 (+) |
| G63905 | NA | other | downstream | 38880 | 22929899 ~ 22930205 (+) |
| LOC120560905 | clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 | other | downstream | 596948 | 23487967 ~ 23562285 (+) |
| G64108 | NA | other | downstream | 801643 | 23692662 ~ 23693291 (+) |
| prxl2c | aaed1 | other | downstream | 1930295 | 24821314 ~ 24823066 (+) |
| cdc14b | cdc14b,LOC102776968,LOC103141798,LOC106948523 | other | downstream | 1932699 | 24823718 ~ 24837448 (+) |
