LOC120560630 (set,LOC102777863,LOC107083999,LOC100696975,LOC105014167)


Basic Information

Item Value
gene id LOC120560630
gene name set,LOC102777863,LOC107083999,LOC100696975,LOC105014167
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34310100 ~ 34314260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803312.1
TGAAAGGAGCGCGTGAGCGGCGGTTGCTGTGACTTCCTCGCTCATCGGCAGCTACATTGTGCGGACAGCAGCACGTTGTTGGCTTCTGCACGCTGAACTTTAATTCTCCTGTTCAAGGAGAAACCAGATTTCAAAGCTACCAGTTGTTTTCTCAGACGTGTGTAAGTTACCCCAGCTTGCGAAAACATGTCGGCCTCGGCGGCAAAAGTGAGTAAAAAGGAGCTGAACTCGAACCATGACGGAGCGGACGAAACCTCCGagaAAGAGCAGCAAGAAGCTATTGAACACATTGACGAAGTTCAAAACGAAATTGACAgGTTGAACGAGCAAGCCAGTGAGGAGATCCTCAAAGTAGAacagaaatacaacaaactCCGTCAGCCATTCTTTCAGAAGAGGTCAGAACTGATCGCCAAAATCCCCAACTTCTGGGTCACCACGTTTGTCAACCATCCACAAGTATCTGCCCTACTGGGAGAGGAAGATGAAGAAGCACTTCATTACCTGAGCCGAGTGGAGGTGACAGAGTTTGAAGACATCAAGTCAGGCTACAGAATAGATTTTTATTTCGATGAAAATCCGTACTTCGAAAACAAAGTACTTTCCAAAGAGTTCCATTTGAATGAGAGCGGAGACCCAtcttcaaagtcgacagaaattAAATGGAAATCAGGAAAGgACCTGACCAAGCGCTCCAGCCAGACACAGAACAAGGCCGGAAGGAAGAGGCAACATGAAGAGCCAGAGAGTTTCTTCACTTGGTTCACTGATCATGCTGACGCTGGCGCTGATGAGCTCGGGGAGGTCATCAAGGATGACATCTGGCCAAACCCCCTGCAGTACTACCTGGTTCCTGACATGGATGACGAAGAGGGTGAAGGtgaggatgatgaagaggaCGAGGAAGGTCTGGAGGACATAGACGAGGAGGGAGATGAAGATGGagaggatgatgaagaggaCGATGGAGAAGATGGAGAGGATGATGAGGGAGAAGACGACTAAGAAATAACATCTACCCAGACCCTCAACCTTCTATTCCCTGTTTGGTTTTTCCACTCACGTTCGGGAGCaaaggttttaatttgtttttgttttttttacttttttattttataaatctgTGTGCTTCATTTTCCATTCTGAAGCCTCTTCACCTTGTTGGTGCCATGTTATGTTCTCCTTTGACTCATCTAAGGCCAATGGCACTTTGCCCTGAATTGTGAGTAACATCCCCAAAGTCAtctcaaaaataataataaaagtataaaaaatagAATCAGCACGGCATCCTGAGTAGAAATTAAAGACAACACGCACAGAATTCCTCCTGTTAACGGTTGTGATAAATTGACTTAAAGCCATGGTGTAGTGACCCAGCGCTAGTTGACCTCAATTTTCcctccatttttattttatttttttcagttggGGTGTTGATCCcttgaaaaaaactgttattttCCCCCCTATGTGCTTAACGAGTACCAGCTCATTCCTTTGACTTGTAATGTTTAGGGGGAGGGCCGGGAGTATGTTGGTTATTGGGGAGAGTGGTTATTTTGACACCATTTctatgggacttttttttttttttattgtattgttttacagatatccATGAGATTTGAaatgacatttttaataaagaacaaaatggaaaaaaaaagcttgtaaatgTTGGCCCCCACTACTTCataggtaaaataaaaatacctgTTATCTCA

Function

symbol description
set Predicted to enable chromatin binding activity and histone binding activity. Involved in negative regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of neuron apoptotic process. Located in several cellular components, including lipid droplet; nucleoplasm; and perinuclear region of cytoplasm. Part of protein-containing complex. Implicated in autosomal dominant non-syndromic intellectual disability.

NR:

description
PREDICTED: protein SET

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803312.1 True 1727 mRNA 0.43 8 34310100 34314260

Neighbor

gene id symbol gene type direction distance location
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding upstream 20447 34280979 ~ 34289653 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding upstream 29845 34272947 ~ 34280255 (+)
cnot6l cnot6l coding upstream 122480 34170475 ~ 34187620 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding upstream 519290 33779007 ~ 33790810 (+)
prkg2 prkg2 coding upstream 966085 33303339 ~ 33344015 (+)
LOC120560629 LOC100693693 coding downstream 2046 34316306 ~ 34330925 (+)
gle1 gle1 coding downstream 17582 34331842 ~ 34344199 (+)
si:ch211-251j10.3 ralgds,LOC102776401 coding downstream 37451 34351711 ~ 34421494 (+)
smarcb1a smarcb1,LOC103361055,LOC106521870,LOC108242792,LOC100696262,LOC105917974 coding downstream 113561 34427821 ~ 34438507 (+)
gstt1a LOC104934872 coding downstream 213149 34527409 ~ 34535705 (+)
G66652 NA non-coding upstream 28171 34187830 ~ 34281929 (+)
LOC120560041 NA non-coding upstream 433093 33876175 ~ 33877007 (+)
LOC120561187 NA non-coding upstream 537566 33769844 ~ 33772534 (+)
G66571 NA non-coding upstream 554145 33755569 ~ 33755955 (+)
G66568 NA non-coding upstream 584318 33725520 ~ 33725782 (+)
G66689 NA non-coding downstream 116682 34430942 ~ 34439928 (+)
G66692 LOC104949787,LOC104934882 non-coding downstream 142230 34456490 ~ 34456749 (+)
G66695 NA non-coding downstream 172278 34486538 ~ 34486751 (+)
G66769 NA non-coding downstream 193882 34508142 ~ 34509613 (+)
G66830 NA non-coding downstream 501329 34815589 ~ 34816327 (+)
G66578 NA other upstream 533702 33775925 ~ 33776398 (+)
antxr2a antxr2 other upstream 706475 33517599 ~ 33603625 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 1197284 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 1697162 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 1799363 32477038 ~ 32510737 (+)
cfap157 NA other downstream 199750 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 451670 34765930 ~ 34773806 (+)
G66832 NA other downstream 547239 34861499 ~ 34864690 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other downstream 732584 35046844 ~ 35059631 (+)
LOC120560625 cep120 other downstream 1208405 35522665 ~ 35549231 (+)

Expression


Co-expression Network