fem1c (fem1c,LOC102782917)


Basic Information

Item Value
gene id fem1c
gene name fem1c,LOC102782917
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21908636 ~ 21917879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803346.1
CGTCAATCACTTGCGCTAGtcgagaaaaaaaagactgcgTTGGGTTTGCGATTTGACAGAAACTGAGTCGTGATCATCCGGTCGAGCCGTGGGTGGATAGCCGTCCATATTTACCTTCGCTGAGATTATTGTCGTGCCAGCTTGCTGAGGGGCTACGTGGACGAGTGTTGTTCGCCGCTTTGGGGGTAACGTCTCTCGCTTGTTTttcgacgtgtgtgtgtgttacccagAAGCGGCCCGGACAGTGGGGGTATCCCCTGATTGTTTGGCCGAACAACAACCGAACGTCGTTTTCCATGGCTAACGAGCGAATAAGCTAACCGCAGCACGGCGTAACGGGTGGGGGTGGATGTCTGTAGGTCGGCCCTTAGGAAGCGAATATAAATAACGTCTCAGCAGTGTGTTGTGGAACAATGACCGGCACAGGAAGCAGATCTAATGGAGACGAGCTTCTCGGAGGGTAAGACATGTCAGTGGGTGGGTATCGGCTGAACGATCAATAAAGAGGTGTAaagtaacgttagttagctagctagtcggTTAGCTGAATTAATCAAGGAAGTTGATTAGCCTTGCTATCTTGGAGACAAATGCACTACTGGACCAAGGGTCGTCTCAGACGTTTgagttattaatttatttagagATTCACACAACTGGCTGGTGATGCCAATTTTTAAAGCTGTAGTTTAGAAAGACAATTTGCCGTGGGCTTTTAACCAAaacggtagctaacgttagtgagTTGGCGCTTGTAAACAAAGGGTCCCGAGATCCACCTGGCCACAGCAACGTTACACCTCGGGTAATCGTTGACCGATTGTTTCACGGACATCGTTGCCGTTTTATTTAACAGTGAAACTAACGCTCAGAGATGGATTTAAAGACCGCAGTATTTAACGCAGCCAGGGACGGTAAGCTCCGGCTGCTACAGAAACTGTTGGAGAACAAAGATGGACACGAGGTGACCAAGTTGATGGGCGAGAAGACAAACGGGGCCACCCCACTCCTGATGGCCTCCCGGTACGGCCACCTGGACCTAGTGGAGTATCTGCTGGAGTGCTGCAGCGCGCCTGTTGAGGCCGGGGGCTCGGTGAACTTTGACGGGGAGACCATCGAGGGAGCGCCCCCTCTCTGGGCAGCCTCGGCGGCGGGTCACCTGAAGGTGGTGCAGTCCCTGCTGGGTCACGGAGCTTCTGTCAACAGCACGACCCTGACCAACTCGACACCCCTAAGGGCAGCCTGCTTTGACGGCCACCTGGACATTGTGAAATACCTGGTGGAGCACAAAGCTGACCTGGAGGTTGCCAACAGACACGGCCACACGTGTCTCATGATTTCCTGCTACAAAGGACACAAGGAGATTGCACAGTACCTACTGGAGAGAGGTGCAGATGTCAACAGGAAAAGTGTAAAAGGCAACACGGCACTTCATGACTGTGCAGAGTCGGGCAGTCTGGAGATCATGCGAATGTTACTGCAGTTTGGAGCATCCATGGAGCAAGATGGCTACGGCATGACCCCCCTGCTCTCTGCCAGCGTCACAGGCCACACTAACATCGTAGACGACCTGACGATGCACCAGCAGACAAGCCACACAGAGCGCATTGATGCCCTGGAGCTTCTGGGAGCCACATTTGTTGACAAGAAGAGAGATCTGCTCGGAGCTTTAAAATACTGGAAGAGAGCCATGGACCTCAGGTACATGGACGGTAACAACATCGTCCATAAACCAGAATCCAAGCAGCTGATCATGGCATATGACTACGCCAGGGAAGTAACAAACGGAGAAGAGCTGGATGGGCTGATATCTGACCCGGACGAAATGCGGATGCAGGCACTGCTCATCCGTGAAAGAATCCTCGGCCCACAACATCCAGACACGTCTTATTACATCCGTTACAGAGGTGCTGTCTACGCTGACTCTGGGAACTTTGAGCGCTGTATCAATCTGTGGAAGTATGCATTGGACATGCAACAGAGCAACCTGGACCCCCTCAGCCCTATGACGGCCTCCAGCCTGCTGTCTTTCGCTGAGCTCTTCTCTTTCATGCTGCAGGACCGAGCCAAAGGGCTCCTGGGAACATCGGTGTCATTTGAGGACTTGATGGGGATCCTTTCCAAGAGTGTGTTGGAGATAGAGCGGGCAGTTAAACAAAATGGACCGATGCCTCCTGACCCTGCCCAGCTCAGCAAGGCCCTGTCAATCATCCTGCACCTCATTTGTCTTTTAGAGAAGGTGCCCTGTACTGCAGAGCAGGACCACTTCAAGAAGGAAACCATCTATAAATTCCTGAAGCTCCAGCCGTGTGGTAAGAACGGCTACAGTCCACTACACCTGGCAGTCGACCGCAACACCACCTGTGTGGGCCGCTATCCCGTGTGCAAGTTCCCCTCCCTCACAGTCGCCTCCATCCTTCTTGAGTGTGGGGCAGATGTGAACAGCCGCGATGAAGATGACAACAGCCCCCTTCACATAGCTGCATCCAATGGTCACCCTGACATCATGAACCTCCTGATATCATGCGGGACTCACTTTGACAGCACCAATGCCTTCCAACAAACAGCCTGCGACCTCCTGGATGAGAAGGAGCTGCCCAGGAATATAATCCAGCCCATAAACCACACCACGCTGCAGTGCCTGGCCGCCAGGGCCATTGTCAAGCACAGCCTCGTTTACCGGGGAAACATCCCTGAGAAACTAGAGGCCTTCGTCTTGCTCCACAGATAATGATCGTGAGTAGGGGgggaatgaatggatggatggatggatggatggatagaaagAGGAGGGGGATTGATCACACCAAGTGGACTGGACAGACTGAGGACCATTATAGTTCAGGGCCTGACCCACAAGGTGTTTGAGGACCTTAAAGACACTATTTTGTGGGTTAGGTTTGCAAATTCAAACTATTTTTGGAGAGTATAAACTTGAAGATTTGTGTGAACAAAAATGTCCTCATTCAACCAGGAGAAACTGAAAAATGATCGGGGTAAATTGGAGAAATGAGTTACCATTTTATTCTTTCGGTTTGCTGTTTCATGAAGCCACAGCACTGACTGGTCACAGCTTGATCCGTGGGGATGAATTACGAGTGGATTGCAACATGGACAAACCCATCTCTGGATGAACTCAACAAGAGGTTTacgttttttttgggggttgtgcttt

Function

symbol description
fem1c Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of ubiquitin ligase complex. Orthologous to human FEM1C (fem-1 homolog C).

NR:

description
PREDICTED: protein fem-1 homolog C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803346.1 True 3175 mRNA 0.51 6 21908636 21917879

Neighbor

gene id symbol gene type direction distance location
tmed7 LOC104949726,LOC102200599,LOC100701005,LOC101484666 coding upstream 1809 21903212 ~ 21906827 (+)
LOC120560549 smad4,LOC104933118,LOC101068039,LOC101168872 coding upstream 16497 21880130 ~ 21892139 (+)
rasef rasef coding upstream 124719 21765626 ~ 21783917 (+)
LOC120560723 NA coding upstream 146461 21751888 ~ 21762175 (+)
frmd3 frmd3 coding upstream 157052 21692150 ~ 21751584 (+)
LOC120560655 ccdc112 coding downstream 12294 21930173 ~ 21936780 (+)
pggt1b pggt1b coding downstream 19121 21937000 ~ 21951913 (+)
trim36 trim36 coding downstream 37699 21955578 ~ 21989582 (+)
ccser1 ccser1,LOC102783788 coding downstream 73474 21991353 ~ 22121315 (+)
grid2 grid2,LOC102784241 coding downstream 205156 22123035 ~ 22754750 (+)
G63715 NA non-coding upstream 32949 21875445 ~ 21875687 (+)
G63714 NA non-coding upstream 63498 21844832 ~ 21845138 (+)
LOC120560273 NA non-coding upstream 287925 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding upstream 290034 21616223 ~ 21618602 (+)
G63628 NA non-coding upstream 421598 21486769 ~ 21487038 (+)
G63792 NA non-coding downstream 214005 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 986156 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1069302 22987181 ~ 22988040 (+)
LOC120560300 NA non-coding downstream 1301971 23219850 ~ 23245368 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding downstream 1357041 23274920 ~ 23281109 (+)
LOC120560787 NA other upstream 309347 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 1230720 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1418050 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1466543 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 2145112 19759596 ~ 19763524 (+)
G63905 NA other downstream 1012020 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1570088 23487967 ~ 23562285 (+)
G64108 NA other downstream 1774783 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 2903435 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 2905839 24823718 ~ 24837448 (+)

Expression


Co-expression Network