Item | Value |
---|---|
gene id | grid2 |
gene name | grid2,LOC102784241 |
gene type | coding |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053117.1 |
NCBI id | CM020914.1 |
chromosome length | 43979800 |
location | 22123035 ~ 22754750 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
grid2 | Predicted to enable ionotropic glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ionotropic glutamate receptor signaling pathway. Predicted to be integral component of plasma membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 18. Orthologous to human GRID2 (glutamate ionotropic receptor delta type subunit 2). |
description |
---|
glutamate receptor ionotropic, delta-2 isoform X1 |
id | name | namespace |
---|---|---|
GO:0035235 | ionotropic glutamate receptor signaling pathway | biological_process |
GO:0034220 | ion transmembrane transport | biological_process |
GO:0045211 | postsynaptic membrane | cellular_component |
GO:0030054 | cell junction | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005234 | extracellularly glutamate-gated ion channel activity | molecular_function |
GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
id | description |
---|---|
K05207 | GRID2; glutamate receptor delta-2 subunit |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_039803350.1 | True | 6237 | mRNA | 0.46 | 17 | 22123035 | 22754750 |
XM_039803351.1 | False | 4012 | mRNA | 0.52 | 16 | 22191058 | 22752013 |
XM_039803352.1 | False | 3540 | mRNA | 0.52 | 18 | 22123035 | 22751796 |
XM_039803353.1 | False | 3466 | mRNA | 0.52 | 16 | 22123035 | 22752013 |
XM_039803354.1 | False | 3200 | mRNA | 0.53 | 17 | 22187468 | 22752013 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
ccser1 | ccser1,LOC102783788 | coding | upstream | 1720 | 21991353 ~ 22121315 (+) |
trim36 | trim36 | coding | upstream | 133453 | 21955578 ~ 21989582 (+) |
pggt1b | pggt1b | coding | upstream | 171122 | 21937000 ~ 21951913 (+) |
LOC120560655 | ccdc112 | coding | upstream | 186255 | 21930173 ~ 21936780 (+) |
fem1c | fem1c,LOC102782917 | coding | upstream | 205156 | 21908636 ~ 21917879 (+) |
atoh1a | NA | coding | downstream | 3361 | 22758111 ~ 22760837 (+) |
smarcad1a | smarcad1 | coding | downstream | 36788 | 22791538 ~ 22811392 (+) |
tspan36 | LOC104956296 | coding | downstream | 71876 | 22826626 ~ 22835070 (+) |
mapk4 | mapk4 | coding | downstream | 85752 | 22840502 ~ 22861873 (+) |
me2 | me2 | coding | downstream | 107834 | 22862584 ~ 22883874 (+) |
G63715 | NA | non-coding | upstream | 247348 | 21875445 ~ 21875687 (+) |
G63714 | NA | non-coding | upstream | 277897 | 21844832 ~ 21845138 (+) |
LOC120560273 | NA | non-coding | upstream | 502324 | 21608823 ~ 21620711 (+) |
G63641 | rmi1,LOC102777824,LOC104967280 | non-coding | upstream | 504433 | 21616223 ~ 21618602 (+) |
G63628 | NA | non-coding | upstream | 635997 | 21486769 ~ 21487038 (+) |
G63872 | NA | non-coding | downstream | 149285 | 22904035 ~ 22905966 (+) |
G63914 | NA | non-coding | downstream | 232431 | 22987181 ~ 22988040 (+) |
LOC120560300 | NA | non-coding | downstream | 465100 | 23219850 ~ 23245368 (+) |
G63976 | smim15,LOC106580593,LOC103398561 | non-coding | downstream | 520170 | 23274920 ~ 23281109 (+) |
G64026 | NA | non-coding | downstream | 675940 | 23430690 ~ 23432473 (+) |
LOC120560787 | NA | other | upstream | 523746 | 21588876 ~ 21599289 (+) |
G63480 | rbm19 | other | upstream | 1445119 | 20676417 ~ 20677916 (+) |
wdr31 | wdr31,LOC102796061 | other | upstream | 1632449 | 20473651 ~ 20490586 (+) |
vps13a | vps13a | other | upstream | 1680942 | 20400947 ~ 20442093 (+) |
c6h2orf68 | c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 | other | upstream | 2359511 | 19759596 ~ 19763524 (+) |
G63905 | NA | other | downstream | 175149 | 22929899 ~ 22930205 (+) |
LOC120560905 | clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 | other | downstream | 733217 | 23487967 ~ 23562285 (+) |
G64108 | NA | other | downstream | 937912 | 23692662 ~ 23693291 (+) |
prxl2c | aaed1 | other | downstream | 2066564 | 24821314 ~ 24823066 (+) |
cdc14b | cdc14b,LOC102776968,LOC103141798,LOC106948523 | other | downstream | 2068968 | 24823718 ~ 24837448 (+) |