LOC120560655 (ccdc112)


Basic Information

Item Value
gene id LOC120560655
gene name ccdc112
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21930173 ~ 21936780 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803366.1
ttgtttacagaGTTCACTTAGCTAAACATGGCCACCCTAGCAACCTCACGATGCGCTGATAAACATTGCCCGGTAGCTATCATAGAGTTATTCACTGCATGTGTTGTAAAATTGACATGTATTAGTTAGCTAGTCGACAACATTTTAATTCTTTCAAATGTTTAACATTTTCAGGGAAAGCGGACATATGGCGTTTCGTTACTGTTGAACGACTGACGAGCTAGCGGTCGTTAACAAATACTAGCCGATGTTGCATactttagctaacgttactgacaTAACGTTACTGAAATCCGGTGTACACTCGTCATTAATTAGTGTAATAATGTTGCAGTGTTTGTCTCATATGGTTTGTCTGGTGTTTTGTAAGAGATATGTCGtccctgctagctagctagctgtccgAAAATGAATATGTTGGTTTGGTTAACATGATGCTGTGGTTCCAGATTGACGAGGCACCAGTATTACATTATCGACATCGATGACGTTGACGTTAAGGAAGCTCCATCCAAAATGGATTATATGTATAAATGCACTTGTTGTTATATATTGCACTATGATCAGCTGTTGTGTTTTCCTTTCACTAAATGCATTtgagcagggagagagagactccAGCAGTGTCCAGCAGCAGCTCTGCACATCACCCCTTGTCAGCAGTGACAGCGTGGATCAGAGGCTAGCCAGGCAGAAAGCTGCTCAGTTTCTCAGGGAAGCCGAGAAAAACAGGAGGCAGATTGAAAAGTTGGAGAAAGAGAGGACGCTGACTGCTCAGTGCAGAAAGAATGGCTGGACAGATGTGCCTGGAGAACTGGAAGAGTACGAGAAAGTGCTGGAGGAAGAAAGACATGCTGAGAagaCGAATCTTCAAAAGCAGCTAGTGAAGATTCATAATGGTGTGAGGAAATTTCAGAGACAGCTAATAGATGTGAAGCCAACTCCTGAGTTGATTGAAAGACTGAAGGAAATAATGTCAGAGGTGGAAATCTCAATTAACACCCTAAAGGAGGAACAGCGTTCATGCTTTGAGGAACTTTTGAAGGAGGAGAGGACATGCAGACAGGAGATCGCTGCGTATGAGAAGAAGATTGAAAACTTGAGCCTTGCTGTCAAATCCCACCCCAAACTACCCACAGCTCCCACTGTTAAGacCAAACCCCTGGACAGAGACCTCCCTGCAGAGGTCAGAGCACTGGAGGCTTTCCTGCTGAAGACAGGAGGCCCTTCTGGTGGCTGGGACCAATATGACCACCAAGCCTTCCTTAAAGTCTGGACAAAGCACAGTGGACAACCAGCCTACAGGAAAGAGGTCAAACTGTACCTGCCTAGTAAAACATTGGAAGAGATAGAGCAACATGAGGACTGGCATCAGGAGCTGATCTACCtacaggacagaaagagagagGCTATTCAGCGGTGGAAAGCCAGCAAGCATCAGGAACGCCAGACCAGAATACAGAGTCAGGAGGAAGTGGAGGAGGCAGGGATTAGGGAGAAGGAGGCCAAGAGCCAGGTCCACCAACACAGGACTGAGGATGAGAGGAGGGAGGCGGCACAGCGACTGGAGGAGTGGAAGGAAGAGAAAAGAAGGAAggagaaacaggaagaggagcagaggcTGGCTGAGGAGGTACAAAAGAGGAGACGGGCAAAGGAAGAGCGTCGCCGGCAGCTGGAAGTGAAGCTGACCGTTGAGGAGCAGCTACgactgaagagagaggaggaggaggaacaggggaggaggaggagagaggaggaacagAGGGAGATGGACGAGAGGAGAAGGGAGGCAGTAAAGGGCATCAAACGCTTTACTGAAAGGGATCTTCAAAAGGTGGAGGCAAAGCTTCAGGAGAAACAGCTCagggaaaaagaggaagaggaaagacaGAGGAGAATCACTGCTAAGTTGAAGGAGAAGGTGGATAGTCACATCAGCAGAGACCCCTCCAGGCTCACCCGTCCCACTAAGGGTTGGGAGGAGCGAATGAAACACATTGGACCTTCAGGAGGAGGGCCTGTGCTACAGATGTTTCACAGAGCTGTTCCCACTTGGAGACAAGGCCTGTGATGTGCAACAAAGGAAGTTAACTGAAATGCATtcagaatgttttttgtttttatagaaaTTATATTATATGAAAAAGTATGCAATGGGACCTCAACACCAGATTGTGCCTTTCCTTGAATCTACTGTTAGCTGCTGTTTGCTATAACTTACTTTAACTTTTACAAAaccattatttaaaataaaagcttgtGTAAACTTCA
>XM_039803367.1
attttgtttacagaGTTCACTTAGCTAAACATGGCCACCCTAGCAACCTCACGATGCGCTGATAAACATTGCCCGcagggagagagagactccAGCAGTGTCCAGCAGCAGCTCTGCACATCACCCCTTGTCAGCAGTGACAGCGTGGATCAGAGGCTAGCCAGGCAGAAAGCTGCTCAGTTTCTCAGGGAAGCCGAGAAAAACAGGAGGCAGATTGAAAAGTTGGAGAAAGAGAGGACGCTGACTGCTCAGTGCAGAAAGAATGGCTGGACAGATGTGCCTGGAGAACTGGAAGAGTACGAGAAAGTGCTGGAGGAAGAAAGACATGCTGAGAagaCGAATCTTCAAAAGCAGCTAGTGAAGATTCATAATGGTGTGAGGAAATTTCAGAGACAGCTAATAGATGTGAAGCCAACTCCTGAGTTGATTGAAAGACTGAAGGAAATAATGTCAGAGGTGGAAATCTCAATTAACACCCTAAAGGAGGAACAGCGTTCATGCTTTGAGGAACTTTTGAAGGAGGAGAGGACATGCAGACAGGAGATCGCTGCGTATGAGAAGAAGATTGAAAACTTGAGCCTTGCTGTCAAATCCCACCCCAAACTACCCACAGCTCCCACTGTTAAGacCAAACCCCTGGACAGAGACCTCCCTGCAGAGGTCAGAGCACTGGAGGCTTTCCTGCTGAAGACAGGAGGCCCTTCTGGTGGCTGGGACCAATATGACCACCAAGCCTTCCTTAAAGTCTGGACAAAGCACAGTGGACAACCAGCCTACAGGAAAGAGGTCAAACTGTACCTGCCTAGTAAAACATTGGAAGAGATAGAGCAACATGAGGACTGGCATCAGGAGCTGATCTACCtacaggacagaaagagagagGCTATTCAGCGGTGGAAAGCCAGCAAGCATCAGGAACGCCAGACCAGAATACAGAGTCAGGAGGAAGTGGAGGAGGCAGGGATTAGGGAGAAGGAGGCCAAGAGCCAGGTCCACCAACACAGGACTGAGGATGAGAGGAGGGAGGCGGCACAGCGACTGGAGGAGTGGAAGGAAGAGAAAAGAAGGAAggagaaacaggaagaggagcagaggcTGGCTGAGGAGGTACAAAAGAGGAGACGGGCAAAGGAAGAGCGTCGCCGGCAGCTGGAAGTGAAGCTGACCGTTGAGGAGCAGCTACgactgaagagagaggaggaggaggaacaggggaggaggaggagagaggaggaacagAGGGAGATGGACGAGAGGAGAAGGGAGGCAGTAAAGGGCATCAAACGCTTTACTGAAAGGGATCTTCAAAAGGTGGAGGCAAAGCTTCAGGAGAAACAGCTCagggaaaaagaggaagaggaaagacaGAGGAGAATCACTGCTAAGTTGAAGGAGAAGGTGGATAGTCACATCAGCAGAGACCCCTCCAGGCTCACCCGTCCCACTAAGGGTTGGGAGGAGCGAATGAAACACATTGGACCTTCAGGAGGAGGGCCTGTGCTACAGATGTTTCACAGAGCTGTTCCCACTTGGAGACAAGGCCTGTGATGTGCAACAAAGGAAGTTAACTGAAATGCATtcagaatgttttttgtttttatagaaaTTATATTATATGAAAAAGTATGCAATGGGACCTCAACACCAGATTGTGCCTTTCCTTGAATCTACTGTTAGCTGCTGTTTGCTATAACTTACTTTAACTTTTACAAAaccattatttaaaataaaagcttgtGTAAACTTCA
>XM_039803368.1
TGGCAAACTAcgctttttaaataaagtttattttgtttacagaGTTCACTTAGCTAAACATGGCCACCCTAGCAACCTCACGATGCGCTGATAAACATTGCCCGggagagagagactccAGCAGTGTCCAGCAGCAGCTCTGCACATCACCCCTTGTCAGCAGTGACAGCGTGGATCAGAGGCTAGCCAGGCAGAAAGCTGCTCAGTTTCTCAGGGAAGCCGAGAAAAACAGGAGGCAGATTGAAAAGTTGGAGAAAGAGAGGACGCTGACTGCTCAGTGCAGAAAGAATGGCTGGACAGATGTGCCTGGAGAACTGGAAGAGTACGAGAAAGTGCTGGAGGAAGAAAGACATGCTGAGAagaCGAATCTTCAAAAGCAGCTAGTGAAGATTCATAATGGTGTGAGGAAATTTCAGAGACAGCTAATAGATGTGAAGCCAACTCCTGAGTTGATTGAAAGACTGAAGGAAATAATGTCAGAGGTGGAAATCTCAATTAACACCCTAAAGGAGGAACAGCGTTCATGCTTTGAGGAACTTTTGAAGGAGGAGAGGACATGCAGACAGGAGATCGCTGCGTATGAGAAGAAGATTGAAAACTTGAGCCTTGCTGTCAAATCCCACCCCAAACTACCCACAGCTCCCACTGTTAAGacCAAACCCCTGGACAGAGACCTCCCTGCAGAGGTCAGAGCACTGGAGGCTTTCCTGCTGAAGACAGGAGGCCCTTCTGGTGGCTGGGACCAATATGACCACCAAGCCTTCCTTAAAGTCTGGACAAAGCACAGTGGACAACCAGCCTACAGGAAAGAGGTCAAACTGTACCTGCCTAGTAAAACATTGGAAGAGATAGAGCAACATGAGGACTGGCATCAGGAGCTGATCTACCtacaggacagaaagagagagGCTATTCAGCGGTGGAAAGCCAGCAAGCATCAGGAACGCCAGACCAGAATACAGAGTCAGGAGGAAGTGGAGGAGGCAGGGATTAGGGAGAAGGAGGCCAAGAGCCAGGTCCACCAACACAGGACTGAGGATGAGAGGAGGGAGGCGGCACAGCGACTGGAGGAGTGGAAGGAAGAGAAAAGAAGGAAggagaaacaggaagaggagcagaggcTGGCTGAGGAGGTACAAAAGAGGAGACGGGCAAAGGAAGAGCGTCGCCGGCAGCTGGAAGTGAAGCTGACCGTTGAGGAGCAGCTACgactgaagagagaggaggaggaggaacaggggaggaggaggagagaggaggaacagAGGGAGATGGACGAGAGGAGAAGGGAGGCAGTAAAGGGCATCAAACGCTTTACTGAAAGGGATCTTCAAAAGGTGGAGGCAAAGCTTCAGGAGAAACAGCTCagggaaaaagaggaagaggaaagacaGAGGAGAATCACTGCTAAGTTGAAGGAGAAGGTGGATAGTCACATCAGCAGAGACCCCTCCAGGCTCACCCGTCCCACTAAGGGTTGGGAGGAGCGAATGAAACACATTGGACCTTCAGGAGGAGGGCCTGTGCTACAGATGTTTCACAGAGCTGTTCCCACTTGGAGACAAGGCCTGTGATGTGCAACAAAGGAAGTTAACTGAAATGCATtcagaatgttttttgtttttatagaaaTTATATTATATGAAAAAGTATGCAATGGGACCTCAACACCAGATTGTGCCTTTCCTTGAATCTACTGTTAGCTGCTGTTTGCTATAACTTACTTTAACTTTTACAAAaccattatttaaaataaaagcttgtGTAAACTTCA

Function

symbol description
ccdc112 Orthologous to human CCDC112 (coiled-coil domain containing 112).

NR:

description
PREDICTED: coiled-coil domain-containing protein 112

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803366.1 True 2274 mRNA 0.46 13 21930205 21936780
XM_039803367.1 False 1748 mRNA 0.49 14 21930202 21936780
XM_039803368.1 False 1774 mRNA 0.48 14 21930173 21936780

Neighbor

gene id symbol gene type direction distance location
fem1c fem1c,LOC102782917 coding upstream 12294 21908636 ~ 21917879 (+)
tmed7 LOC104949726,LOC102200599,LOC100701005,LOC101484666 coding upstream 23346 21903212 ~ 21906827 (+)
LOC120560549 smad4,LOC104933118,LOC101068039,LOC101168872 coding upstream 38034 21880130 ~ 21892139 (+)
rasef rasef coding upstream 146256 21765626 ~ 21783917 (+)
LOC120560723 NA coding upstream 167998 21751888 ~ 21762175 (+)
pggt1b pggt1b coding downstream 220 21937000 ~ 21951913 (+)
trim36 trim36 coding downstream 18798 21955578 ~ 21989582 (+)
ccser1 ccser1,LOC102783788 coding downstream 54573 21991353 ~ 22121315 (+)
grid2 grid2,LOC102784241 coding downstream 186255 22123035 ~ 22754750 (+)
atoh1a NA coding downstream 821331 22758111 ~ 22760837 (+)
G63715 NA non-coding upstream 54486 21875445 ~ 21875687 (+)
G63714 NA non-coding upstream 85035 21844832 ~ 21845138 (+)
LOC120560273 NA non-coding upstream 309462 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding upstream 311571 21616223 ~ 21618602 (+)
G63628 NA non-coding upstream 443135 21486769 ~ 21487038 (+)
G63792 NA non-coding downstream 195104 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 967255 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1050401 22987181 ~ 22988040 (+)
LOC120560300 NA non-coding downstream 1283070 23219850 ~ 23245368 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding downstream 1338140 23274920 ~ 23281109 (+)
LOC120560787 NA other upstream 330884 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 1252257 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1439587 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1488080 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 2166649 19759596 ~ 19763524 (+)
G63905 NA other downstream 993119 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1551187 23487967 ~ 23562285 (+)
G64108 NA other downstream 1755882 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 2884534 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 2886938 24823718 ~ 24837448 (+)

Expression


Co-expression Network