Gene
RNA
| Item | Value |
|---|---|
| gene id | rimbp2 |
| gene name | rimbp2,LOC107081823,LOC108247306,LOC103353655 |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053117.1 |
| NCBI id | CM020914.1 |
| chromosome length | 43979800 |
| location | 1532053 ~ 1658048 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| rimbp2 | Predicted to be involved in neuromuscular synaptic transmission. Predicted to be located in plasma membrane and synapse. Predicted to be active in presynaptic active zone cytoplasmic component. |
| description |
|---|
| PREDICTED: RIMS-binding protein 2 isoform X1 |
| id | description |
|---|---|
| K17591 | RIMBP2; RIMS-binding protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039803391.1 | False | 8048 | mRNA | 0.50 | 30 | 1532053 | 1658047 |
| XM_039803392.1 | False | 8027 | mRNA | 0.50 | 30 | 1532053 | 1658047 |
| XM_039803393.1 | False | 8022 | mRNA | 0.50 | 29 | 1532053 | 1658048 |
| XM_039803394.1 | False | 7976 | mRNA | 0.50 | 28 | 1532053 | 1658047 |
| XM_039803395.1 | False | 7955 | mRNA | 0.50 | 28 | 1532053 | 1658047 |
| XM_039803396.1 | False | 7926 | mRNA | 0.50 | 29 | 1532053 | 1658048 |
| XM_039803397.1 | False | 7922 | mRNA | 0.50 | 29 | 1532053 | 1658047 |
| XM_039803398.1 | False | 7865 | mRNA | 0.51 | 31 | 1532053 | 1658047 |
| XM_039803399.1 | False | 7802 | mRNA | 0.51 | 30 | 1532053 | 1658047 |
| XM_039803400.1 | False | 7775 | mRNA | 0.51 | 29 | 1532053 | 1658047 |
| XM_039803401.1 | False | 7651 | mRNA | 0.51 | 27 | 1532053 | 1581945 |
| XM_039803403.1 | False | 7649 | mRNA | 0.51 | 28 | 1532053 | 1658047 |
| XM_039803404.1 | False | 7844 | mRNA | 0.51 | 28 | 1532053 | 1647057 |
| XM_039803405.1 | False | 7311 | mRNA | 0.50 | 21 | 1532053 | 1564405 |
| XM_039803406.1 | False | 7264 | mRNA | 0.49 | 29 | 1532053 | 1658043 |
| XM_039803407.1 | False | 7706 | mRNA | 0.51 | 27 | 1532053 | 1647057 |
| XM_039803408.1 | False | 7137 | mRNA | 0.49 | 28 | 1532053 | 1658042 |
| XM_039803409.1 | False | 6962 | mRNA | 0.50 | 29 | 1532053 | 1657565 |
| XM_039803410.1 | False | 6991 | mRNA | 0.49 | 28 | 1532053 | 1658043 |
| XM_039803411.1 | False | 4529 | mRNA | 0.57 | 22 | 1545951 | 1658047 |
| XM_039803412.1 | False | 6864 | mRNA | 0.49 | 27 | 1532053 | 1658042 |
| XM_039803413.1 | False | 6842 | mRNA | 0.49 | 27 | 1532053 | 1658041 |
| XM_039803414.1 | False | 7039 | mRNA | 0.49 | 25 | 1532053 | 1658043 |
| XM_039803415.1 | False | 6970 | mRNA | 0.49 | 28 | 1532053 | 1658043 |
| XR_005639501.1 | True | 8124 | transcript | 0.50 | 30 | 1532053 | 1658047 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120561424 | LOC103375782,LOC101475208 | coding | downstream | 101097 | 1396719 ~ 1430956 (-) |
| slc15a4 | slc15a4 | coding | downstream | 160420 | 1340682 ~ 1371633 (-) |
| asb6 | asb6 | coding | downstream | 433605 | 1079598 ~ 1098448 (-) |
| LOC120560699 | ier5l,LOC103375736 | coding | downstream | 469489 | 1061407 ~ 1062564 (-) |
| zgc:154046 | LOC103375729 | coding | downstream | 471424 | 1052879 ~ 1060629 (-) |
| stx2b | stx2 | coding | upstream | 12568 | 1670616 ~ 1679105 (-) |
| rflna | rflna,LOC104943676,LOC100697335,LOC101470372,LOC103353642 | coding | upstream | 298997 | 1957045 ~ 1963606 (-) |
| chmp7 | chmp7 | coding | upstream | 405054 | 2063102 ~ 2067076 (-) |
| lgi3 | lgi3 | coding | upstream | 409842 | 2067890 ~ 2086544 (-) |
| fgfr1a | LOC104936599,LOC103353638 | coding | upstream | 430392 | 2088440 ~ 2122566 (-) |
| G58321 | NA | non-coding | downstream | 89472 | 1442258 ~ 1442581 (-) |
| G58225 | NA | non-coding | downstream | 459720 | 1072039 ~ 1072333 (-) |
| G58223 | NA | non-coding | downstream | 462426 | 1069391 ~ 1069627 (-) |
| G58217 | NA | non-coding | downstream | 467642 | 1063693 ~ 1064411 (-) |
| LOC120561213 | NA | non-coding | downstream | 939808 | 589159 ~ 592245 (-) |
| G58424 | NA | non-coding | upstream | 112958 | 1771006 ~ 1848641 (-) |
| G58444 | ncor2 | non-coding | upstream | 264827 | 1922875 ~ 1924510 (-) |
| G58450 | NA | non-coding | upstream | 278662 | 1936710 ~ 1937318 (-) |
| G58456 | NA | non-coding | upstream | 290031 | 1948079 ~ 1951132 (-) |
| G58465 | NA | non-coding | upstream | 374461 | 2032509 ~ 2032714 (-) |
| LOC120560045 | NA | other | downstream | 1507104 | 17589 ~ 24949 (-) |
| ankrd39 | LOC103353637,LOC100700369 | other | upstream | 479748 | 2137796 ~ 2139643 (-) |
| LOC120560995 | NA | other | upstream | 891998 | 2550046 ~ 2551366 (-) |
| ggt1a | ggt1,LOC102775580,LOC108234964 | other | upstream | 919827 | 2577875 ~ 2592746 (-) |
| si:ch211-107p11.3 | LOC103353652,LOC102075650,LOC108234931,LOC104950460 | other | upstream | 1027843 | 2685891 ~ 2689087 (-) |
| LOC120561394 | LOC107097799,LOC103353613,LOC101077666 | other | upstream | 1032562 | 2690610 ~ 2692543 (-) |
