cds2 (LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002)


Basic Information

Item Value
gene id cds2
gene name LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7075326 ~ 7101894 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803500.1
attCCTGCGGATTTGACACCGTTTGGGTTTATCGAGTGAAAAGTGTTGCTGTGCAAAATCTAGCTACACGCTAGATCTGTCAAATAATAAATCAGTGTCTCGGAGACACAGGACCTTCGCTGTAGTCGTTAGGCTACGATCTGCTAAGATGACAGAGCTAAGGCACCGTGGAGCCAAAGACACCGACCCAACGTTACAGCAGCAGCCGTCAGAGGACAAGGGTTCAGACAGTGAGCTGAAGGTGGAAAAAGATGGGGCGTCAGATGGCGAGTCCAAGGTGGACTCAGGCGTCCCAGAGGTGCCGGTCTCGGCTGATGACACCCCTGAGGTTCTAAACAAGGCCCTGTCTGGACTCTCTTCAAGATGGAAGAACTGGTGGGTCCGAGGCATCCTCACACTAGCCATgatctccttcttcttcctcatcaTCTACCTGGGCCCCATGGTGCTTATGATGATCGTCCTCTGTGTTCAGATCAAGTGCTTCCATGAAATCATCACCATTGGCTACAGTGTGTACCACTCCTACCACCTGCCCTGGTTCAGGACGTTGAGCTGGTACTTCTTGCTGTGTGTGAACTACTTCTTCTATGGTGAGACTGTGACAGATTCCTTCTTCGCACTGGTGCAAAGGGAGGAGCCGCTCCGCATCCTCAGCAAATACCACCGAATTATCTCCTTCGCCCTCTATCTCACAGGTTTCTGCATGTTTGTGCTGAGTTTGGTGAAGAAGCACTACCGTCTTCAGTTCTACATGTTTGGTTGGACCCATGTGACCCTGCTGATTGTGGTCACTCAGTCTCACCTTATTATTCACAACCTGTTTGAGGGGATGATCTgGTTCATTGTGCCAATTTCCTGCGTGATCTGTAACGACATTATGGCCTACATGTTTGGTTTCTTCTTTGGCCGCACCCCTCTGATCAAGCTATCACCTAAGAAGACATGGGAGGGATTCATCGGTGGACTCTTCTCCACCATTGTGTTTGGCATCATGCTGTCCTACGTGATGGCCGGCTGGCCCTACTTTGTGTGCCCGGTGGAATTCAACACCAACTCCAATAGTTTCCAGGTGGAATGTGAGCCGTCGGAGCTTTTCCAGCTCCAGGAATACGCGCTGCCCAGCGTCCTGGAGTCTGTCACTGGATGGACCACAGTGCGTCTCTATCCGTTCCAGATCCACAGCATCGCTCTCTCCTCCTTCGCCTCCATCATGGGACCTTTCGGCGGCTTCTTTGCCAGCGGCTTCAAAAGAGCCTTCAAGATCAAGGATTTTGCCAACACCATCCCGGGCCATGGTGGCATCATGGACCGATTCGACTGCCAGTACCTCATGGCCACATTTGTTAACGTCTACATTGCTAGCTTCATCAGGGGCCCCAACCCCGGCAAGGTGATCCAGCAGCTCCTGGCCCTCCGCGTCGATCAGCAGCTCCACATCTTCAACTCGCTGAAGGCTCACCTGACAGAGAAGGGCCTGCTGCCGGCGCTCCAGGAGGCCGCCGCCTAGAGcaacaccccctccccccagcACCCACACCAGCTCGCCCTGAGAGGGAGACCCGAGAGGAGGGCAGCGCCCTGAGGGCCCAGTGGCAGCCAAGGATCTCGGGGAGACTcgcagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 2

GO:

id name namespace
GO:0016024 CDP-diacylglycerol biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004605 phosphatidate cytidylyltransferase activity molecular_function

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803500.1 True 1706 mRNA 0.54 13 7075326 7101894

Neighbor

gene id symbol gene type direction distance location
mxd1 mxd1,LOC106535940,LOC102787379 coding upstream 48439 7008164 ~ 7026887 (+)
snrnp27 snrnp27,LOC102787093 coding upstream 68067 6997153 ~ 7007259 (+)
figla figla coding upstream 107230 6951936 ~ 6968096 (+)
npffr1l2 LOC104924995 coding upstream 220922 6829697 ~ 6854404 (+)
tet3 LOC104925995,LOC103369109 coding upstream 278629 6752288 ~ 6796697 (+)
arhgap25 arhgap25 coding downstream 6919 7108813 ~ 7136851 (+)
bmp10 bmp10,LOC101468345 coding downstream 38303 7140197 ~ 7143020 (+)
rchy1 rchy1 coding downstream 410145 7512039 ~ 7519772 (+)
LOC120560565 LOC103361063,LOC101470473,LOC101159109,LOC100710325,LOC108235010,LOC107393511 coding downstream 448720 7550614 ~ 7572968 (+)
si:ch211-12e13.1 NA coding downstream 474341 7576235 ~ 7597214 (+)
G59687 NA non-coding upstream 46017 7027298 ~ 7029309 (+)
G59627 NA non-coding upstream 259820 6815248 ~ 6815506 (+)
G59543 NA non-coding upstream 334037 6741041 ~ 6741289 (+)
G59544 NA non-coding upstream 334398 6740664 ~ 6740928 (+)
G59516 NA non-coding upstream 740535 6334494 ~ 6334791 (+)
G59696 NA non-coding downstream 77599 7179493 ~ 7263343 (+)
G59803 NA non-coding downstream 391994 7493888 ~ 7494204 (+)
G59804 tia1,LOC104967008 non-coding downstream 396595 7498489 ~ 7504014 (+)
G59833 NA non-coding downstream 485901 7587795 ~ 7588630 (+)
G59826 NA non-coding downstream 528612 7630506 ~ 7631241 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other upstream 24554 7009646 ~ 7050772 (+)
add2 LOC102210956,LOC102786375 other upstream 78470 6969119 ~ 6996856 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 356442 6674864 ~ 6718884 (+)
G59347 NA other upstream 1577572 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 1606116 5448061 ~ 5469210 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 472831 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 498198 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 523842 7625736 ~ 7630180 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other downstream 745777 7847671 ~ 7878371 (+)
cux2b cux2,LOC102795992 other downstream 845358 7947252 ~ 8051340 (+)

Expression


Co-expression Network