alkbh2 (alkbh2)


Basic Information

Item Value
gene id alkbh2
gene name alkbh2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18970284 ~ 18973314 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803561.1
CCTCGGAAAACAAAAACTCTCTCAATGGAACTGAAGTATTTCGCGCCAAAGAAAGTGACGAAACAGAGTTATGCTAATGAGCTGAGCGCTGTTCAAGACAAACTGCGGCTAGGTGTTTTCTACGGTTTGTGTCCACAGAAGAAGATCAAACTGGAGAGTGATGAGAGGATCGAGAATGAGGATGAGGGAGGTGAGTTCTCTCATCCTGTTCCCTGGCAGAAAATAGAGGCAGAGGGACTAGACTGTGATTATGCTCTGCTGTTCTCCAAAGAAGAAGCACACCACCTTTTTAAACAGCTGGAGGAGGAAGTGGTGTACTCAACAGGAGAAGAAGCAAAGGTCCAGTTGTTTGGAAAGGTGCACAATATACCCAGAAAGCAGGCTACATATGGAGATGCAGGTCTCACCTACACTTATTCTGGGGTGACACGTTTAGCCTGCCCCTGGACTCAAACCTTGGAATATATTCGGGATGCTGTCACAAAAACAACTGGACAAACATTTAACTTTGTTCTGGTCAACAGGTACAAAGATGGGCAGGATCACATGGGTGAGCATCGTGACGATGAGAAGGAGCTGGACCCCCTCTGTCCCATCGCCTCTGTCTCTCTGGGAGCGCCACGAGACTTTATCTTCCGGCACAGAGATGCTCGGGGAAAACAGAGCCACCGACAGATCAAACCCGTGAAGCTGGAGCTTGCTCATGGAAGCCTGCTCCTTATGAACTCACCGACCAACACTTTTTGGTACCACAGCCTGCCTGTTCGCAAAAAGATTTCCTTGCCTCGTATCAACCTCACCTTTAGACGCATCCTACTGGGAAGAAAGAAATGACCAAGCGTGGATTATCACCTGGGCCAGTGGGGCCAGTGCCTAAGAAGCCTCTGACTAAGGGGCCCCAAGTCAAGTCACTTCTGTCCTTGGACACATGGTCAAATATCACAAATCTaaaatttgtttgtttatgttgcaGCTGAATCTGACTGACTAAATGACAGCACAAGGTGAAATAAGTGATGACTACTGGGATTCTGGAGAATGAGCACATTTTACAGTAATCAGTGGTTTAAAAATGACACTTCTGACTCACTCAAGCTCAAACTACCGCTTCAGTAAATTTCATCAGGTTAAGTTTAGTGAAGCACCTGGCAATGTTCCTGAAGAAAGGAACAATAAAATCAACAATTCGACCTCAACTCCCGAGTGCAGACCATGAAGGCTACATTTAGCATCTTGTGTTGCACTCAAAGGCACTCATGTACTTTGACAGAGCAATGGGGCACTGTATGCTGATTGCAAATTAATTTGATATATTGGAAAGAGAGTTGTGTGCTGTTCCAAAGAAGATGTacaaatttgaaaataaaagtattatggTCAATGG
>XM_039803562.1
GCTGCTCCGGGGACAGAGGAGCAAGAGGGAGGCTGGAAGCCTCTGGCTCCACCACCGAGGACCTCAGCTTCTTCTGGATAATTTTAGTGTATTtagcaaaatacaaaacagGTCTTAAACATCCTAAACTTAAGCTCCTCAGAGTTACACAGACAACAGGTTACTGCAATGGAAAAGTTTGTGAATAAAAGCTCCTGCATTAATGATGCAAAAAGTCCACAGAAGAAGATCAAACTGGAGAGTGATGAGAGGATCGAGAATGAGGATGAGGGAGGTGAGTTCTCTCATCCTGTTCCCTGGCAGAAAATAGAGGCAGAGGGACTAGACTGTGATTATGCTCTGCTGTTCTCCAAAGAAGAAGCACACCACCTTTTTAAACAGCTGGAGGAGGAAGTGGTGTACTCAACAGGAGAAGAAGCAAAGGTCCAGTTGTTTGGAAAGGTGCACAATATACCCAGAAAGCAGGCTACATATGGAGATGCAGGTCTCACCTACACTTATTCTGGGGTGACACGTTTAGCCTGCCCCTGGACTCAAACCTTGGAATATATTCGGGATGCTGTCACAAAAACAACTGGACAAACATTTAACTTTGTTCTGGTCAACAGGTACAAAGATGGGCAGGATCACATGGGTGAGCATCGTGACGATGAGAAGGAGCTGGACCCCCTCTGTCCCATCGCCTCTGTCTCTCTGGGAGCGCCACGAGACTTTATCTTCCGGCACAGAGATGCTCGGGGAAAACAGAGCCACCGACAGATCAAACCCGTGAAGCTGGAGCTTGCTCATGGAAGCCTGCTCCTTATGAACTCACCGACCAACACTTTTTGGTACCACAGCCTGCCTGTTCGCAAAAAGATTTCCTTGCCTCGTATCAACCTCACCTTTAGACGCATCCTACTGGGAAGAAAGAAATGACCAAGCGTGGATTATCACCTGGGCCAGTGGGGCCAGTGCCTAAGAAGCCTCTGACTAAGGGGCCCCAAGTCAAGTCACTTCTGTCCTTGGACACATGGTCAAATATCACAAATCTaaaatttgtttgtttatgttgcaGCTGAATCTGACTGACTAAATGACAGCACAAGGTGAAATAAGTGATGACTACTGGGATTCTGGAGAATGAGCACATTTTACAGTAATCAGTGGTTTAAAAATGACACTTCTGACTCACTCAAGCTCAAACTACCGCTTCAGTAAATTTCATCAGGTTAAGTTTAGTGAAGCACCTGGCAATGTTCCTGAAGAAAGGAACAATAAAATCAACAATTCGACCTCAACTCCCGAGTGCAGACCATGAAGGCTACATTTAGCATCTTGTGTTGCACTCAAAGGCACTCATGTACTTTGACAGAGCAATGGGGCACTGTATGCTGATTGCAAATTAATTTGATATATTGGAAAGAGAGTTGTGTGCTGTTCCAAAGAAGATGTacaaatttgaaaataaaagtattatggTCAATGG
>XM_039803563.1
taaaaacaatcaaGAACACAGCGGTACTTGTGAACGCAGCTTGGATTACGCTGAACGTGTCGTGGGAAAAGATAAATCCCTTAGTGTTTCAAATCATAGACAAATACTACTACAAATTCACTGTCTTAAACATCCTAAACTTAAGCTCCTCAGAGTTACACAGACAACAGGTTACTGCAATGGAAAAGTTTGTGAATAAAAGCTCCTGCATTAATGATGCAAAAAGTCCACAGAAGAAGATCAAACTGGAGAGTGATGAGAGGATCGAGAATGAGGATGAGGGAGGTGAGTTCTCTCATCCTGTTCCCTGGCAGAAAATAGAGGCAGAGGGACTAGACTGTGATTATGCTCTGCTGTTCTCCAAAGAAGAAGCACACCACCTTTTTAAACAGCTGGAGGAGGAAGTGGTGTACTCAACAGGAGAAGAAGCAAAGGTCCAGTTGTTTGGAAAGGTGCACAATATACCCAGAAAGCAGGCTACATATGGAGATGCAGGTCTCACCTACACTTATTCTGGGGTGACACGTTTAGCCTGCCCCTGGACTCAAACCTTGGAATATATTCGGGATGCTGTCACAAAAACAACTGGACAAACATTTAACTTTGTTCTGGTCAACAGGTACAAAGATGGGCAGGATCACATGGGTGAGCATCGTGACGATGAGAAGGAGCTGGACCCCCTCTGTCCCATCGCCTCTGTCTCTCTGGGAGCGCCACGAGACTTTATCTTCCGGCACAGAGATGCTCGGGGAAAACAGAGCCACCGACAGATCAAACCCGTGAAGCTGGAGCTTGCTCATGGAAGCCTGCTCCTTATGAACTCACCGACCAACACTTTTTGGTACCACAGCCTGCCTGTTCGCAAAAAGATTTCCTTGCCTCGTATCAACCTCACCTTTAGACGCATCCTACTGGGAAGAAAGAAATGACCAAGCGTGGATTATCACCTGGGCCAGTGGGGCCAGTGCCTAAGAAGCCTCTGACTAAGGGGCCCCAAGTCAAGTCACTTCTGTCCTTGGACACATGGTCAAATATCACAAATCTaaaatttgtttgtttatgttgcaGCTGAATCTGACTGACTAAATGACAGCACAAGGTGAAATAAGTGATGACTACTGGGATTCTGGAGAATGAGCACATTTTACAGTAATCAGTGGTTTAAAAATGACACTTCTGACTCACTCAAGCTCAAACTACCGCTTCAGTAAATTTCATCAGGTTAAGTTTAGTGAAGCACCTGGCAATGTTCCTGAAGAAAGGAACAATAAAATCAACAATTCGACCTCAACTCCCGAGTGCAGACCATGAAGGCTACATTTAGCATCTTGTGTTGCACTCAAAGGCACTCATGTACTTTGACAGAGCAATGGGGCACTGTATGCTGATTGCAAATTAATTTGATATATTGGAAAGAGAGTTGTGTGCTGTTCCAAAGAAGATGTacaaatttgaaaataaaagtattatggTCAATGG
>XM_039803564.1
TCTCAATGGAACTGAAGTATTTCGCGCCAAAGAAAGTGACGAAACAGAGTTATGCTAATGAGCTGAGCGCTGTTCAAGACAAACTGCGGCTAGGTGTTTTCTACGGTTTGTGGTCTTAAACATCCTAAACTTAAGCTCCTCAGAGTTACACAGACAACAGGTTACTGCAATGGAAAAGTTTGTGAATAAAAGCTCCTGCATTAATGATGCAAAAAGTCCACAGAAGAAGATCAAACTGGAGAGTGATGAGAGGATCGAGAATGAGGATGAGGGAGGTGAGTTCTCTCATCCTGTTCCCTGGCAGAAAATAGAGGCAGAGGGACTAGACTGTGATTATGCTCTGCTGTTCTCCAAAGAAGAAGCACACCACCTTTTTAAACAGCTGGAGGAGGAAGTGGTGTACTCAACAGGAGAAGAAGCAAAGGTCCAGTTGTTTGGAAAGGTGCACAATATACCCAGAAAGCAGGCTACATATGGAGATGCAGGTCTCACCTACACTTATTCTGGGGTGACACGTTTAGCCTGCCCCTGGACTCAAACCTTGGAATATATTCGGGATGCTGTCACAAAAACAACTGGACAAACATTTAACTTTGTTCTGGTCAACAGGTACAAAGATGGGCAGGATCACATGGGTGAGCATCGTGACGATGAGAAGGAGCTGGACCCCCTCTGTCCCATCGCCTCTGTCTCTCTGGGAGCGCCACGAGACTTTATCTTCCGGCACAGAGATGCTCGGGGAAAACAGAGCCACCGACAGATCAAACCCGTGAAGCTGGAGCTTGCTCATGGAAGCCTGCTCCTTATGAACTCACCGACCAACACTTTTTGGTACCACAGCCTGCCTGTTCGCAAAAAGATTTCCTTGCCTCGTATCAACCTCACCTTTAGACGCATCCTACTGGGAAGAAAGAAATGACCAAGCGTGGATTATCACCTGGGCCAGTGGGGCCAGTGCCTAAGAAGCCTCTGACTAAGGGGCCCCAAGTCAAGTCACTTCTGTCCTTGGACACATGGTCAAATATCACAAATCTaaaatttgtttgtttatgttgcaGCTGAATCTGACTGACTAAATGACAGCACAAGGTGAAATAAGTGATGACTACTGGGATTCTGGAGAATGAGCACATTTTACAGTAATCAGTGGTTTAAAAATGACACTTCTGACTCACTCAAGCTCAAACTACCGCTTCAGTAAATTTCATCAGGTTAAGTTTAGTGAAGCACCTGGCAATGTTCCTGAAGAAAGGAACAATAAAATCAACAATTCGACCTCAACTCCCGAGTGCAGACCATGAAGGCTACATTTAGCATCTTGTGTTGCACTCAAAGGCACTCATGTACTTTGACAGAGCAATGGGGCACTGTATGCTGATTGCAAATTAATTTGATATATTGGAAAGAGAGTTGTGTGCTGTTCCAAAGAAGATGTacaaatttgaaaataaaagtattatggTCAATGG

Function

symbol description
alkbh2 Predicted to enable DNA-N1-methyladenine dioxygenase activity; cytosine C-5 DNA demethylase activity; and ferrous iron binding activity. Predicted to be involved in DNA dealkylation involved in DNA repair and oxidative DNA demethylation. Predicted to act upstream of or within DNA repair. Orthologous to human ALKBH2 (alkB homolog 2, alpha-ketoglutarate dependent dioxygenase).

NR:

description
DNA oxidative demethylase ALKBH2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG:

id description
K10859 ALKBH2; DNA oxidative demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803561.1 False 1384 mRNA 0.45 4 18970895 18973314
XM_039803562.1 False 1468 mRNA 0.45 4 18970284 18973314
XM_039803563.1 True 1479 mRNA 0.44 4 18970491 18973314
XM_039803564.1 False 1469 mRNA 0.45 4 18970914 18973314

Neighbor

gene id symbol gene type direction distance location
LOC120560963 NA coding upstream 7476 18961837 ~ 18962808 (+)
gatc gatc coding upstream 8800 18953824 ~ 18961484 (+)
LOC120560962 NA coding upstream 11306 18958006 ~ 18958978 (+)
sgsm1a sgsm1 coding upstream 18142 18924315 ~ 18952142 (+)
ankrd13a ankrd13a coding upstream 65511 18896623 ~ 18904773 (+)
svopa svop coding downstream 12062 18985376 ~ 18992979 (+)
ssh1a ssh1 coding downstream 28982 19002296 ~ 19022881 (+)
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding downstream 56093 19029407 ~ 19074342 (+)
sart3 sart3,LOC102781133 coding downstream 114483 19087797 ~ 19099604 (+)
cmklr1 NA coding downstream 146831 19120145 ~ 19122475 (+)
G62755 NA non-coding upstream 105477 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 197176 18772755 ~ 18773108 (+)
G62732 NA non-coding upstream 221788 18747490 ~ 18748496 (+)
G62667 NA non-coding upstream 333063 18636726 ~ 18637221 (+)
G62656 lztr1 non-coding upstream 352715 18617074 ~ 18617569 (+)
G62836 NA non-coding downstream 111620 19084934 ~ 19086862 (+)
LOC120560789 NA non-coding downstream 178219 19151533 ~ 19153584 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 576096 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 582069 19555383 ~ 19562350 (+)
G63015 LOC107394186,LOC104941583 non-coding downstream 602247 19575561 ~ 19633642 (+)
mvk mvk,LOC102798305 other upstream 227885 18737518 ~ 18742399 (+)
acacb acacb other upstream 284821 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 495553 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 550694 18407348 ~ 18419590 (+)
G62513 NA other upstream 639054 18330705 ~ 18331230 (+)
tmem119a LOC103353570,LOC104946818 other downstream 103247 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 457087 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 786282 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1427633 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1500337 20473651 ~ 20490586 (+)

Expression


Co-expression Network