bin3 (bin3)


Basic Information

Item Value
gene id bin3
gene name bin3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37762546 ~ 37807680 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803578.1
CGAGCGGCTCGGCTGAGCTCCGGACTTCCGGTTTGAAGCTCGACTGTTGACTGGTGGAAAGGAATGAAGTCCTCGGAAAATAACAAAACCACCCAATGAAACCGGAATAAAAGTTCACTCAAAATGAGCTGGATTCCTTTCAAGATTGGACAACCAAAGAAGCAGATTGTCTCTAAAACCgtTGAAAGAGACTTTGAGCGAGAATATGACAAGCTTCAAAAGCTGGAGGATCAGACGAAAAAGCTTCACAAGGACATGAAGAAAAGCACCGAGGCTGATTTAGcCATGTCCAAAGCAGCTGTGAAGATTTCTGCAGACCTGCTGAGTAACCCGCTGTGTGAGCAGGACCAGGCCTTCCTGGAGTCCATGACCGCTTTAGATACATCCATGAGAAGGATGGACTCCTTCAACCAGGAGAAGGTCAACCAGATACAGAAAACTGTTATTGACCCTCTGAAAAAGTACAGCGGCGTCTTCCCCAGCCTCAACATGGCAGTGAAACGCCGGGAACAGGCACTGCAGGACTACAAACGGTTGCAATCCAAAGCGGAGAAGtatgaagagaaagaaaaaaccgGGCCCGTTATGGTCAAACTACATCAGGCCAGAGAGGAGCTCCGACCGGTCCGGGAGGACTTTGAGGCCAAGAACAAGCAGCTGCTGGACGAGATGCCCAAGTTCTACCACAGCCGCATCGACTACTTCCAGCCCAGCTTCGAGGCTCTCATCAGGGCGCAGGTTGTCTATTTCACCGAAATGTACAAGATCTTCAGCGAGTTGACAGACCAGATCGACCAGGCAGGGCTGACTGAcgagcagagggagagggagaccgAGGCCAAGCTCAGCGAGTTGCGTGCTCTGTCCATTGTCGCCGACGACTGAGGGAGGGAAGCCCAAAAATGGGGAAAGGGCTCCTTTTAAATGCCTCTCTGAATCCATTGCACTCTTTTCAGGCTCCTTGGCGCAGTTCAAATGGACAGCAATGGCCTTAACGTGATCATCAGATTGTTTCCTTGCGGCCTCGTCACCCCTGCACTACACTCCCATGCTTCTTTCTCCCCACAGAGACTCTCTGCGACTCAAACTGCTGCAGCTGAAATGCCACATTAACTAAGCCATCAGCCAAGTGCAACATTATAAgccaatgtgtttttttgtgtgtgtttttttttttctaagggAAGGAATCAAACTGGTTCTCGTCAGAACCAATTAACAGGGTTACACTTCTTGGTTTCAGAGATGTCTATAAGCATTTGTTTCTAAAGAAGGAAATGAGcaaggaaatgttttttttttttttattcatctgcATTTTTATTACCTAAGTTTGAAATGACAAACACTACAGACaatgtattgtaatgtattgtAGGTTACTGGCTAGAAAATGTATGTCTTGTGTTTTTGGCCTTTGCTGGTTATCTCCAAGTTTAGCTCTGTGCCATGTTTGTTGTGTGAGGGCTGTTGGTTGGGGTTTTACAGGATGATGTTGGTAACATCACCTGTGCATAATGTGCCTACGTTGTCCCGACTGTGGATGtaacatgaaaaggaaaaaaaaaaaacttcacttGAGTGAAGTGAGATTGTGCCCGTGCGAGCAGCGGTGTTGAAAGGTCGACCACTCGGGCTGCGGAGAGAACGAGTCGCTGTTGGGAGTCTAACCGCTGTCCAAAACAAAGGCTGGTGCTCCCTCTGGTGGTAAATACTATTCATGACACaccattttgttttaatataCACCATCCAtcctttgttttattgttggtTGTTTAGATGGTCTGTTAGCGAAGACACCTCGTTGTACCCTCTACACCAGGGTTGGAAGCcaactttttcttcttcttgattTTTGGACCAAATCATACTGTCATTGTTTCCACCTTTATCaggtatccccccccccccgtatgATGAACACACTCTGGTCAATGGGATTACACGATGATGTACACACACTGATTGCtctcatgtgttgtttttttgttgtctttttttaaaggtgtcACACCAAGAAGTTAACTATCGTTTGACATAATTTTGAAATTATTGAAGCAAATGCTTAGTTGATTGACTGTCTTTGTGTATTGTTTGAGTTCCACGTGTGTATTAATGAAGGTTTTTTTCTAATTAATGAAGAGTTTAAGTGGTAGAGCTTGTTTTTCTAACACACATCTAAGTGAATACTGTAACACAGTGGGGTTTCATTTaggtttttttaaaatatgtattaacaCTACAATCTGTTCAATGACAATGTTTTAGCCATCATCTAAATGTACAGTcaatcatgaaataaataaactgtgagAATAGCAACCATGTCTACAATCCTACTGCTAGCTGCAAAGATTGTTGAAGATGTTGTCAacttaatcgccaactattttgataatcgattaattcaTCAgttcagtcatttttttttatgaaagaaaTAAATCTAAATTCTCTGA

Function

symbol description
bin3 Predicted to contribute to lipid binding activity. Predicted to be involved in actin cortical patch localization; endocytosis; and plasma membrane tubulation. Predicted to be located in cytoplasm. Predicted to be active in actin cortical patch. Orthologous to human BIN3 (bridging integrator 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: bridging integrator 3-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20120 BIN3; bridging integrator 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803578.1 True 2462 mRNA 0.43 9 37762546 37807680

Neighbor

gene id symbol gene type direction distance location
ubl4a ubl4a,LOC101469798,LOC102296658 coding downstream 54410 37700498 ~ 37708136 (-)
si:dkey-32e23.4 LOC103362318 coding downstream 62258 37685932 ~ 37700288 (-)
disp3 disp3,LOC102795715 coding downstream 78367 37655023 ~ 37684179 (-)
LOC120561226 NA coding downstream 207351 37552066 ~ 37555195 (-)
LOC120561222 NA coding downstream 220944 37539184 ~ 37541602 (-)
egr3 egr3 coding upstream 5242 37812922 ~ 37817376 (-)
LOC120559987 NA coding upstream 19210 37826890 ~ 37911235 (-)
LOC120561264 rhobtb2 coding upstream 112512 37920192 ~ 37934852 (-)
slc25a37 slc25a37,LOC103371456,LOC107093885,LOC102799379 coding upstream 309458 38117138 ~ 38159292 (-)
entpd4 entpd4 coding upstream 372599 38180279 ~ 38200948 (-)
G67550 nfu1,LOC101170349,LOC101072203,LOC100703913,LOC103362311,LOC107393744 non-coding downstream 318008 37439315 ~ 37444538 (-)
G67521 NA non-coding downstream 431426 37330638 ~ 37331120 (-)
G67486 NA non-coding downstream 655087 37102992 ~ 37107459 (-)
G67475 NA non-coding downstream 664015 37058238 ~ 37098531 (-)
G67409 NA non-coding downstream 984411 36777625 ~ 36778135 (-)
G67681 NA non-coding upstream 132201 37939881 ~ 37940295 (-)
G67687 NA non-coding upstream 181552 37989232 ~ 37989542 (-)
G67861 NA non-coding upstream 307566 38115246 ~ 38116233 (-)
G67882 NA non-coding upstream 338316 38145996 ~ 38146799 (-)
G67883 NA non-coding upstream 368045 38175725 ~ 38175961 (-)
G67577 NA other downstream 207779 37535859 ~ 37554767 (-)
G67523 NA other downstream 417463 37344461 ~ 37345083 (-)
adrb3a adgra2,LOC104963277 other downstream 436145 37229742 ~ 37326401 (-)
G67483 pdlim2,LOC104963286,LOC103470528,LOC100702294 other downstream 610900 37098792 ~ 37151646 (-)
arrdc3a arrdc3 other downstream 734753 36971161 ~ 37027793 (-)
LOC120560036 NA other upstream 528408 38336088 ~ 38344796 (-)
LOC120560826 pitpnb,LOC104952320 other upstream 1602559 39410239 ~ 39461568 (-)
G68717 NA other upstream 2127692 39935372 ~ 39935846 (-)
LOC120560061 NA other upstream 2192326 40000006 ~ 40026743 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 2505689 40313369 ~ 40330695 (-)

Expression


Co-expression Network