LOC120560760 (LOC104943387)


Basic Information

Item Value
gene id LOC120560760
gene name LOC104943387
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17945795 ~ 17950057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803592.1
tcttgcacatgcgcagaacggattgtgcaggtggaacggatcgggtactgacctCATATGTCAATGGTACTGACAGCCGGCCTGTTTCTGAACCTATGTTATTATAGACTGTAAAAACAGTCAATGTTCTGAACggtgcacagacacagacacgtcGACGATGGACAGCAAGGAGAAGAGAAGGGGTATCCTGGAGCGACTAAATGCTGGGGAGGTGGTTGTAGGAGATGGAGGTTATGTGATGCAGCTAGAGCGACGTGGCTATGTGAAGGCTGGACACTGGACACCTGAGGCCGCTGTTGAACATCCTGAAGCAGTTCGGCAGCTGCACAGGGAGTTCCTGAGAGCAGGAGCCAATGTGATTCAGACATTCACCTTCTACTGCAGTGAGGATAAACTGGAGATCAGTGGCAATGTCACCAACATCACCGGGGCCCAGATCAATGAGGCAGCCTGTGACCTGGCCAGGGAGGTAGCCAATGAGGGTGATGCATTGGTCGCTGGGTGTGTGTCTAAGACTCCCTGTTATGTGAAGAGTCACAGTGAGAATGAGGTCAAGGCCATCTTTAAGAAACAGATGGATGACTTCCTCAAGAAGGACATTGATTTCTTTATAGTGGAGTTTGTTGATCATGTGGAAGAGGCAGTGTGGGCAGTGGAGGTGCTTAAGACCAGCGGTAAACCAGTGGGTGCAACACTGTGCATCTCCCCTCACGGAGACATGCACGGAGTCCCACCTGGACAGTGTGCAGTCAGTCTGGTCAAAGCTGGAGCTGACATTGTTGGAGTAAATTGCCACTTGGACCCTCTGACATGCGTTCAAACAGTGAAGTTGATGAAAGCGGGATTAGAGAAAGCTGGTCTCAAAGCCCATCTCATGATCCAGCCGCTGGGCTTTCACACACCTGAGTGCAACATAGGCGGATACACCAGCCTACCCGAATACCCCTTCGCATTGGAGACCAGAGCAATAACCCGCTGGGACATCCATAAGTATGCCAGAGAGGCGTACAATGCTGGAATTCGCTACATTGGTGGCTGCTGTGGATTTGAGCCCTACCATATCAGAGCTATAGCAGAAGAAGTGGCTGCAGAGAGAGGATTCCTCCCACCAGCTTCAGAGAAGCACGGACTCtggggagctgctctggagatgCACACTAAACCCTGGGTCAGAGCCAGGGCTCGTCGGGAGTACTGGGAAAACCTTTTGCCTGCTTCTGGACGTCCCAAATGCCCTTCCATGGCCACACCAGCCGATGATTATGAAAAACAGCttgaaacaaaaatacaaatgtgaTCTCTTGTATACACTATACAGTTTGCTGTATACTTTATGAGTGTGATCAGATGGTCCCCTTTTTTTCATATACTGTAATGAATGGCAATTGAGGATCTGATGAACCAGAGCtttgtttacagatttgtgAAATGCTTTGTACTGTTTTAAAACTCAACAGCTCAACCCTCTCATTATTTTCACTTTATTATTAGGCCGTTGGCTTGGCCATACTACACATACTGTAACTTGGGTTCAGCCATCAGTGAATCAGCTGCTTCCTCTATTTTCTGTAACTATATGCTCTATCCCCAAACCTAATAATACATAGATTGAACTAGTtaatggtcttttttttttttgtaaaacgtCTTCATAAGTTAATCAAATTTGTTGATTGATTGTTGTAATTTGCTGGAAAATATtttcacataaataaataaaaatgatcttGTTTTTCCAACAATCCTGTTTTGTAAAAAGAAACACACTGCTAAATGTGTTACTGTATACAAATAGGTTTAGTAAGTGAAGTGGCCCAACTTCAATCACCTGTCTCTACTGAACATTTCTGTATAGTGAAATATGACTATACTGTATTCCTTGTATGTCTGATcatattactttttatttctctAAACTGTGTACTATTACTGACATGAATAACAAATTTCACATAAAAACAAAGCTGGTATCTTTA

Function

NR:

description
PREDICTED: betaine--homocysteine S-methyltransferase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803592.1 True 1979 mRNA 0.45 8 17945795 17950057

Neighbor

gene id symbol gene type direction distance location
kif2a kif2a coding upstream 12367 17914936 ~ 17933428 (+)
LOC120560752 col4a3bp coding upstream 95770 17825047 ~ 17850025 (+)
poc5 LOC104956951 coding upstream 135537 17801445 ~ 17810258 (+)
f2rl2 f2rl2,LOC104963555 coding upstream 209846 17733568 ~ 17735949 (+)
LOC120560621 LOC102798399,LOC107393894 coding upstream 230730 17712920 ~ 17715065 (+)
LOC120560642 LOC103357080,LOC100694356,LOC102778564,LOC102192834 coding downstream 2024 17952081 ~ 17967487 (+)
tent2 NA coding downstream 41809 17991866 ~ 17998381 (+)
slc14a2 slc14a1,LOC100693008,LOC103357096 coding downstream 183590 18133647 ~ 18139334 (+)
riok2 riok2 coding downstream 282671 18232728 ~ 18237999 (+)
LOC120560024 lix1 coding downstream 289251 18239308 ~ 18244773 (+)
G62344 NA non-coding upstream 4949 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 131982 17813589 ~ 17813813 (+)
G62280 NA non-coding upstream 187738 17757855 ~ 17758057 (+)
LOC120560616 NA non-coding upstream 400887 17536842 ~ 17544908 (+)
G62217 NA non-coding upstream 429698 17515654 ~ 17516097 (+)
G62372 NA non-coding downstream 104742 18054799 ~ 18056149 (+)
G62406 NA non-coding downstream 177479 18127536 ~ 18127745 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding downstream 343203 18293260 ~ 18296903 (+)
G62502 thoc5 non-coding downstream 363154 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 370586 18320643 ~ 18321158 (+)
tmem167a tmem167a,LOC103397084 other upstream 373090 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 531200 17285648 ~ 17414595 (+)
LOC120560897 LOC105925468 other upstream 1411620 16532916 ~ 16534175 (+)
LOC120560890 NA other upstream 1469890 16468310 ~ 16475905 (+)
fam172a fam172a,LOC102785942 other upstream 1846311 15943698 ~ 16099484 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 48629 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 65348 18015405 ~ 18029386 (+)
setbp1 setbp1,LOC102781608 other downstream 124711 18074768 ~ 18129069 (+)
G62513 NA other downstream 380648 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 457291 18407348 ~ 18419590 (+)

Expression


Co-expression Network